Mock Version: 2.3 Mock Version: 2.3 Mock Version: 2.3 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f33-build-22029541-1844392/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False sh: /usr/bin/perl: No such file or directory Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1596240000 Wrote: /builddir/build/SRPMS/libsbml-5.18.0-18.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'], chrootPath='/var/lib/mock/f33-build-22029541-1844392/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsbml.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1596240000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.bE6wv8 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSBML-5.18.0-Source + /usr/bin/gzip -dc /builddir/build/SOURCES/libSBML-5.18.0-core-plus-packages-src.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd libSBML-5.18.0-Source + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #1 (libsbml-fix_install_libpaths.patch):' Patch #1 (libsbml-fix_install_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/bindings/ruby/CMakeLists.txt patching file src/bindings/csharp/CMakeLists.txt patching file src/bindings/octave/CMakeLists.txt patching file src/bindings/perl/CMakeLists.txt + echo 'Patch #2 (time-clock.diff):' Patch #2 (time-clock.diff): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file examples/python/readSBML.py + unzip -n /builddir/build/SOURCES/libSBML-5.18.0-render-src.zip Archive: /builddir/build/SOURCES/libSBML-5.18.0-render-src.zip + iconv -f latin1 -t utf8 NEWS.txt + touch -r NEWS.txt t + mv t NEWS.txt + find docs/src/filters -type f -name '*.py' -exec pathfix.py -pn -i /usr/bin/python3 '{}' ';' docs/src/filters/doc-filter-python.py: updating docs/src/filters/doc-filter-c.py: updating docs/src/filters/doc-filter-csharp.py: updating + grep -e 'This file was automatically generated by SWIG' -r . -l + xargs rm + mkdir build-docs ++ ls -1 ++ grep -v build-docs + cp -a AUTHORS.txt CMakeLists.txt COPYING.html COPYING.txt FUNDING.txt LICENSE.html LICENSE.txt Makefile.in NEWS.txt OLD_NEWS.txt README-extension.txt README.txt VERSION.txt VERSION_PACKAGES.ac acinclude.m4 aclocal.m4 cmake_uninstall.cmake.in common.cmake comp-package.cmake config configure configure.ac docs examples fbc-package.cmake groups-package.cmake l3v2extendedmath-package.cmake layout-package.cmake libsbml.spec.in macosx multi-package.cmake qual-package.cmake render-package.cmake src build-docs/ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.jEtC25 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + mkdir -p build + pushd build ~/build/BUILD/libSBML-5.18.0-Source/build ~/build/BUILD/libSBML-5.18.0-Source + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ python3-config --abiflags ++ python3-config --abiflags + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.9 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.9.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_JAVA:BOOL=ON -DWITH_JAVASCRIPT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CSHARP:BOOL=ON -DWITH_XERCES:BOOL=OFF -DWITH_LIBXML:BOOL=ON -DWITH_EXPAT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.0.2") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Success -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python3 (found version "3.9") -- Found JNI: /usr/lib/jvm/java/lib/libjawt.so -- Found Java: /usr/bin/java (found version "11.0.8") found components: Development -- Found Perl: /usr/bin/perl (found version "5.32.0") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.32.0") -- Found PythonLibs: /usr/lib64/libpython3.9.so (found version "3.9.0b5") -- Found Ruby: /usr/bin/ruby (found suitable version "2.7.1", minimum required is "1.8.0") -- ---------------------------------------------------------------------- libSBML version 5.18.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'buildhw-x86-11.iad2.fedoraproject.org' host type = Linux host operating system = Linux 5.6.19-300.fc32.x86_64 host CPU architecture = x86_64 General build flags: CC = /usr/bin/gcc CXX = /usr/bin/g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 4.0.2) -- Using C# = /usr/bin/mcs -- Using Java = /usr/bin/java -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'comp' package = ON -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX RUBY_VENDORLIB_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.18.0-Source/build + /usr/bin/make -O -j48 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/libSBML-5.18.0-Source -B/builddir/build/BUILD/libSBML-5.18.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.18.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.18.0-Source/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/depend /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/depend /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source 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Scanning dependencies of target binding_r_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend.internal". 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Scanning dependencies of target binding_perl_swig make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Built target binding_csharp_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend.internal". 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Scanning dependencies of target sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml-static.dir/depend.internal". 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Scanning dependencies of target sbml-static make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:118:5: note: in expansion of macro 'COMP_CREATE_NS' 118 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function 'virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:118:5: note: in expansion of macro 'COMP_CREATE_NS' 118 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:162:5: note: in expansion of macro 'COMP_CREATE_NS' 162 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function 'virtual SBase* ListOfDeletions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:162:5: note: in expansion of macro 'COMP_CREATE_NS' 162 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function 'virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function 'virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function 'virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:155:5: note: in expansion of macro 'COMP_CREATE_NS' 155 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function 'virtual SBase* ListOfPorts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:154:5: note: in expansion of macro 'COMP_CREATE_NS' 154 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:170:7: note: in expansion of macro 'COMP_CREATE_NS' 170 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:373:3: note: in expansion of macro 'COMP_CREATE_NS' 373 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:447:3: note: in expansion of macro 'COMP_CREATE_NS' 447 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:554:5: note: in expansion of macro 'COMP_CREATE_NS' 554 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:170:7: note: in expansion of macro 'COMP_CREATE_NS' 170 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedElement* CompSBasePlugin::createReplacedElement()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:373:3: note: in expansion of macro 'COMP_CREATE_NS' 373 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'ReplacedBy* CompSBasePlugin::createReplacedBy()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:447:3: note: in expansion of macro 'COMP_CREATE_NS' 447 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function 'virtual void CompSBasePlugin::createListOfReplacedElements()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:554:5: note: in expansion of macro 'COMP_CREATE_NS' 554 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:400:3: note: in expansion of macro 'COMP_CREATE_NS' 400 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:541:3: note: in expansion of macro 'COMP_CREATE_NS' 541 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:400:3: note: in expansion of macro 'COMP_CREATE_NS' 400 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function 'ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:541:3: note: in expansion of macro 'COMP_CREATE_NS' 541 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 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-o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:552:5: note: in expansion of macro 'COMP_CREATE_NS' 552 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:671:7: note: in expansion of macro 'COMP_CREATE_NS' 671 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:682:7: note: in expansion of macro 'COMP_CREATE_NS' 682 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'SBaseRef* SBaseRef::createSBaseRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:552:5: note: in expansion of macro 'COMP_CREATE_NS' 552 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function 'virtual SBase* SBaseRef::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:671:7: note: in expansion of macro 'COMP_CREATE_NS' 671 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:682:7: note: in expansion of macro 'COMP_CREATE_NS' 682 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP 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-fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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-fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:285:3: note: in expansion of macro 'COMP_CREATE_NS' 285 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function 'void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:285:3: note: in expansion of macro 'COMP_CREATE_NS' 285 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:324:3: note: in expansion of macro 'COMP_CREATE_NS' 324 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:313:3: note: in expansion of macro 'COMP_CREATE_NS' 313 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:454:3: note: in expansion of macro 'COMP_CREATE_NS' 454 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Submodel* CompModelPlugin::createSubmodel()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:313:3: note: in expansion of macro 'COMP_CREATE_NS' 313 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function 'Port* CompModelPlugin::createPort()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:454:3: note: in expansion of macro 'COMP_CREATE_NS' 454 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:497:3: note: in expansion of macro 'COMP_CREATE_NS' 497 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function 'Deletion* Submodel::createDeletion()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:497:3: note: in expansion of macro 'COMP_CREATE_NS' 497 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function 'void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/CompExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:324:3: note: in expansion of macro 'COMP_CREATE_NS' 324 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:300:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 300 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:337:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 337 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:312:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 312 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:349:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 349 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:386:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 386 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:148:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 148 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:446:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 446 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:145, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:197:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 197 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:833:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 833 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1278:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1278 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1485:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1485 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:148:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 148 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function 'GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:446:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 446 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcAnd* FbcAnd::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:300:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 300 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'FbcOr* FbcAnd::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:337:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 337 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function 'GeneProductRef* FbcAnd::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcAnd* FbcOr::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:312:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 312 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'FbcOr* FbcOr::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:349:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 349 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function 'GeneProductRef* FbcOr::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:386:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 386 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:145, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:197:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 197 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'FluxBound* FbcModelPlugin::createFluxBound()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:833:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 833 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'Objective* FbcModelPlugin::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneProduct* FbcModelPlugin::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1278:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1278 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function 'GeneAssociation* FbcModelPlugin::createGeneAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1485:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1485 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:350:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 350 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:699:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 699 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Association.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:96, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:212:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:227:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 227 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:242:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 242 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:927:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 927 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:105, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:943:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 943 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:980:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 980 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1017:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1017 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1113:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1113 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1121:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1121 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1129:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1129 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1137:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1137 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'Association* GeneAssociation::createAssociation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:350:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 350 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function 'virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:699:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 699 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1100:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1100 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1196:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1196 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:126, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1178:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1178 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:89, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1194:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1194 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:105, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcAnd* ListOfFbcAssociations::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:943:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 943 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'FbcOr* ListOfFbcAssociations::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:980:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 980 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'GeneProductRef* ListOfFbcAssociations::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1017:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1017 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function 'virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1113:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1113 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1121:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1121 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1129:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1129 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1137:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1137 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'FluxObjective* ListOfFluxObjectives::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1100:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1100 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function 'virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1196:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1196 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:96, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcAnd* GeneProductAssociation::createAnd()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:212:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 212 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual FbcOr* GeneProductAssociation::createOr()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:227:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 227 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:242:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 242 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function 'virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:927:3: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 927 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:233:5: note: in expansion of macro 'GROUPS_CREATE_NS' 233 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:126, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function 'virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1178:7: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1178 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.h:134, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:472:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 472 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1493:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:89, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'GeneProduct* ListOfGeneProducts::createGeneProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1098:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1098 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function 'virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1194:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1194 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:247:5: note: in expansion of macro 'GROUPS_CREATE_NS' 247 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:307:3: note: in expansion of macro 'GROUPS_CREATE_NS' 307 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig C# source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DWITH_DOXYGEN="OFF" -DLIB_NAME="libsbmlcs" -P /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/swig-binding.cmake make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' Swig: C# Bindings Creating /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/csharp-files make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints 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CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.h:134, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'FluxObjective* Objective::createFluxObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:472:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 472 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'Objective* ListOfObjectives::createObjective()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1374:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1374 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function 'virtual SBase* ListOfObjectives::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:76:5: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 76 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1493:5: note: in expansion of macro 'FBC_CREATE_NS_WITH_VERSION' 1493 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.h:164, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:449:5: note: in expansion of macro 'GROUPS_CREATE_NS' 449 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:100, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:347:5: note: in expansion of macro 'GROUPS_CREATE_NS' 347 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:458:3: note: in expansion of macro 'GROUPS_CREATE_NS' 458 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function 'Group* GroupsModelPlugin::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:233:5: note: in expansion of macro 'GROUPS_CREATE_NS' 233 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'Group* ListOfGroups::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:247:5: note: in expansion of macro 'GROUPS_CREATE_NS' 247 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function 'virtual SBase* ListOfGroups::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:307:3: note: in expansion of macro 'GROUPS_CREATE_NS' 307 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig Java source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DWITH_DOXYGEN="OFF" -DLIB_NAME="libsbmlcs" -P /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/swig-binding.cmake Swig: Java Bindings make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints 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CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:100, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'Member* ListOfMembers::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:347:5: note: in expansion of macro 'GROUPS_CREATE_NS' 347 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function 'virtual SBase* ListOfMembers::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:458:3: note: in expansion of macro 'GROUPS_CREATE_NS' 458 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:480:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 480 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.h:164, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function 'Member* Group::createMember()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:70:1: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:449:5: note: in expansion of macro 'GROUPS_CREATE_NS' 449 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function 'Layout* LayoutModelPlugin::createLayout()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:480:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 480 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:361:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 361 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:376:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 376 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:644:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 644 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/depend.internal". Scanning dependencies of target binding_java_jar make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'LineSegment* Curve::createLineSegment()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:361:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 361 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'CubicBezier* Curve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:376:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 376 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function 'virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:644:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 644 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig: R Bindings cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DLIBSBML_REMOVE_WRAPPERS=OFF -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/swig-binding.cmake cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML.R" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libSBML.R cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLInputStream.h:236: Warning 314: 'next' is a R keyword, renaming to '_next' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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19%] Built target binding_r_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:651:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 651 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1178:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 1178 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:498:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 498 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:975:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 975 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' 131 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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&& /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig Ruby source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/libsbml.i make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:102: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:102: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:103: Warning 801: Wrong class name (corrected to `Int_array') /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig/render-package.i:103: Warning 801: Wrong class name (corrected to `Int_array') make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Built target binding_ruby_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'ReferenceGlyph* GeneralGlyph::createReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:651:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 651 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function 'virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1178:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 1178 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Curve.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:36: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:498:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 498 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function 'virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:975:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 975 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:49, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' 127 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' 320 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' 347 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' 403 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' 123 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' 294 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' 135 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:582:5: note: in expansion of macro 'MULTI_CREATE_NS' 582 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:40, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1202:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1202 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' 124 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:46, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function 'virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:131:8: note: in expansion of macro 'MULTI_CREATE_NS' 131 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Build csharp files cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp && /usr/bin/cmake -DCSHARP_EXTRA_ARGS="" -DCSHARP_COMPILER="/usr/bin/mcs" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp/compile-native-files.cmake Creating: libsbmlcsP.dll Creating: TestRunner.exe Creating: TestRW.exe make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Built target binding_csharp_managed_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:53, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' 479 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' 632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' 734 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1382:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1382 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1398:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1398 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1414:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1414 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1429:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1429 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1445:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1445 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1462:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1462 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2043:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2043 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2215:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2215 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2367:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2367 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2516:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2516 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2665:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2665 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Point.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:52, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:40, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function 'virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1202:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1202 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:49, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:127:7: note: in expansion of macro 'MULTI_CREATE_NS' 127 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:320:5: note: in expansion of macro 'MULTI_CREATE_NS' 320 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:347:5: note: in expansion of macro 'MULTI_CREATE_NS' 347 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function 'IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:403:4: note: in expansion of macro 'MULTI_CREATE_NS' 403 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:51, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:123:5: note: in expansion of macro 'MULTI_CREATE_NS' 123 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function 'SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:294:5: note: in expansion of macro 'MULTI_CREATE_NS' 294 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:135:7: note: in expansion of macro 'MULTI_CREATE_NS' 135 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function 'CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:582:5: note: in expansion of macro 'MULTI_CREATE_NS' 582 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:50, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function 'virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:124:5: note: in expansion of macro 'MULTI_CREATE_NS' 124 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig Perl bindings source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libSBML-5.18.0-Source --master /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/LibSBML.i make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLInputStream.h:236: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.h:811: Warning 509: Overloaded method SBase::getAncestorOfType(int,std::string const &) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.h:859: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const. /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:339: Warning 509: Overloaded method GraphicalPrimitive2D::setFillRule(FillRule_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:323: Warning 509: as it is shadowed by GraphicalPrimitive2D::setFillRule(GraphicalPrimitive2D::FILL_RULE). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:384: Warning 509: Overloaded method GradientBase::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:368: Warning 509: as it is shadowed by GradientBase::setSpreadMethod(GradientBase::SPREADMETHOD). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:443: Warning 509: Overloaded method Text::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:439: Warning 509: as it is shadowed by Text::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:481: Warning 509: Overloaded method Text::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:476: Warning 509: as it is shadowed by Text::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:517: Warning 509: Overloaded method Text::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:512: Warning 509: as it is shadowed by Text::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:554: Warning 509: Overloaded method Text::setVTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.h:549: Warning 509: as it is shadowed by Text::setVTextAnchor(VTextAnchor_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:532: Warning 509: Overloaded method RenderGroup::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:528: Warning 509: as it is shadowed by RenderGroup::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:570: Warning 509: Overloaded method RenderGroup::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:565: Warning 509: as it is shadowed by RenderGroup::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:607: Warning 509: Overloaded method RenderGroup::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:602: Warning 509: as it is shadowed by RenderGroup::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:679: Warning 509: Overloaded method RenderGroup::setVTextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:639: Warning 509: as it is shadowed by RenderGroup::setVTextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:682: Warning 509: Overloaded method RenderGroup::setVtextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:643: Warning 509: as it is shadowed by RenderGroup::setVtextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:910: Warning 509: Overloaded method DefaultValues::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:895: Warning 509: as it is shadowed by DefaultValues::setSpreadMethod(GradientBase::SPREADMETHOD const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1141: Warning 509: Overloaded method DefaultValues::setFillRule(FillRule_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1125: Warning 509: as it is shadowed by DefaultValues::setFillRule(GraphicalPrimitive2D::FILL_RULE const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1261: Warning 509: Overloaded method DefaultValues::setFontWeight(FontWeight_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1245: Warning 509: as it is shadowed by DefaultValues::setFontWeight(Text::FONT_WEIGHT const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1309: Warning 509: Overloaded method DefaultValues::setFontStyle(FontStyle_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1293: Warning 509: as it is shadowed by DefaultValues::setFontStyle(Text::FONT_STYLE const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1357: Warning 509: Overloaded method DefaultValues::setTextAnchor(HTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1341: Warning 509: as it is shadowed by DefaultValues::setTextAnchor(Text::TEXT_ANCHOR const). /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1405: Warning 509: Overloaded method DefaultValues::setVTextAnchor(VTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1389: Warning 509: as it is shadowed by DefaultValues::setVTextAnchor(Text::TEXT_ANCHOR const). make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Built target binding_perl_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:741:7: note: in expansion of macro 'MULTI_CREATE_NS' 741 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'CompartmentGlyph* Layout::createCompartmentGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1382:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1382 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'SpeciesGlyph* Layout::createSpeciesGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1398:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1398 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'ReactionGlyph* Layout::createReactionGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1414:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1414 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GeneralGlyph* Layout::createGeneralGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1429:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1429 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'TextGlyph* Layout::createTextGlyph()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1445:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1445 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'GraphicalObject* Layout::createAdditionalGraphicalObject()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1462:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1462 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfLayouts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2043:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2043 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2215:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2215 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2367:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2367 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2516:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2516 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function 'virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2665:5: note: in expansion of macro 'LAYOUT_CREATE_NS' 2665 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:53, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:132:5: note: in expansion of macro 'MULTI_CREATE_NS' 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:479:5: note: in expansion of macro 'MULTI_CREATE_NS' 479 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:632:5: note: in expansion of macro 'MULTI_CREATE_NS' 632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function 'SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:734:5: note: in expansion of macro 'MULTI_CREATE_NS' 734 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:739:5: note: in expansion of macro 'MULTI_CREATE_NS' 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:137, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' 586 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' 427 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' 618 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' 999 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function 'virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:741:7: note: in expansion of macro 'MULTI_CREATE_NS' 741 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function 'virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:739:5: note: in expansion of macro 'MULTI_CREATE_NS' 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' 449 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' 606 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' 763 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' 920 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' 1177 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1625:5: note: in expansion of macro 'MULTI_CREATE_NS' 1625 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1632:5: note: in expansion of macro 'MULTI_CREATE_NS' 1632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' 929 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' 544 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' 757 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1380:5: note: in expansion of macro 'MULTI_CREATE_NS' 1380 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1387:5: note: in expansion of macro 'MULTI_CREATE_NS' 1387 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' 860 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' 270 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:482:5: note: in expansion of macro 'MULTI_CREATE_NS' 482 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:586:5: note: in expansion of macro 'MULTI_CREATE_NS' 586 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:137, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function 'virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:841:5: note: in expansion of macro 'MULTI_CREATE_NS' 841 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' 854 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:427:5: note: in expansion of macro 'MULTI_CREATE_NS' 427 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:618:3: note: in expansion of macro 'MULTI_CREATE_NS' 618 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function 'virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:999:5: note: in expansion of macro 'MULTI_CREATE_NS' 999 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:270:5: note: in expansion of macro 'MULTI_CREATE_NS' 270 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function 'virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:482:5: note: in expansion of macro 'MULTI_CREATE_NS' 482 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:860:5: note: in expansion of macro 'MULTI_CREATE_NS' 860 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function 'virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:854:5: note: in expansion of macro 'MULTI_CREATE_NS' 854 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function 'virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:929:5: note: in expansion of macro 'MULTI_CREATE_NS' 929 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:449:5: note: in expansion of macro 'MULTI_CREATE_NS' 449 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:606:5: note: in expansion of macro 'MULTI_CREATE_NS' 606 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:763:5: note: in expansion of macro 'MULTI_CREATE_NS' 763 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:920:5: note: in expansion of macro 'MULTI_CREATE_NS' 920 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1177:7: note: in expansion of macro 'MULTI_CREATE_NS' 1177 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function 'virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1625:5: note: in expansion of macro 'MULTI_CREATE_NS' 1625 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1632:5: note: in expansion of macro 'MULTI_CREATE_NS' 1632 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:30: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:544:5: note: in expansion of macro 'MULTI_CREATE_NS' 544 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* SpeciesFeature::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:757:3: note: in expansion of macro 'MULTI_CREATE_NS' 757 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function 'virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1380:5: note: in expansion of macro 'MULTI_CREATE_NS' 1380 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:72:5: note: in expansion of macro 'EXTENSION_CREATE_NS' 72 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1387:5: note: in expansion of macro 'MULTI_CREATE_NS' 1387 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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-fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:834:5: note: in expansion of macro 'QUAL_CREATE_NS' 834 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1016:5: note: in expansion of macro 'QUAL_CREATE_NS' 1016 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:58, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:834:5: note: in expansion of macro 'QUAL_CREATE_NS' 834 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function 'Transition* QualModelPlugin::createTransition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1016:5: note: in expansion of macro 'QUAL_CREATE_NS' 1016 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX 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-o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator 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-o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:445:5: note: in expansion of macro 'RENDER_CREATE_NS' 445 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:708:5: note: in expansion of macro 'RENDER_CREATE_NS' 708 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1067:5: note: in expansion of macro 'QUAL_CREATE_NS' 1067 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1124:3: note: in expansion of macro 'QUAL_CREATE_NS' 1124 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'DefaultTerm* ListOfFunctionTerms::createDefaultTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1067:5: note: in expansion of macro 'QUAL_CREATE_NS' 1067 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function 'virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1124:3: note: in expansion of macro 'QUAL_CREATE_NS' 1124 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function 'LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:445:5: note: in expansion of macro 'RENDER_CREATE_NS' 445 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:32: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function 'GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:708:5: note: in expansion of macro 'RENDER_CREATE_NS' 708 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.h:86, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:455:5: note: in expansion of macro 'QUAL_CREATE_NS' 455 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:639:5: note: in expansion of macro 'QUAL_CREATE_NS' 639 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:797:5: note: in expansion of macro 'QUAL_CREATE_NS' 797 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1766:5: note: in expansion of macro 'QUAL_CREATE_NS' 1766 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.h:102, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1337:5: note: in expansion of macro 'QUAL_CREATE_NS' 1337 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.h:86, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Input* Transition::createInput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:455:5: note: in expansion of macro 'QUAL_CREATE_NS' 455 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'Output* Transition::createOutput()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:639:5: note: in expansion of macro 'QUAL_CREATE_NS' 639 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'FunctionTerm* Transition::createFunctionTerm()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:797:5: note: in expansion of macro 'QUAL_CREATE_NS' 797 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function 'virtual SBase* ListOfTransitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1766:5: note: in expansion of macro 'QUAL_CREATE_NS' 1766 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:364:5: note: in expansion of macro 'RENDER_CREATE_NS' 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:84, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1333:5: note: in expansion of macro 'QUAL_CREATE_NS' 1333 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1240:5: note: in expansion of macro 'QUAL_CREATE_NS' 1240 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:84, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function 'virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1333:5: note: in expansion of macro 'QUAL_CREATE_NS' 1333 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.h:102, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function 'virtual SBase* ListOfInputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1337:5: note: in expansion of macro 'QUAL_CREATE_NS' 1337 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.h:93, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function 'virtual SBase* ListOfOutputs::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/QualExtension.h:69:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 69 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1240:5: note: in expansion of macro 'QUAL_CREATE_NS' 1240 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function 'GlobalStyle* GlobalRenderInformation::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:364:5: note: in expansion of macro 'RENDER_CREATE_NS' 364 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:61, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:366:3: note: in expansion of macro 'RENDER_CREATE_NS' 366 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:61, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'ColorDefinition* ListOfColorDefinitions::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function 'virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:366:3: note: in expansion of macro 'RENDER_CREATE_NS' 366 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:323:5: note: in expansion of macro 'RENDER_CREATE_NS' 323 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:412:3: note: in expansion of macro 'RENDER_CREATE_NS' 412 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'RenderCubicBezier* ListOfCurveElements::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:323:5: note: in expansion of macro 'RENDER_CREATE_NS' 323 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function 'virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:412:3: note: in expansion of macro 'RENDER_CREATE_NS' 412 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:260:5: note: in expansion of macro 'RENDER_CREATE_NS' 260 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:288:5: note: in expansion of macro 'RENDER_CREATE_NS' 288 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:316:5: note: in expansion of macro 'RENDER_CREATE_NS' 316 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:344:5: note: in expansion of macro 'RENDER_CREATE_NS' 344 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:372:5: note: in expansion of macro 'RENDER_CREATE_NS' 372 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:400:5: note: in expansion of macro 'RENDER_CREATE_NS' 400 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:428:5: note: in expansion of macro 'RENDER_CREATE_NS' 428 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:456:5: note: in expansion of macro 'RENDER_CREATE_NS' 456 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:516:3: note: in expansion of macro 'RENDER_CREATE_NS' 516 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:282:5: note: in expansion of macro 'RENDER_CREATE_NS' 282 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:347:3: note: in expansion of macro 'RENDER_CREATE_NS' 347 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:305:5: note: in expansion of macro 'RENDER_CREATE_NS' 305 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' 334 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:394:3: note: in expansion of macro 'RENDER_CREATE_NS' 394 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:530:3: note: in expansion of macro 'RENDER_CREATE_NS' 530 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:556:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 556 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1310:3: note: in expansion of macro 'RENDER_CREATE_NS' 1310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1312:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1312 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:97, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:564:5: note: in expansion of macro 'RENDER_CREATE_NS' 564 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:303:5: note: in expansion of macro 'RENDER_CREATE_NS' 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In member function 'GraphicalPrimitive1D::readAttributes(XMLAttributes const&, ExpectedAttributes const&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1162:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 1162 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.h:97, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function 'GradientStop* GradientBase::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:564:5: note: in expansion of macro 'RENDER_CREATE_NS' 564 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:70, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Image* ListOfDrawables::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:260:5: note: in expansion of macro 'RENDER_CREATE_NS' 260 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Ellipse* ListOfDrawables::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:288:5: note: in expansion of macro 'RENDER_CREATE_NS' 288 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Rectangle* ListOfDrawables::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:316:5: note: in expansion of macro 'RENDER_CREATE_NS' 316 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Polygon* ListOfDrawables::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:344:5: note: in expansion of macro 'RENDER_CREATE_NS' 344 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderGroup* ListOfDrawables::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:372:5: note: in expansion of macro 'RENDER_CREATE_NS' 372 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'LineEnding* ListOfDrawables::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:400:5: note: in expansion of macro 'RENDER_CREATE_NS' 400 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'Text* ListOfDrawables::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:428:5: note: in expansion of macro 'RENDER_CREATE_NS' 428 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'RenderCurve* ListOfDrawables::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:456:5: note: in expansion of macro 'RENDER_CREATE_NS' 456 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function 'virtual SBase* ListOfDrawables::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:516:3: note: in expansion of macro 'RENDER_CREATE_NS' 516 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In member function 'GraphicalPrimitive1D::readAttributes(XMLAttributes const&, ExpectedAttributes const&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1162:47: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 1162 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:79, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'GradientStop* ListOfGradientStops::createGradientStop()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:303:5: note: in expansion of macro 'RENDER_CREATE_NS' 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function 'virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:424:3: note: in expansion of macro 'RENDER_CREATE_NS' 424 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:604:5: note: in expansion of macro 'RENDER_CREATE_NS' 604 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:839:3: note: in expansion of macro 'RENDER_CREATE_NS' 839 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:961:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 961 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'GlobalStyle* ListOfGlobalStyles::createGlobalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:282:5: note: in expansion of macro 'RENDER_CREATE_NS' 282 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function 'virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:347:3: note: in expansion of macro 'RENDER_CREATE_NS' 347 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'LinearGradient* ListOfGradientDefinitions::createLinearGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:305:5: note: in expansion of macro 'RENDER_CREATE_NS' 305 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'RadialGradient* ListOfGradientDefinitions::createRadialGradient()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:334:5: note: in expansion of macro 'RENDER_CREATE_NS' 334 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function 'virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:394:3: note: in expansion of macro 'RENDER_CREATE_NS' 394 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.h:72, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'RenderGroup* LineEnding::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:530:3: note: in expansion of macro 'RENDER_CREATE_NS' 530 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'BoundingBox* LineEnding::createBoundingBox()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:556:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 556 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function 'virtual SBase* LineEnding::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1310:3: note: in expansion of macro 'RENDER_CREATE_NS' 1310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:70:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 70 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1312:3: note: in expansion of macro 'LAYOUT_CREATE_NS' 1312 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:65, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:424:3: note: in expansion of macro 'RENDER_CREATE_NS' 424 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:604:5: note: in expansion of macro 'RENDER_CREATE_NS' 604 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:839:3: note: in expansion of macro 'RENDER_CREATE_NS' 839 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function 'ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:961:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 961 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'LineEnding* ListOfLineEndings::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:294:5: note: in expansion of macro 'RENDER_CREATE_NS' 294 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function 'virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:368:3: note: in expansion of macro 'RENDER_CREATE_NS' 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:298:5: note: in expansion of macro 'RENDER_CREATE_NS' 298 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'LocalStyle* ListOfLocalStyles::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:298:5: note: in expansion of macro 'RENDER_CREATE_NS' 298 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function 'virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:363:3: note: in expansion of macro 'RENDER_CREATE_NS' 363 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:338:5: note: in expansion of macro 'RENDER_CREATE_NS' 338 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:362:5: note: in expansion of macro 'RENDER_CREATE_NS' 362 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:421:3: note: in expansion of macro 'RENDER_CREATE_NS' 421 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:585:5: note: in expansion of macro 'RENDER_CREATE_NS' 585 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:789:3: note: in expansion of macro 'RENDER_CREATE_NS' 789 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:911:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 911 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createLocalStyle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:338:5: note: in expansion of macro 'RENDER_CREATE_NS' 338 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function 'LocalStyle* LocalRenderInformation::createStyle(const string&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:362:5: note: in expansion of macro 'RENDER_CREATE_NS' 362 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:119:5: note: in expansion of macro 'RENDER_CREATE_NS' 119 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:420:5: note: in expansion of macro 'RENDER_CREATE_NS' 420 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:448:5: note: in expansion of macro 'RENDER_CREATE_NS' 448 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:67, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'DefaultValues* ListOfLocalRenderInformation::createDefaultValues()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:421:3: note: in expansion of macro 'RENDER_CREATE_NS' 421 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:585:5: note: in expansion of macro 'RENDER_CREATE_NS' 585 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:789:3: note: in expansion of macro 'RENDER_CREATE_NS' 789 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function 'ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:911:40: warning: 'numErrs' may be used uninitialized in this function [-Wmaybe-uninitialized] 911 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor 'Polygon::Polygon(const XMLNode&, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:119:5: note: in expansion of macro 'RENDER_CREATE_NS' 119 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderPoint* Polygon::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:420:5: note: in expansion of macro 'RENDER_CREATE_NS' 420 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function 'RenderCubicBezier* Polygon::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:448:5: note: in expansion of macro 'RENDER_CREATE_NS' 448 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/common/libsbml-version.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/common/operationReturnValues.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/common/libsbml-version.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/CVTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 19%] Building: libsbml.jar cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -E make_directory /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/test cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -DJava_JAVAC_EXECUTABLE="/usr/bin/javac" -DJava_JAR_EXECUTABLE="/usr/bin/jar" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java" -DFILE_SEP=":" -DPATH_SEP=/ -DCOMPATIBILIY=1.6 -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java/compile-native-files.cmake added manifest adding: org/sbml/libsbml/ASTBasePlugin.class(in = 8882) (out= 2716)(deflated 69%) adding: org/sbml/libsbml/ASTNode.class(in = 16330) (out= 4805)(deflated 70%) adding: org/sbml/libsbml/ASTNodeList.class(in = 1588) (out= 755)(deflated 52%) adding: org/sbml/libsbml/ASTNodeValues_t.class(in = 2940) (out= 1111)(deflated 62%) adding: org/sbml/libsbml/AlgebraicRule.class(in = 1830) (out= 891)(deflated 51%) adding: org/sbml/libsbml/AssignmentRule.class(in = 2070) (out= 962)(deflated 53%) adding: org/sbml/libsbml/Association.class(in = 5584) (out= 1898)(deflated 66%) adding: org/sbml/libsbml/BindingSiteSpeciesType.class(in = 3128) (out= 1193)(deflated 61%) adding: org/sbml/libsbml/BoundingBox.class(in = 7240) (out= 2362)(deflated 67%) adding: org/sbml/libsbml/CVTerm.class(in = 4761) (out= 1712)(deflated 64%) adding: org/sbml/libsbml/CVTermList.class(in = 1570) (out= 754)(deflated 51%) adding: org/sbml/libsbml/Callback.class(in = 1680) (out= 860)(deflated 48%) adding: org/sbml/libsbml/CallbackRegistry.class(in = 1767) (out= 813)(deflated 53%) adding: org/sbml/libsbml/CobraToFbcConverter.class(in = 2311) (out= 989)(deflated 57%) adding: org/sbml/libsbml/ColorDefinition.class(in = 7407) (out= 2314)(deflated 68%) adding: org/sbml/libsbml/CompBase.class(in = 1538) (out= 777)(deflated 49%) adding: org/sbml/libsbml/CompExtension.class(in = 5875) (out= 2357)(deflated 59%) adding: org/sbml/libsbml/CompFlatteningConverter.class(in = 2326) (out= 981)(deflated 57%) adding: org/sbml/libsbml/CompModelPlugin.class(in = 6826) (out= 2170)(deflated 68%) adding: org/sbml/libsbml/CompPkgNamespaces.class(in = 2400) (out= 1051)(deflated 56%) adding: org/sbml/libsbml/CompSBMLDocumentPlugin.class(in = 8023) (out= 2269)(deflated 71%) adding: org/sbml/libsbml/CompSBasePlugin.class(in = 5665) (out= 1809)(deflated 68%) adding: org/sbml/libsbml/Compartment.class(in = 6887) (out= 2201)(deflated 68%) adding: org/sbml/libsbml/CompartmentGlyph.class(in = 4973) (out= 1677)(deflated 66%) adding: org/sbml/libsbml/CompartmentReference.class(in = 4559) (out= 1547)(deflated 66%) adding: org/sbml/libsbml/CompartmentType.class(in = 3012) (out= 1187)(deflated 60%) adding: org/sbml/libsbml/Constraint.class(in = 4376) (out= 1582)(deflated 63%) adding: org/sbml/libsbml/ConversionOption.class(in = 5625) (out= 1687)(deflated 70%) adding: org/sbml/libsbml/ConversionProperties.class(in = 8183) (out= 2119)(deflated 74%) adding: org/sbml/libsbml/CubicBezier.class(in = 6218) (out= 2035)(deflated 67%) adding: org/sbml/libsbml/Curve.class(in = 4510) (out= 1728)(deflated 61%) adding: org/sbml/libsbml/Date.class(in = 4816) (out= 1835)(deflated 61%) adding: org/sbml/libsbml/DateList.class(in = 1534) (out= 751)(deflated 51%) adding: org/sbml/libsbml/DefaultTerm.class(in = 3243) (out= 1291)(deflated 60%) adding: org/sbml/libsbml/DefaultValues.class(in = 17808) (out= 4223)(deflated 76%) adding: org/sbml/libsbml/DefinitionURLRegistry.class(in = 1903) (out= 864)(deflated 54%) adding: org/sbml/libsbml/Delay.class(in = 3643) (out= 1452)(deflated 60%) adding: org/sbml/libsbml/Deletion.class(in = 3157) (out= 1275)(deflated 59%) adding: org/sbml/libsbml/Dimensions.class(in = 5204) (out= 1872)(deflated 64%) adding: org/sbml/libsbml/ElementFilter.class(in = 1714) (out= 850)(deflated 50%) adding: org/sbml/libsbml/Ellipse.class(in = 9265) (out= 2434)(deflated 73%) adding: org/sbml/libsbml/Event.class(in = 8738) (out= 2759)(deflated 68%) adding: org/sbml/libsbml/EventAssignment.class(in = 4830) (out= 1687)(deflated 65%) adding: org/sbml/libsbml/ExternalModelDefinition.class(in = 5096) (out= 1655)(deflated 67%) adding: org/sbml/libsbml/FbcAnd.class(in = 5098) (out= 1837)(deflated 63%) adding: org/sbml/libsbml/FbcAssociation.class(in = 4373) (out= 1525)(deflated 65%) adding: org/sbml/libsbml/FbcExtension.class(in = 6304) (out= 2540)(deflated 59%) adding: org/sbml/libsbml/FbcModelPlugin.class(in = 12107) (out= 3262)(deflated 73%) adding: org/sbml/libsbml/FbcOr.class(in = 5058) (out= 1839)(deflated 63%) adding: org/sbml/libsbml/FbcPkgNamespaces.class(in = 2382) (out= 1050)(deflated 55%) adding: org/sbml/libsbml/FbcReactionPlugin.class(in = 6085) (out= 1856)(deflated 69%) adding: org/sbml/libsbml/FbcSBMLDocumentPlugin.class(in = 1957) (out= 906)(deflated 53%) adding: org/sbml/libsbml/FbcSpeciesPlugin.class(in = 4764) (out= 1599)(deflated 66%) adding: org/sbml/libsbml/FbcToCobraConverter.class(in = 2141) (out= 945)(deflated 55%) adding: org/sbml/libsbml/FbcV1ToV2Converter.class(in = 2275) (out= 980)(deflated 56%) adding: org/sbml/libsbml/FbcV2ToV1Converter.class(in = 2125) (out= 944)(deflated 55%) adding: org/sbml/libsbml/FluxBound.class(in = 5097) (out= 1781)(deflated 65%) adding: org/sbml/libsbml/FluxObjective.class(in = 4782) (out= 1660)(deflated 65%) adding: org/sbml/libsbml/FunctionDefinition.class(in = 4844) (out= 1635)(deflated 66%) adding: org/sbml/libsbml/FunctionTerm.class(in = 4227) (out= 1564)(deflated 62%) adding: org/sbml/libsbml/GeneAssociation.class(in = 4678) (out= 1622)(deflated 65%) adding: org/sbml/libsbml/GeneProduct.class(in = 4630) (out= 1638)(deflated 64%) adding: org/sbml/libsbml/GeneProductAssociation.class(in = 6197) (out= 1953)(deflated 68%) adding: org/sbml/libsbml/GeneProductRef.class(in = 4686) (out= 1622)(deflated 65%) adding: org/sbml/libsbml/GeneralGlyph.class(in = 8715) (out= 2695)(deflated 69%) adding: org/sbml/libsbml/GlobalRenderInformation.class(in = 6837) (out= 2082)(deflated 69%) adding: org/sbml/libsbml/GlobalStyle.class(in = 3021) (out= 1203)(deflated 60%) adding: org/sbml/libsbml/GradientBase.class(in = 6236) (out= 2064)(deflated 66%) adding: org/sbml/libsbml/GradientStop.class(in = 4468) (out= 1628)(deflated 63%) adding: org/sbml/libsbml/GraphicalObject.class(in = 6881) (out= 2185)(deflated 68%) adding: org/sbml/libsbml/GraphicalPrimitive1D.class(in = 6101) (out= 1942)(deflated 68%) adding: org/sbml/libsbml/GraphicalPrimitive2D.class(in = 4299) (out= 1482)(deflated 65%) adding: org/sbml/libsbml/Group.class(in = 6206) (out= 2196)(deflated 64%) adding: org/sbml/libsbml/GroupsExtension.class(in = 4885) (out= 1963)(deflated 59%) adding: org/sbml/libsbml/GroupsModelPlugin.class(in = 4847) (out= 1672)(deflated 65%) adding: org/sbml/libsbml/GroupsPkgNamespaces.class(in = 2436) (out= 1052)(deflated 56%) adding: org/sbml/libsbml/ISBMLExtensionNamespaces.class(in = 1574) (out= 727)(deflated 53%) adding: org/sbml/libsbml/IdList.class(in = 1894) (out= 873)(deflated 53%) adding: org/sbml/libsbml/IdentifierTransformer.class(in = 1827) (out= 859)(deflated 52%) adding: org/sbml/libsbml/Image.class(in = 7035) (out= 2334)(deflated 66%) adding: org/sbml/libsbml/InSpeciesTypeBond.class(in = 4906) (out= 1639)(deflated 66%) adding: org/sbml/libsbml/InitialAssignment.class(in = 4890) (out= 1696)(deflated 65%) adding: org/sbml/libsbml/Input.class(in = 5279) (out= 1848)(deflated 64%) adding: org/sbml/libsbml/IntraSpeciesReaction.class(in = 3066) (out= 1188)(deflated 61%) adding: org/sbml/libsbml/KineticLaw.class(in = 9493) (out= 2876)(deflated 69%) adding: org/sbml/libsbml/L3ParserSettings.class(in = 5648) (out= 1831)(deflated 67%) adding: org/sbml/libsbml/L3v2extendedmathASTPlugin.class(in = 4308) (out= 1460)(deflated 66%) adding: org/sbml/libsbml/L3v2extendedmathExtension.class(in = 4128) (out= 1456)(deflated 64%) adding: org/sbml/libsbml/L3v2extendedmathPkgNamespaces.class(in = 2616) (out= 1067)(deflated 59%) adding: org/sbml/libsbml/L3v2extendedmathSBMLDocumentPlugin.class(in = 2178) (out= 922)(deflated 57%) adding: org/sbml/libsbml/Layout.class(in = 14453) (out= 3960)(deflated 72%) adding: org/sbml/libsbml/LayoutExtension.class(in = 7754) (out= 2934)(deflated 62%) adding: org/sbml/libsbml/LayoutModelPlugin.class(in = 3881) (out= 1379)(deflated 64%) adding: org/sbml/libsbml/LayoutPkgNamespaces.class(in = 2436) (out= 1052)(deflated 56%) adding: org/sbml/libsbml/LayoutSpeciesReferencePlugin.class(in = 1717) (out= 801)(deflated 53%) adding: org/sbml/libsbml/LineEnding.class(in = 6771) (out= 2260)(deflated 66%) adding: org/sbml/libsbml/LineSegment.class(in = 5593) (out= 1958)(deflated 64%) adding: org/sbml/libsbml/LinearGradient.class(in = 8338) (out= 2294)(deflated 72%) adding: org/sbml/libsbml/ListOf.class(in = 5123) (out= 1870)(deflated 63%) adding: org/sbml/libsbml/ListOfColorDefinitions.class(in = 4764) (out= 1594)(deflated 66%) adding: org/sbml/libsbml/ListOfCompartmentGlyphs.class(in = 3656) (out= 1334)(deflated 63%) adding: org/sbml/libsbml/ListOfCompartmentReferences.class(in = 3698) (out= 1297)(deflated 64%) adding: org/sbml/libsbml/ListOfCompartmentTypes.class(in = 3086) (out= 1167)(deflated 62%) adding: org/sbml/libsbml/ListOfCompartments.class(in = 2994) (out= 1165)(deflated 61%) adding: org/sbml/libsbml/ListOfConstraints.class(in = 2587) (out= 1089)(deflated 57%) adding: org/sbml/libsbml/ListOfCurveElements.class(in = 4943) (out= 1698)(deflated 65%) adding: org/sbml/libsbml/ListOfDeletions.class(in = 3128) (out= 1218)(deflated 61%) adding: org/sbml/libsbml/ListOfDrawables.class(in = 5521) (out= 1874)(deflated 66%) adding: org/sbml/libsbml/ListOfEventAssignments.class(in = 3341) (out= 1246)(deflated 62%) adding: org/sbml/libsbml/ListOfEvents.class(in = 2856) (out= 1156)(deflated 59%) adding: org/sbml/libsbml/ListOfExternalModelDefinitions.class(in = 3503) (out= 1237)(deflated 64%) adding: org/sbml/libsbml/ListOfFbcAssociations.class(in = 4553) (out= 1577)(deflated 65%) adding: org/sbml/libsbml/ListOfFluxBounds.class(in = 3291) (out= 1256)(deflated 61%) adding: org/sbml/libsbml/ListOfFluxObjectives.class(in = 4110) (out= 1431)(deflated 65%) adding: org/sbml/libsbml/ListOfFunctionDefinitions.class(in = 3155) (out= 1170)(deflated 62%) adding: org/sbml/libsbml/ListOfFunctionTerms.class(in = 4367) (out= 1506)(deflated 65%) adding: org/sbml/libsbml/ListOfGeneAssociations.class(in = 3447) (out= 1265)(deflated 63%) adding: org/sbml/libsbml/ListOfGeneProducts.class(in = 4028) (out= 1430)(deflated 64%) adding: org/sbml/libsbml/ListOfGlobalRenderInformation.class(in = 9171) (out= 2530)(deflated 72%) adding: org/sbml/libsbml/ListOfGlobalStyles.class(in = 4584) (out= 1588)(deflated 65%) adding: org/sbml/libsbml/ListOfGradientDefinitions.class(in = 5107) (out= 1687)(deflated 66%) adding: org/sbml/libsbml/ListOfGradientStops.class(in = 4662) (out= 1601)(deflated 65%) adding: org/sbml/libsbml/ListOfGraphicalObjects.class(in = 3788) (out= 1375)(deflated 63%) adding: org/sbml/libsbml/ListOfGroups.class(in = 3944) (out= 1458)(deflated 63%) adding: org/sbml/libsbml/ListOfInSpeciesTypeBonds.class(in = 3617) (out= 1294)(deflated 64%) adding: org/sbml/libsbml/ListOfInitialAssignments.class(in = 3389) (out= 1249)(deflated 63%) adding: org/sbml/libsbml/ListOfInputs.class(in = 3340) (out= 1288)(deflated 61%) adding: org/sbml/libsbml/ListOfLayouts.class(in = 3591) (out= 1368)(deflated 61%) adding: org/sbml/libsbml/ListOfLineEndings.class(in = 4715) (out= 1629)(deflated 65%) adding: org/sbml/libsbml/ListOfLineSegments.class(in = 3149) (out= 1260)(deflated 59%) adding: org/sbml/libsbml/ListOfLocalParameters.class(in = 3691) (out= 1304)(deflated 64%) adding: org/sbml/libsbml/ListOfLocalRenderInformation.class(in = 8512) (out= 2388)(deflated 71%) adding: org/sbml/libsbml/ListOfLocalStyles.class(in = 4539) (out= 1586)(deflated 65%) adding: org/sbml/libsbml/ListOfMembers.class(in = 5108) (out= 1755)(deflated 65%) adding: org/sbml/libsbml/ListOfModelDefinitions.class(in = 3303) (out= 1225)(deflated 62%) adding: org/sbml/libsbml/ListOfMultiSpeciesTypes.class(in = 3540) (out= 1291)(deflated 63%) adding: org/sbml/libsbml/ListOfObjectives.class(in = 5186) (out= 1715)(deflated 66%) adding: org/sbml/libsbml/ListOfOutputs.class(in = 3367) (out= 1289)(deflated 61%) adding: org/sbml/libsbml/ListOfOutwardBindingSites.class(in = 3644) (out= 1294)(deflated 64%) adding: org/sbml/libsbml/ListOfParameters.class(in = 2948) (out= 1161)(deflated 60%) adding: org/sbml/libsbml/ListOfPorts.class(in = 3272) (out= 1295)(deflated 60%) adding: org/sbml/libsbml/ListOfPossibleSpeciesFeatureValues.class(in = 3887) (out= 1308)(deflated 66%) adding: org/sbml/libsbml/ListOfQualitativeSpecies.class(in = 3355) (out= 1230)(deflated 63%) adding: org/sbml/libsbml/ListOfReactionGlyphs.class(in = 3575) (out= 1330)(deflated 62%) adding: org/sbml/libsbml/ListOfReactions.class(in = 2875) (out= 1145)(deflated 60%) adding: org/sbml/libsbml/ListOfReferenceGlyphs.class(in = 3602) (out= 1335)(deflated 62%) adding: org/sbml/libsbml/ListOfReplacedElements.class(in = 2899) (out= 1157)(deflated 60%) adding: org/sbml/libsbml/ListOfRules.class(in = 2940) (out= 1187)(deflated 59%) adding: org/sbml/libsbml/ListOfSpecies.class(in = 2882) (out= 1157)(deflated 59%) adding: org/sbml/libsbml/ListOfSpeciesFeatureTypes.class(in = 3644) (out= 1292)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatureValues.class(in = 3671) (out= 1295)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesFeatures.class(in = 5444) (out= 1681)(deflated 69%) adding: org/sbml/libsbml/ListOfSpeciesGlyphs.class(in = 3548) (out= 1326)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesReferenceGlyphs.class(in = 3791) (out= 1345)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesReferences.class(in = 3184) (out= 1198)(deflated 62%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentIndexes.class(in = 3699) (out= 1270)(deflated 65%) adding: org/sbml/libsbml/ListOfSpeciesTypeComponentMapInProducts.class(in = 4022) (out= 1311)(deflated 67%) adding: org/sbml/libsbml/ListOfSpeciesTypeInstances.class(in = 3671) (out= 1293)(deflated 64%) adding: org/sbml/libsbml/ListOfSpeciesTypes.class(in = 2994) (out= 1161)(deflated 61%) adding: org/sbml/libsbml/ListOfSubmodels.class(in = 3128) (out= 1219)(deflated 61%) adding: org/sbml/libsbml/ListOfTextGlyphs.class(in = 3467) (out= 1327)(deflated 61%) adding: org/sbml/libsbml/ListOfTransitions.class(in = 3321) (out= 1253)(deflated 62%) adding: org/sbml/libsbml/ListOfUnitDefinitions.class(in = 3317) (out= 1242)(deflated 62%) adding: org/sbml/libsbml/ListOfUnits.class(in = 2473) (out= 1083)(deflated 56%) adding: org/sbml/libsbml/LocalParameter.class(in = 3267) (out= 1241)(deflated 62%) adding: org/sbml/libsbml/LocalRenderInformation.class(in = 6918) (out= 2101)(deflated 69%) adding: org/sbml/libsbml/LocalStyle.class(in = 4166) (out= 1558)(deflated 62%) adding: org/sbml/libsbml/MathFilter.class(in = 1748) (out= 892)(deflated 48%) adding: org/sbml/libsbml/Member.class(in = 4569) (out= 1689)(deflated 63%) adding: org/sbml/libsbml/Model.class(in = 35496) (out= 9119)(deflated 74%) adding: org/sbml/libsbml/ModelCreator.class(in = 5090) (out= 1710)(deflated 66%) adding: org/sbml/libsbml/ModelCreatorList.class(in = 1678) (out= 759)(deflated 54%) adding: org/sbml/libsbml/ModelDefinition.class(in = 2704) (out= 1108)(deflated 59%) adding: org/sbml/libsbml/ModelHistory.class(in = 4242) (out= 1519)(deflated 64%) adding: org/sbml/libsbml/ModifierSpeciesReference.class(in = 2180) (out= 964)(deflated 55%) adding: org/sbml/libsbml/MultiASTPlugin.class(in = 5650) (out= 1802)(deflated 68%) adding: org/sbml/libsbml/MultiCompartmentPlugin.class(in = 5980) (out= 1801)(deflated 69%) adding: org/sbml/libsbml/MultiExtension.class(in = 7308) (out= 2833)(deflated 61%) adding: org/sbml/libsbml/MultiListOfReactionsPlugin.class(in = 2443) (out= 1010)(deflated 58%) adding: org/sbml/libsbml/MultiModelPlugin.class(in = 4870) (out= 1625)(deflated 66%) adding: org/sbml/libsbml/MultiPkgNamespaces.class(in = 2418) (out= 1052)(deflated 56%) adding: org/sbml/libsbml/MultiSBMLDocumentPlugin.class(in = 1991) (out= 907)(deflated 54%) adding: org/sbml/libsbml/MultiSimpleSpeciesReferencePlugin.class(in = 3870) (out= 1285)(deflated 66%) adding: org/sbml/libsbml/MultiSpeciesPlugin.class(in = 8300) (out= 2308)(deflated 72%) adding: org/sbml/libsbml/MultiSpeciesReferencePlugin.class(in = 5213) (out= 1578)(deflated 69%) adding: org/sbml/libsbml/MultiSpeciesType.class(in = 11895) (out= 3120)(deflated 73%) adding: org/sbml/libsbml/OFStream.class(in = 1741) (out= 827)(deflated 52%) adding: org/sbml/libsbml/OStream.class(in = 1454) (out= 793)(deflated 45%) adding: org/sbml/libsbml/OStringStream.class(in = 1283) (out= 680)(deflated 46%) adding: org/sbml/libsbml/Objective.class(in = 6115) (out= 2045)(deflated 66%) adding: org/sbml/libsbml/Output.class(in = 4961) (out= 1747)(deflated 64%) adding: org/sbml/libsbml/OutwardBindingSite.class(in = 5096) (out= 1684)(deflated 66%) adding: org/sbml/libsbml/Parameter.class(in = 4872) (out= 1736)(deflated 64%) adding: org/sbml/libsbml/Point.class(in = 5462) (out= 1963)(deflated 64%) adding: org/sbml/libsbml/Polygon.class(in = 5269) (out= 1913)(deflated 63%) adding: org/sbml/libsbml/Port.class(in = 3662) (out= 1458)(deflated 60%) adding: org/sbml/libsbml/PossibleSpeciesFeatureValue.class(in = 4833) (out= 1571)(deflated 67%) adding: org/sbml/libsbml/Priority.class(in = 3359) (out= 1346)(deflated 59%) adding: org/sbml/libsbml/QualExtension.class(in = 5325) (out= 2180)(deflated 59%) adding: org/sbml/libsbml/QualModelPlugin.class(in = 6578) (out= 2014)(deflated 69%) adding: org/sbml/libsbml/QualPkgNamespaces.class(in = 2400) (out= 1051)(deflated 56%) adding: org/sbml/libsbml/QualitativeSpecies.class(in = 5890) (out= 1862)(deflated 68%) adding: org/sbml/libsbml/RDFAnnotationParser.class(in = 5011) (out= 1512)(deflated 69%) adding: org/sbml/libsbml/RadialGradient.class(in = 8930) (out= 2422)(deflated 72%) adding: org/sbml/libsbml/RateRule.class(in = 1986) (out= 955)(deflated 51%) adding: org/sbml/libsbml/Reaction.class(in = 11751) (out= 3300)(deflated 71%) adding: org/sbml/libsbml/ReactionGlyph.class(in = 7746) (out= 2448)(deflated 68%) adding: org/sbml/libsbml/Rectangle.class(in = 9616) (out= 2668)(deflated 72%) adding: org/sbml/libsbml/ReferenceGlyph.class(in = 6359) (out= 2136)(deflated 66%) adding: org/sbml/libsbml/RelAbsVector.class(in = 3783) (out= 1333)(deflated 64%) adding: org/sbml/libsbml/RenderCubicBezier.class(in = 9615) (out= 2415)(deflated 74%) adding: org/sbml/libsbml/RenderCurve.class(in = 6756) (out= 2268)(deflated 66%) adding: org/sbml/libsbml/RenderExtension.class(in = 7950) (out= 3054)(deflated 61%) adding: org/sbml/libsbml/RenderGraphicalObjectPlugin.class(in = 3414) (out= 1199)(deflated 64%) adding: org/sbml/libsbml/RenderGroup.class(in = 12789) (out= 3658)(deflated 71%) adding: org/sbml/libsbml/RenderInformationBase.class(in = 12818) (out= 3316)(deflated 74%) adding: org/sbml/libsbml/RenderLayoutPlugin.class(in = 5029) (out= 1616)(deflated 67%) adding: org/sbml/libsbml/RenderListOfLayoutsPlugin.class(in = 4944) (out= 1550)(deflated 68%) adding: org/sbml/libsbml/RenderPkgNamespaces.class(in = 2436) (out= 1051)(deflated 56%) adding: org/sbml/libsbml/RenderPoint.class(in = 6931) (out= 2125)(deflated 69%) adding: org/sbml/libsbml/ReplacedBy.class(in = 2708) (out= 1156)(deflated 57%) adding: org/sbml/libsbml/ReplacedElement.class(in = 4133) (out= 1480)(deflated 64%) adding: org/sbml/libsbml/Replacing.class(in = 2454) (out= 1018)(deflated 58%) adding: org/sbml/libsbml/Rule.class(in = 5597) (out= 2024)(deflated 63%) adding: org/sbml/libsbml/SBMLConstructorException.class(in = 1861) (out= 837)(deflated 55%) adding: org/sbml/libsbml/SBMLConverter.class(in = 4775) (out= 1646)(deflated 65%) adding: org/sbml/libsbml/SBMLConverterRegistry.class(in = 2188) (out= 883)(deflated 59%) adding: org/sbml/libsbml/SBMLDocument.class(in = 13268) (out= 3818)(deflated 71%) adding: org/sbml/libsbml/SBMLDocumentPlugin.class(in = 2430) (out= 1027)(deflated 57%) adding: org/sbml/libsbml/SBMLError.class(in = 2561) (out= 1018)(deflated 60%) adding: org/sbml/libsbml/SBMLErrorLog.class(in = 6190) (out= 1889)(deflated 69%) adding: org/sbml/libsbml/SBMLExtension.class(in = 5506) (out= 1814)(deflated 67%) adding: org/sbml/libsbml/SBMLExtensionException.class(in = 982) (out= 580)(deflated 40%) adding: org/sbml/libsbml/SBMLExtensionRegistry.class(in = 4984) (out= 1664)(deflated 66%) adding: org/sbml/libsbml/SBMLExternalValidator.class(in = 2951) (out= 1107)(deflated 62%) adding: org/sbml/libsbml/SBMLFileResolver.class(in = 2724) (out= 1067)(deflated 60%) adding: org/sbml/libsbml/SBMLFunctionDefinitionConverter.class(in = 2333) (out= 951)(deflated 59%) adding: org/sbml/libsbml/SBMLIdConverter.class(in = 2077) (out= 936)(deflated 54%) adding: org/sbml/libsbml/SBMLInferUnitsConverter.class(in = 2205) (out= 947)(deflated 57%) adding: org/sbml/libsbml/SBMLInitialAssignmentConverter.class(in = 2317) (out= 955)(deflated 58%) adding: org/sbml/libsbml/SBMLLevel1Version1Converter.class(in = 2269) (out= 951)(deflated 58%) adding: org/sbml/libsbml/SBMLLevelVersionConverter.class(in = 2776) (out= 1076)(deflated 61%) adding: org/sbml/libsbml/SBMLLocalParameterConverter.class(in = 2269) (out= 949)(deflated 58%) adding: org/sbml/libsbml/SBMLNamespaces.class(in = 5731) (out= 1955)(deflated 65%) adding: org/sbml/libsbml/SBMLNamespacesList.class(in = 1714) (out= 765)(deflated 55%) adding: org/sbml/libsbml/SBMLReactionConverter.class(in = 2483) (out= 1011)(deflated 59%) adding: org/sbml/libsbml/SBMLReader.class(in = 1933) (out= 956)(deflated 50%) adding: org/sbml/libsbml/SBMLResolver.class(in = 3171) (out= 1224)(deflated 61%) adding: org/sbml/libsbml/SBMLResolverRegistry.class(in = 3359) (out= 1200)(deflated 64%) adding: org/sbml/libsbml/SBMLRuleConverter.class(in = 2109) (out= 940)(deflated 55%) adding: org/sbml/libsbml/SBMLStripPackageConverter.class(in = 2657) (out= 1052)(deflated 60%) adding: org/sbml/libsbml/SBMLTransforms.class(in = 3702) (out= 1251)(deflated 66%) adding: org/sbml/libsbml/SBMLUnitsConverter.class(in = 2125) (out= 938)(deflated 55%) adding: org/sbml/libsbml/SBMLUri.class(in = 1944) (out= 905)(deflated 53%) adding: org/sbml/libsbml/SBMLValidator.class(in = 4409) (out= 1630)(deflated 63%) adding: org/sbml/libsbml/SBMLWriter.class(in = 2906) (out= 1189)(deflated 59%) adding: org/sbml/libsbml/SBO.class(in = 4172) (out= 1568)(deflated 62%) adding: org/sbml/libsbml/SBase.class(in = 19372) (out= 5488)(deflated 71%) adding: org/sbml/libsbml/SBaseExtensionPoint.class(in = 2360) (out= 957)(deflated 59%) adding: org/sbml/libsbml/SBaseList.class(in = 1552) (out= 753)(deflated 51%) adding: org/sbml/libsbml/SBasePlugin.class(in = 7116) (out= 2335)(deflated 67%) adding: org/sbml/libsbml/SBaseRef.class(in = 6424) (out= 2151)(deflated 66%) adding: org/sbml/libsbml/SWIGTYPE_p_ExpectedAttributes.class(in = 501) (out= 320)(deflated 36%) adding: org/sbml/libsbml/SWIGTYPE_p_FormulaUnitsData.class(in = 495) (out= 318)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_List.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_PrefixTransformer.class(in = 498) (out= 319)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_StringBuffer_t.class(in = 489) (out= 317)(deflated 35%) adding: org/sbml/libsbml/SWIGTYPE_p_UnitFormulaFormatter.class(in = 507) (out= 318)(deflated 37%) adding: org/sbml/libsbml/SWIGTYPE_p_double.class(in = 465) (out= 309)(deflated 33%) adding: org/sbml/libsbml/SWIGTYPE_p_f_p_Model_p_SBMLErrorLog_p_void__int.class(in = 555) (out= 332)(deflated 40%) adding: org/sbml/libsbml/SWIGTYPE_p_int.class(in = 456) (out= 307)(deflated 32%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntry.class(in = 513) (out= 319)(deflated 37%) adding: org/sbml/libsbml/SWIGTYPE_p_packageErrorTableEntryV2.class(in = 519) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__ostream.class(in = 483) (out= 315)(deflated 34%) adding: org/sbml/libsbml/SWIGTYPE_p_std__stringstream.class(in = 498) (out= 316)(deflated 36%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_ASTBasePlugin_p_t.class(in = 537) (out= 327)(deflated 39%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_XMLError_p_t.class(in = 522) (out= 323)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_std__string_t.class(in = 525) (out= 321)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_std__vectorT_unsigned_int_t.class(in = 528) (out= 326)(deflated 38%) adding: org/sbml/libsbml/SWIGTYPE_p_void.class(in = 459) (out= 309)(deflated 32%) adding: org/sbml/libsbml/SimpleSpeciesReference.class(in = 2764) (out= 996)(deflated 63%) adding: org/sbml/libsbml/Species.class(in = 8738) (out= 2605)(deflated 70%) adding: org/sbml/libsbml/SpeciesFeature.class(in = 7330) (out= 2264)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureType.class(in = 6584) (out= 2012)(deflated 69%) adding: org/sbml/libsbml/SpeciesFeatureValue.class(in = 3695) (out= 1351)(deflated 63%) adding: org/sbml/libsbml/SpeciesGlyph.class(in = 4330) (out= 1540)(deflated 64%) adding: org/sbml/libsbml/SpeciesReference.class(in = 5418) (out= 1746)(deflated 67%) adding: org/sbml/libsbml/SpeciesReferenceGlyph.class(in = 7021) (out= 2225)(deflated 68%) adding: org/sbml/libsbml/SpeciesType.class(in = 2908) (out= 1182)(deflated 59%) adding: org/sbml/libsbml/SpeciesTypeComponentIndex.class(in = 5258) (out= 1667)(deflated 68%) adding: org/sbml/libsbml/SpeciesTypeComponentMapInProduct.class(in = 6089) (out= 1768)(deflated 70%) adding: org/sbml/libsbml/SpeciesTypeInstance.class(in = 5046) (out= 1649)(deflated 67%) adding: org/sbml/libsbml/StoichiometryMath.class(in = 4003) (out= 1469)(deflated 63%) adding: org/sbml/libsbml/StringSet.class(in = 1985) (out= 859)(deflated 56%) adding: org/sbml/libsbml/Style.class(in = 5742) (out= 2031)(deflated 64%) adding: org/sbml/libsbml/SubListOfSpeciesFeatures.class(in = 6184) (out= 1876)(deflated 69%) adding: org/sbml/libsbml/Submodel.class(in = 9899) (out= 3053)(deflated 69%) adding: org/sbml/libsbml/SyntaxChecker.class(in = 2141) (out= 930)(deflated 56%) adding: org/sbml/libsbml/Text.class(in = 10193) (out= 3018)(deflated 70%) adding: org/sbml/libsbml/TextGlyph.class(in = 4948) (out= 1709)(deflated 65%) adding: org/sbml/libsbml/Transformation.class(in = 4838) (out= 1686)(deflated 65%) adding: org/sbml/libsbml/Transformation2D.class(in = 3752) (out= 1416)(deflated 62%) adding: org/sbml/libsbml/Transition.class(in = 10792) (out= 3170)(deflated 70%) adding: org/sbml/libsbml/Trigger.class(in = 4295) (out= 1601)(deflated 62%) adding: org/sbml/libsbml/Unit.class(in = 8598) (out= 2838)(deflated 66%) adding: org/sbml/libsbml/UnitDefinition.class(in = 8690) (out= 2612)(deflated 69%) adding: org/sbml/libsbml/XMLAttributes.class(in = 6018) (out= 1771)(deflated 70%) adding: org/sbml/libsbml/XMLConstructorException.class(in = 1151) (out= 645)(deflated 43%) adding: org/sbml/libsbml/XMLError.class(in = 4407) (out= 1657)(deflated 62%) adding: org/sbml/libsbml/XMLErrorLog.class(in = 4259) (out= 1569)(deflated 63%) adding: org/sbml/libsbml/XMLInputStream.class(in = 4725) (out= 1592)(deflated 66%) adding: org/sbml/libsbml/XMLNamespaces.class(in = 4126) (out= 1452)(deflated 64%) adding: org/sbml/libsbml/XMLNode.class(in = 8015) (out= 2404)(deflated 70%) adding: org/sbml/libsbml/XMLOutputStream.class(in = 9117) (out= 2520)(deflated 72%) adding: org/sbml/libsbml/XMLOwningOutputFileStream.class(in = 1990) (out= 791)(deflated 60%) adding: org/sbml/libsbml/XMLOwningOutputStringStream.class(in = 1701) (out= 740)(deflated 56%) adding: org/sbml/libsbml/XMLToken.class(in = 12792) (out= 3352)(deflated 73%) adding: org/sbml/libsbml/XMLTriple.class(in = 2455) (out= 1081)(deflated 55%) adding: org/sbml/libsbml/double_array.class(in = 1695) (out= 841)(deflated 50%) adding: org/sbml/libsbml/int_array.class(in = 1644) (out= 842)(deflated 48%) adding: org/sbml/libsbml/libsbml.class(in = 16369) (out= 5851)(deflated 64%) adding: org/sbml/libsbml/libsbmlConstants.class(in = 67411) (out= 22005)(deflated 67%) adding: org/sbml/libsbml/libsbmlJNI.class(in = 449315) (out= 83587)(deflated 81%) make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' Creating: libsbml.jar /usr/bin/javac -cp /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java -source;1.6;-target;1.6 -d /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/test test/org/sbml/libsbml/test/annotation/TestCVTerms.java;test/org/sbml/libsbml/test/annotation/TestCVTerms_newSetters.java;test/org/sbml/libsbml/test/annotation/TestCopyAndClone.java;test/org/sbml/libsbml/test/annotation/TestDate_newSetters.java;test/org/sbml/libsbml/test/annotation/TestL3ModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelCreator_newSetters.java;test/org/sbml/libsbml/test/annotation/TestModelHistory.java;test/org/sbml/libsbml/test/annotation/TestModelHistory_newSetters.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotation2.java;test/org/sbml/libsbml/test/annotation/TestRDFAnnotationC.java;test/org/sbml/libsbml/test/annotation/TestValidation.java;test/org/sbml/libsbml/test/math/TestASTNode.java;test/org/sbml/libsbml/test/math/TestReadFromFile1.java;test/org/sbml/libsbml/test/math/TestReadFromFile2.java;test/org/sbml/libsbml/test/math/TestReadMathML.java;test/org/sbml/libsbml/test/math/TestValidASTNode.java;test/org/sbml/libsbml/test/math/TestWriteMathML.java;test/org/sbml/libsbml/test/sbml/TestAlgebraicRule.java;test/org/sbml/libsbml/test/sbml/TestAncestor.java;test/org/sbml/libsbml/test/sbml/TestAssignmentRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType.java;test/org/sbml/libsbml/test/sbml/TestCompartmentType_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCompartmentVolumeRule.java;test/org/sbml/libsbml/test/sbml/TestCompartment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestConstraint.java;test/org/sbml/libsbml/test/sbml/TestConstraint_newSetters.java;test/org/sbml/libsbml/test/sbml/TestCopyAndClone.java;test/org/sbml/libsbml/test/sbml/TestDelay.java;test/org/sbml/libsbml/test/sbml/TestEvent.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment.java;test/org/sbml/libsbml/test/sbml/TestEventAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestEvent_newSetters.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition.java;test/org/sbml/libsbml/test/sbml/TestFunctionDefinition_newSetters.java;test/org/sbml/libsbml/test/sbml/TestGetMultipleObjects.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment.java;test/org/sbml/libsbml/test/sbml/TestInitialAssignment_newSetters.java;test/org/sbml/libsbml/test/sbml/TestInternalConsistencyChecks.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw.java;test/org/sbml/libsbml/test/sbml/TestKineticLaw_newSetters.java;test/org/sbml/libsbml/test/sbml/TestL3Compartment.java;test/org/sbml/libsbml/test/sbml/TestL3Event.java;test/org/sbml/libsbml/test/sbml/TestL3KineticLaw.java;test/org/sbml/libsbml/test/sbml/TestL3LocalParameter.java;test/org/sbml/libsbml/test/sbml/TestL3Model.java;test/org/sbml/libsbml/test/sbml/TestL3Parameter.java;test/org/sbml/libsbml/test/sbml/TestL3Reaction.java;test/org/sbml/libsbml/test/sbml/TestL3Species.java;test/org/sbml/libsbml/test/sbml/TestL3SpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestL3Trigger.java;test/org/sbml/libsbml/test/sbml/TestL3Unit.java;test/org/sbml/libsbml/test/sbml/TestListOf.java;test/org/sbml/libsbml/test/sbml/TestModel.java;test/org/sbml/libsbml/test/sbml/TestModel_newSetters.java;test/org/sbml/libsbml/test/sbml/TestModifierSpeciesReference.java;test/org/sbml/libsbml/test/sbml/TestParameter.java;test/org/sbml/libsbml/test/sbml/TestParameterRule.java;test/org/sbml/libsbml/test/sbml/TestParameter_newSetters.java;test/org/sbml/libsbml/test/sbml/TestPriority.java;test/org/sbml/libsbml/test/sbml/TestRateRule.java;test/org/sbml/libsbml/test/sbml/TestReaction.java;test/org/sbml/libsbml/test/sbml/TestReaction_newSetters.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile1.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile2.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile3.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile4.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile5.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile6.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile7.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile8.java;test/org/sbml/libsbml/test/sbml/TestReadFromFile9.java;test/org/sbml/libsbml/test/sbml/TestReadSBML.java;test/org/sbml/libsbml/test/sbml/TestRequiredAttributes.java;test/org/sbml/libsbml/test/sbml/TestRequiredElements.java;test/org/sbml/libsbml/test/sbml/TestRule.java;test/org/sbml/libsbml/test/sbml/TestRule_newSetters.java;test/org/sbml/libsbml/test/sbml/TestSBMLConstructorException.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvert.java;test/org/sbml/libsbml/test/sbml/TestSBMLConvertStrict.java;test/org/sbml/libsbml/test/sbml/TestSBMLDocument.java;test/org/sbml/libsbml/test/sbml/TestSBMLError.java;test/org/sbml/libsbml/test/sbml/TestSBMLNamespaces.java;test/org/sbml/libsbml/test/sbml/TestSBMLParentObject.java;test/org/sbml/libsbml/test/sbml/TestSBMLTransforms.java;test/org/sbml/libsbml/test/sbml/TestSBase.java;test/org/sbml/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warning: [options] bootstrap class path not set in conjunction with -source 6 warning: [options] source value 6 is obsolete and will be removed in a future release warning: [options] target value 1.6 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 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src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp: In member function 'Date::parseDateNumbersToString()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 6 and 23 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: '__snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' 10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: '__snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp: In member function 'Date::parseDateNumbersToString()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: '%u' directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 6 and 23 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: 'T' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: '__snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ':' directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 4 and 12 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: '__snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.h:238, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.h:121, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.h:155, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.h:188, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/Date.cpp:39: /usr/include/bits/stdio2.h:70:35: note: '__snprintf_chk' output between 3 and 11 bytes into a destination of size 10 70 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:44, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:472:5: note: in expansion of macro 'RENDER_CREATE_NS' 472 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:500:5: note: in expansion of macro 'RENDER_CREATE_NS' 500 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:63, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:60, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/Layout.h:62, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:44, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderPoint* RenderCurve::createPoint()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:472:5: note: in expansion of macro 'RENDER_CREATE_NS' 472 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function 'RenderCubicBezier* RenderCurve::createCubicBezier()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:500:5: note: in expansion of macro 'RENDER_CREATE_NS' 500 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/RegisterConverters.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/ConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:733:5: note: in expansion of macro 'RENDER_CREATE_NS' 733 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:895:5: note: in expansion of macro 'RENDER_CREATE_NS' 895 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:923:5: note: in expansion of macro 'RENDER_CREATE_NS' 923 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1085:5: note: in expansion of macro 'RENDER_CREATE_NS' 1085 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLIdConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/ConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:592:3: note: in expansion of macro 'RENDER_CREATE_NS' 592 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1264:3: note: in expansion of macro 'RENDER_CREATE_NS' 1264 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/ConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:73, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'ColorDefinition* RenderInformationBase::createColorDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:733:5: note: in expansion of macro 'RENDER_CREATE_NS' 733 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LinearGradient* RenderInformationBase::createLinearGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:895:5: note: in expansion of macro 'RENDER_CREATE_NS' 895 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'RadialGradient* RenderInformationBase::createRadialGradientDefinition()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:923:5: note: in expansion of macro 'RENDER_CREATE_NS' 923 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function 'LineEnding* RenderInformationBase::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1085:5: note: in expansion of macro 'RENDER_CREATE_NS' 1085 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.h:68, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'RenderGroup* Style::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:592:3: note: in expansion of macro 'RENDER_CREATE_NS' 592 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function 'virtual SBase* Style::createObject(XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1264:3: note: in expansion of macro 'RENDER_CREATE_NS' 1264 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLReactionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1113:5: note: in expansion of macro 'RENDER_CREATE_NS' 1113 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1141:5: note: in expansion of macro 'RENDER_CREATE_NS' 1141 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1169:5: note: in expansion of macro 'RENDER_CREATE_NS' 1169 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1197:5: note: in expansion of macro 'RENDER_CREATE_NS' 1197 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1225:5: note: in expansion of macro 'RENDER_CREATE_NS' 1225 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1253:5: note: in expansion of macro 'RENDER_CREATE_NS' 1253 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1281:5: note: in expansion of macro 'RENDER_CREATE_NS' 1281 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1309:5: note: in expansion of macro 'RENDER_CREATE_NS' 1309 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2626:3: note: in expansion of macro 'RENDER_CREATE_NS' 2626 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:55, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:59, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:66, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:71, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:38: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Image* RenderGroup::createImage()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1113:5: note: in expansion of macro 'RENDER_CREATE_NS' 1113 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Ellipse* RenderGroup::createEllipse()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1141:5: note: in expansion of macro 'RENDER_CREATE_NS' 1141 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Rectangle* RenderGroup::createRectangle()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1169:5: note: in expansion of macro 'RENDER_CREATE_NS' 1169 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Polygon* RenderGroup::createPolygon()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1197:5: note: in expansion of macro 'RENDER_CREATE_NS' 1197 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderGroup* RenderGroup::createGroup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1225:5: note: in expansion of macro 'RENDER_CREATE_NS' 1225 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'LineEnding* RenderGroup::createLineEnding()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1253:5: note: in expansion of macro 'RENDER_CREATE_NS' 1253 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'Text* RenderGroup::createText()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1281:5: note: in expansion of macro 'RENDER_CREATE_NS' 1281 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'RenderCurve* RenderGroup::createCurve()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1309:5: note: in expansion of macro 'RENDER_CREATE_NS' 1309 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function 'void RenderGroup::importOldCurve(const XMLNode&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:116:32: warning: catching polymorphic type 'class SBMLExtensionException' by value [-Wcatch-value=] 116 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.h:132:3: note: in expansion of macro 'EXTENSION_CREATE_NS_WITH_VERSION' 132 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension/RenderExtension.h:61:3: note: in expansion of macro 'EXTENSION_CREATE_NS' 61 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2626:3: note: in expansion of macro 'RENDER_CREATE_NS' 2626 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:405:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 405 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:421:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 421 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor 'ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:472:24: warning: 'ASTBasePlugin::mExtendedMathType' will be initialized after [-Wreorder] 472 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:471:34: warning: 'std::vector ASTBasePlugin::mPkgASTNodeValues' [-Wreorder] 471 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:296:1: warning: when initialized here [-Wreorder] 296 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:405:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 405 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp: In function 'AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AlgebraicRule.cpp:421:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 421 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:529:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 529 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:545:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 545 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:529:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 529 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp: In function 'AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/AssignmentRule.cpp:545:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 545 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor 'ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:472:24: warning: 'ASTBasePlugin::mExtendedMathType' will be initialized after [-Wreorder] 472 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.h:471:34: warning: 'std::vector ASTBasePlugin::mPkgASTNodeValues' [-Wreorder] 471 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/ASTBasePlugin.cpp:296:1: warning: when initialized here [-Wreorder] 296 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:888:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 888 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:904:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 904 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:888:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 888 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp: In function 'Delay_t* Delay_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Delay.cpp:904:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 904 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:880:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 880 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:896:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 896 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:880:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 880 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp: In function 'CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/CompartmentType.cpp:896:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 896 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1140:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1156:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1156 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1140:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp: In function 'Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Constraint.cpp:1156:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1156 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:435:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 435 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:451:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 451 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:832:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 832 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:848:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 848 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:363:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 363 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:832:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 832 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp: In function 'LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/LocalParameter.cpp:848:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 848 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:435:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 435 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function 'ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/ModifierSpeciesReference.cpp:451:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 451 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function 'bool SBMLExtensionRegistry::setEnabled(const string&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:363:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 363 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:527:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 527 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:543:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 543 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:736:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 736 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:752:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 752 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:527:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 527 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp: In function 'RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/RateRule.cpp:543:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 543 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:736:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 736 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp: In function 'Priority_t* Priority_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Priority.cpp:752:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 752 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1293:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1293 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1309:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1309 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1275:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1275 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1291:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1291 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1293:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1293 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp: In function 'EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/EventAssignment.cpp:1309:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1309 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1365:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1365 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1381:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1381 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1365:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1365 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp: In function 'FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/FunctionDefinition.cpp:1381:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1381 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1275:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1275 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp: In function 'InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/InitialAssignment.cpp:1291:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1291 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2067:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2067 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2083:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2083 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2067:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2067 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp: In function 'KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/KineticLaw.cpp:2083:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2083 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLTypeCodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building C object src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2374:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2374 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2374:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2374 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp: In function 'Event_t* Event_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLVisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2105:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2105 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2121:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2121 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLTypeCodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2105:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2105 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp: In function 'Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Compartment.cpp:2121:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2121 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLReader.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static int DefinitionURLRegistry::addDefinitionURL(const string&, int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:77:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 77 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:101:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 101 | if (i == index) | ~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SimpleSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:642:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 642 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:658:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 658 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/ElementFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLConvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1012:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1028:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1912:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1912 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1928:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1928 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1944:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1944 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1960:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1960 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1976:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1992:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1912:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1912 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1928:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1928 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignment(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1944:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1944 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1960:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1960 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRate(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1976:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp: In function 'Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Rule.cpp:1992:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/CallbackRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/CallbackRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/CallbackRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SimpleSpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:878:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 878 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:894:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 894 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/Stack.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2679:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2679 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:1994:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1994 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:2010:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2010 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/memory.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/memory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBO.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building C object src/CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/StringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2679:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2679 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp: In function 'Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:642:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 642 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp: In function 'StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/StoichiometryMath.cpp:658:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 658 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/List.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/List.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:1994:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1994 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp: In function 'Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Parameter.cpp:2010:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2010 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBO.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static int DefinitionURLRegistry::addDefinitionURL(const string&, int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:77:30: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 77 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function 'static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:101:11: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 101 | if (i == index) | ~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/IdFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:878:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 878 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp: In function 'SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesType.cpp:894:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 894 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1012:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp: In function 'Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Trigger.cpp:1028:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/ElementFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1973:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1973 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1989:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1989 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2005:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2005 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2021:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2021 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/FormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/MathFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/MathFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/MathFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/util/MetaIdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/MetaIdFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1973:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1973 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:1989:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 1989 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2005:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2005 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp: In function 'SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SpeciesReference.cpp:2021:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2021 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/IdentifierTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/IdentifierTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/Stack.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/Stack.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2299:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2299 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2315:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2315 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2331:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2331 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/List.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/List.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/List.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building C object src/CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/StringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/StringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building C object src/CMakeFiles/sbml.dir/sbml/util/memory.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/L3FormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2714:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2714 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2730:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2730 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2440:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2456:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/MathFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/MathFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/FormulaUnitsData.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/MetaIdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/MetaIdFilter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/MetaIdFilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_create()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2299:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2299 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2315:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2315 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2331:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2331 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/IdList.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/IdList.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/PrefixTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/OverdeterminedValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/MathMLConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2440:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2456:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2714:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2714 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp: In function 'Unit_t* Unit_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Unit.cpp:2730:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2730 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/SBMLValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/ModelingPracticeValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/IdentifierConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2661 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2677 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/UnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2661:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2661 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp: In function 'Species_t* Species_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Species.cpp:2677:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 2677 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/SBMLInternalValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/InternalConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/VConstraint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/L3Parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7414:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7414 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7430:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7430 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/CiElementNot0DComp.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/CiElementMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_create(unsigned int, unsigned int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7414:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7414 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp: In function 'Model_t* Model_createWithNS(SBMLNamespaces_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/Model.cpp:7430:10: warning: catching polymorphic type 'class SBMLConstructorException' by value [-Wcatch-value=] 7430 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/UnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:399:18: warning: unused variable 'version' [-Wunused-variable] 399 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:419:16: warning: unused variable 'n' [-Wunused-variable] 419 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'ASTNode* readMathML(XMLInputStream&, std::string, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:2168:21: warning: unused variable 'name' [-Wunused-variable] 2168 | const string& name = element1.getName(); | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/FunctionDefinitionVars.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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src/CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/KineticLawVars.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/ModelingPracticeValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/LambdaMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:399:18: warning: unused variable 'version' [-Wunused-variable] 399 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:419:16: warning: unused variable 'n' [-Wunused-variable] 419 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp: In function 'ASTNode* readMathML(XMLInputStream&, std::string, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/MathML.cpp:2168:21: warning: unused variable 'name' [-Wunused-variable] 2168 | const string& name = element1.getName(); | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/SBMLInternalValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/Validator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/NumberArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/CompressCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/ReportEmptyListOf.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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-c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi_mem.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In member function 'virtual void SBase::writeAttributes(XMLOutputStream&) const': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:5939:16: warning: unused variable 'pkgCoreVersion' [-Wunused-variable] 5939 | unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/UnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/StoichiometryMathVars.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/ioapi.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /usr/include/string.h:519, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:15: In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5: /usr/include/bits/string_fortified.h:106:10: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'file_build_ioposix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-o CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/ConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common 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Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML 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src/CMakeFiles/sbml-static.dir/sbml/xml/XMLMemoryBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLMemoryBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLMemoryBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/SBOConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/bzfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueVarsInRules.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml-static.dir/sbml/compress/unzip.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/compress/unzip.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/unzip.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueMetaId.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLFileBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLFileBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building C object src/CMakeFiles/sbml-static.dir/sbml/compress/zip.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/FunctionDefinitionVars.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/AssignmentCycles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/Validator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 67%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/ioapi_mem.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/ioapi_mem.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi_mem.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/NumericReturnMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 67%] Building C object src/CMakeFiles/sbml.dir/sbml/compress/ioapi.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/ioapi.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /usr/include/string.h:519, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:15: In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5: /usr/include/bits/string_fortified.h:106:10: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'file_build_ioposix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/NumberArgsMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/OutputCompressor.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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src/CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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src/CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/bzfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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src/CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/zipfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLFileBuffer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueMetaId.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:39: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:35: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:39: /usr/include/bits/stdio2.h:38:34: note: '__sprintf_chk' output between 14 and 60 bytes into a destination of size 17 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLToken.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function 'XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:39: warning: '%02d' directive writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-overflow=] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:991:35: note: directive argument in the range [-2147483647, 2147483647] 991 | sprintf(formattedDateAndTime, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/c++/10/cstdio:42, from /usr/include/c++/10/ext/string_conversions.h:43, from /usr/include/c++/10/bits/basic_string.h:6535, from /usr/include/c++/10/string:55, from /usr/include/c++/10/bits/locale_classes.h:40, from /usr/include/c++/10/bits/ios_base.h:41, from /usr/include/c++/10/ios:42, from /usr/include/c++/10/ostream:38, from /usr/include/c++/10/iostream:39, from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLOutputStream.cpp:39: /usr/include/bits/stdio2.h:38:34: note: '__sprintf_chk' output between 14 and 60 bytes into a destination of size 17 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Linking CXX static library libsbml-static.a cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cmake -P CMakeFiles/sbml-static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cmake -E cmake_link_script 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend.internal". Scanning dependencies of target test_sbml_annotation make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestMemory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestMemory.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestMemory.c: In function 'test_memory_safe_malloc_fn': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestMemory.c:59:10: warning: too many arguments for format [-Wformat-extra-args] 59 | fail("safe_malloc() should not return NULL"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/depend.internal". Scanning dependencies of target binding_r_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend.internal". Scanning dependencies of target binding_ruby_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend.internal". 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Scanning dependencies of target test_sbml_package_render make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStack.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStack.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStack.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStack.c: In function 'StackTest_setup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStack.c:53:10: warning: too many arguments for format [-Wformat-extra-args] 53 | fail("Stack_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestList.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestList.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestList.c: In function 'ListTest_setup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestList.c:53:10: warning: too many arguments for format [-Wformat-extra-args] 53 | fail("List_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStringBuffer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStringBuffer.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStringBuffer.c: In function 'StringBufferTest_setup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStringBuffer.c:54:10: warning: too many arguments for format [-Wformat-extra-args] 54 | fail("StringBuffer_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStringBuffer.c: In function 'test_StringBuffer_toString_fn': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestStringBuffer.c:352:10: warning: too many arguments for format [-Wformat-extra-args] 352 | fail("StringBuffer_toString() did not make a copy of its internal buffer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend.internal". Scanning dependencies of target binding_perl_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c:50: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c: In function 'test_util_NaN_fn': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c:264:24: warning: too many arguments for format [-Wformat-extra-args] 264 | fail_unless( d != d, "util_NaN() did not return NaN."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c: In function 'test_util_NegInf_fn': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c:276:10: warning: too many arguments for format [-Wformat-extra-args] 276 | fail("util_NegInf() did not return -Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c: In function 'test_util_PosInf_fn': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c:289:10: warning: too many arguments for format [-Wformat-extra-args] 289 | fail("util_PosInf() did not return +Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c: In function 'test_util_NegZero_fn': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test/TestUtil.c:300:23: warning: too many arguments for format [-Wformat-extra-args] 300 | fail_unless(d == 0, "util_NegZero() did not even return a zero!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend.internal". Scanning dependencies of target test_sbml_sbml make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestL3v2MathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test/TestConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp: In function 'void CompartmentGlyphTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:59:10: warning: too many arguments for format [-Wformat-extra-args] 59 | fail("new(std::nothrow) CompartmentGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp: In function 'void BoundingBoxTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:55:10: warning: too many arguments for format [-Wformat-extra-args] 55 | fail("BoundingBox(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp: In function 'void L3v2EMExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp: In function 'void test_comp_AttributeNamespaces_model_extraCompAtt_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp:771:17: warning: unused variable 'errors' [-Wunused-variable] 771 | SBMLErrorLog* errors = doc->getErrorLog(); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:34: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp: In function 'void GroupsExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Built target test_sbml_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test/TestRenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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'/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestChildFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestGetValue.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:13: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp: In function 'void FbcAssociationTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Failed to create a FbcAssociation object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 76%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp: In function 'void EllipseTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Ellipse(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:55: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp: In function 'void ColorDefinitionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)ColorDefinition(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions_undefined.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp: In function 'void QualExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:79:10: warning: too many arguments for format [-Wformat-extra-args] 79 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp: In function 'void DefaultTermTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Failed to create a DefaultTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp:50: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp: In function 'void test_RDFAnnotation2_modelWithHistoryAndCVTerms_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp: In function 'void CubicBezierTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("CubicBezier_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 79%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:56: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp: In function 'void GlobalRenderInformationTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestFormulaUnitsData_map.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:13: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp: In function 'void FbcExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:53:10: warning: too many arguments for format [-Wformat-extra-args] 53 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 82%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common 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src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:57: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp: In function 'void GlobalStyleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)GlobalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp: In function 'void CurveTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp:55:10: warning: too many arguments for format [-Wformat-extra-args] 55 | fail("Curve_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 82%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp: In function 'void FunctionTermTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Failed to create a FunctionTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLExceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp: In function 'void WriteL3v2EMExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp: At global scope: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:464:13: warning: 'test_L3v2EMExtension_read_disable_via_sbmldocument_and_write_L3V1V1' defined but not used [-Wunused-variable] 464 | START_TEST (test_L3v2EMExtension_read_disable_via_sbmldocument_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:381:13: warning: 'test_L3v2EMExtension_read_enable_via_sbmldocument_and_write_L3V1V1' defined but not used [-Wunused-variable] 381 | START_TEST (test_L3v2EMExtension_read_enable_via_sbmldocument_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:304:13: warning: 'test_L3v2EMExtension_read_disable_via_model_and_write_L3V1V1' defined but not used [-Wunused-variable] 304 | START_TEST (test_L3v2EMExtension_read_disable_via_model_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:220:13: warning: 'test_L3v2EMExtension_read_enable_via_model_and_write_L3V1V1' defined but not used [-Wunused-variable] 220 | START_TEST (test_L3v2EMExtension_read_enable_via_model_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 82%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:13: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp: In function 'void MultiExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:52:10: warning: too many arguments for format [-Wformat-extra-args] 52 | fail("Failed to create a MultiExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:50: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function 'void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function 'void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_31_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:473:10: warning: too many arguments for format [-Wformat-extra-args] 473 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestSBMLRuleConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp: In function 'void ListOfFunctionTermsTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Failed to create a ListOfFunctionTerms object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile1.cpp:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile1.cpp: In function 'void test_read_MathML_1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile1.cpp:98:10: warning: too many arguments for format [-Wformat-extra-args] 98 | fail("readSBML(\"mathML_1-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile2.cpp:49: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile2.cpp: In function 'void test_read_MathML_2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFile2.cpp:78:10: warning: too many arguments for format [-Wformat-extra-args] 78 | fail("readSBML(\"mathML_2-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp: In function 'void DimensionsTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:57:10: warning: too many arguments for format [-Wformat-extra-args] 57 | fail("new(std::nothrow)Dimensions() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp: In function 'void InputTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Failed to create a Input object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:55: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp: In function 'void GradientBaseTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp: In function 'void GradientStop_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)GradientStop(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUnitFormulaFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp: In function 'void WriteQualExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:77:8: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConsistencyChecks.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConsistencyChecks.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConsistencyChecks.cpp: In function 'void test_consistency_checks_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConsistencyChecks.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("readSBML(\"inconsistent.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConsistencyChecks.cpp: In function 'void test_strict_unit_consistency_checks_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConsistencyChecks.cpp:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("readSBML(\"l3v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:35: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp: In function 'void WriteGroupsExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:67:8: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:10: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp: In function 'void WriteFbcExtensionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:46:10: warning: too many arguments for format [-Wformat-extra-args] 46 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp:49: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp: In function 'void test_read_MathML_L3V2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("readSBML(\"L3V2Math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestCVTerms_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestCVTerms.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function 'void test_LevelCompatibility_unit_fails_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function 'void test_LevelCompatibility_unit_warnings_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp:102:10: warning: too many arguments for format [-Wformat-extra-args] 102 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function 'void test_LevelCompatibility_unit_fails_l1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function 'void test_LevelCompatibility_unit_warnings_l1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function 'void test_LevelCompatibility_unit_fails_l2v2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp:198:10: warning: too many arguments for format [-Wformat-extra-args] 198 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function 'void test_LevelCompatibility_unit_fails_l2v3_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestLevelCompatibility.cpp:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile5.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile5.cpp: In function 'void test_read_l2v1_assignment_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile5.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l2v1-assignment.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLErrorC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:55: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp: In function 'void GraphicalPrimitive1DTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestValidation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp: In function 'void test_ValidASTNode_Number_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp:169:7: warning: unused variable 'i' [-Wunused-variable] 169 | int i = n->addChild(d); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp: In function 'void test_ValidASTNode_Name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestValidASTNode.cpp:185:7: warning: unused variable 'i' [-Wunused-variable] 185 | int i = n->addChild(d); | ^ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile6.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile6.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile6.cpp: In function 'void test_read_l2v2_newComponents_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile6.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("readSBML(\"l2v2-newComponents.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function 'void DeletionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("Deletion_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function 'void test_comp_deletion_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Deletion_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("Deletion_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function 'void test_comp_deletion_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("Deletion_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:149:10: warning: too many arguments for format [-Wformat-extra-args] 149 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function 'void test_comp_deletion_metaid_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:170:10: warning: too many arguments for format [-Wformat-extra-args] 170 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function 'void test_GetMultipleObjects_getId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function 'void test_GetMultipleObjects_getMetaId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function 'void test_GetMultipleObjects_noLocalParameters_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:345:10: warning: too many arguments for format [-Wformat-extra-args] 345 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function 'void test_GetMultipleObjects_noUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:375:10: warning: too many arguments for format [-Wformat-extra-args] 375 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function 'void test_GetMultipleObjects_noAssignments_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:403:10: warning: too many arguments for format [-Wformat-extra-args] 403 | fail("readSBML(\"assignments-invalid.xml\") returned an empty model."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function 'void test_GetMultipleObjects_allElements_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:449:10: warning: too many arguments for format [-Wformat-extra-args] 449 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function 'void test_GetMultipleObjects_withFilter_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:485:10: warning: too many arguments for format [-Wformat-extra-args] 485 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp: In function 'void OutputTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Failed to create a Output object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLAttributesC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:47: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp: In function 'void GeneralGlyphTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("new(std::nothrow) GeneralGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1534:13: warning: 'test_element_implies' defined but not used [-Wunused-variable] 1534 | START_TEST (test_element_implies) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1515:13: warning: 'test_element_rem' defined but not used [-Wunused-variable] 1515 | START_TEST (test_element_rem) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1496:13: warning: 'test_element_quotient' defined but not used [-Wunused-variable] 1496 | START_TEST (test_element_quotient) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1477:13: warning: 'test_element_min' defined but not used [-Wunused-variable] 1477 | START_TEST (test_element_min) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestReadMathML.cpp:1458:13: warning: 'test_element_max' defined but not used [-Wunused-variable] 1458 | START_TEST (test_element_max) | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestWriteMathML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestDate_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUnitFormulaFormatter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 86%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:55: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp: In function 'void GraphicalPrimitive2DTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function 'void ExternalModelDefinitionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("ExternalModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function 'void test_comp_externalModelDefinition_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:112:10: warning: too many arguments for format [-Wformat-extra-args] 112 | fail("ExternalModelDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:122:10: warning: too many arguments for format [-Wformat-extra-args] 122 | fail("ExternalModelDefinition_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function 'void test_comp_externalModelDefinition_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("ExternalModelDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("ExternalModelDefinition_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function 'void test_comp_externalModelDefinition_modelRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("ExternalModelDefinition_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("ExternalModelDefinition_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function 'void test_comp_externalModelDefinition_source_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:205:10: warning: too many arguments for format [-Wformat-extra-args] 205 | fail("ExternalModelDefinition_setSource(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:215:10: warning: too many arguments for format [-Wformat-extra-args] 215 | fail("ExternalModelDefinition_unsetSource(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 86%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 86%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile7.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile7.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile7.cpp: In function 'void test_read_l2v3_all_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile7.cpp:106:10: warning: too many arguments for format [-Wformat-extra-args] 106 | fail("readSBML(\"l2v3-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLInputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNamespaces.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNamespaces.c:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNamespaces.c: In function 'void XMLNamespacesTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNamespaces.c:56:10: warning: too many arguments for format [-Wformat-extra-args] 56 | fail("XMLNamespacesTest_setup() failed to create a XMLNamespaces object."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile8.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile8.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile8.cpp: In function 'void test_read_l2v4_new_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile8.cpp:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("readSBML(\"l2v4-new.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp: In function 'void AttributeTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp: At global scope: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAttributeFunctions.cpp:1348:13: warning: 'test_Attributes_Trigger_Id' defined but not used [-Wunused-variable] 1348 | START_TEST (test_Attributes_Trigger_Id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestModelCreator_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLNode_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLOutputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:47: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp: In function 'void GraphicalObjectTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:66:10: warning: too many arguments for format [-Wformat-extra-args] 66 | fail("new (std::nothrow) GraphicalObject returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp: In function 'void QualitativeSpeciesTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Failed to create a QualitativeSpecies object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestFormulaTokenizer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestFormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function 'void ModelDefinitionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("ModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function 'void test_comp_modelDefinition_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:103:10: warning: too many arguments for format [-Wformat-extra-args] 103 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:112:10: warning: too many arguments for format [-Wformat-extra-args] 112 | fail("Model_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function 'void test_comp_modelDefinition_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:142:10: warning: too many arguments for format [-Wformat-extra-args] 142 | fail("Model_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestModelHistory.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp: In function 'void GroupTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Group(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp: In function 'void LayoutTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("new(std::nothrow) Layout() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile9.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile9.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile9.cpp: In function 'void test_read_l3v1_new_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile9.cpp:82:10: warning: too many arguments for format [-Wformat-extra-args] 82 | fail("readSBML(\"l3v1-new-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLToken.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp: In function 'void ImageTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Image(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestL3FormulaFormatter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp: In function 'void test_read_l2v5_all_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:106:10: warning: too many arguments for format [-Wformat-extra-args] 106 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp: In function 'void test_echo_l2v5_all_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:585:10: warning: too many arguments for format [-Wformat-extra-args] 585 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestFormulaParser.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestModelHistory_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUtilsUnit.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp: In function 'void test_read_l3v2_all_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:97:10: warning: too many arguments for format [-Wformat-extra-args] 97 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp: In function 'void test_echo_l3v2_all_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:580:10: warning: too many arguments for format [-Wformat-extra-args] 580 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLTriple.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c: In function 'void PortTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("Port_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c: In function 'void test_comp_port_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Port_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("Port_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c: In function 'void test_comp_port_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("Port_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:149:10: warning: too many arguments for format [-Wformat-extra-args] 149 | fail("Port_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function 'void test_read_l3v2_no_model_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:82:10: warning: too many arguments for format [-Wformat-extra-args] 82 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function 'void test_echo_l3v2_no_model_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:119:10: warning: too many arguments for format [-Wformat-extra-args] 119 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp: In function 'void TransitionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Failed to create a Transition object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test/TestXMLToken_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestL3FormulaParserC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestASTNode.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestASTNode.c:50: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestASTNode.c: In function 'void test_ASTNode_setName_1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestASTNode.c:1508:10: warning: too many arguments for format [-Wformat-extra-args] 1508 | fail("ASTNode_setName(...) did not make a copy of name."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test/TestASTNode.c:1516:10: warning: too many arguments for format [-Wformat-extra-args] 1516 | fail("ASTNode_setName(node, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp: In function 'void LineSegmentTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:59:10: warning: too many arguments for format [-Wformat-extra-args] 59 | fail("LineSegment_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp: In function 'void LinearGradientTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:53: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp: In function 'void LineEndingTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LineEnding(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function 'void test_read_l3v2_empty_lo_1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function 'void test_echo_l3v2_empty_lo_1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:204:10: warning: too many arguments for format [-Wformat-extra-args] 204 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function 'void test_echo_l3v2_empty_lo_3_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:325:10: warning: too many arguments for format [-Wformat-extra-args] 325 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function 'void test_read_l3v2_empty_lo_2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function 'void test_echo_l3v2_empty_lo_2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:240:10: warning: too many arguments for format [-Wformat-extra-args] 240 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function 'void ReplacedByTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("ReplacedBy_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function 'void test_comp_replacedBy_submodelRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:106:10: warning: too many arguments for format [-Wformat-extra-args] 106 | fail("ReplacedBy_setSubmodelRef(...) submodelRef not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:116:10: warning: too many arguments for format [-Wformat-extra-args] 116 | fail("ReplacedBy_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:40: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function 'void PointTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:57:10: warning: too many arguments for format [-Wformat-extra-args] 57 | fail("new(std::nothrow) Point() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function 'void test_Point_createWithCoordinates_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("new(std::nothrow) Point(1.2,0.4,3.1415) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp: In function 'void RadialGradientTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RadialGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp: In function 'void PolygonTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Polygon(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:57: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp: In function 'void LocalStyleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function 'void ReplacedElementTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("ReplacedElement_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function 'void test_comp_replacedElement_submodelRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:110:10: warning: too many arguments for format [-Wformat-extra-args] 110 | fail("ReplacedElement_setSubmodelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:120:10: warning: too many arguments for format [-Wformat-extra-args] 120 | fail("ReplacedElement_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function 'void test_comp_replacedElement_deletion_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:141:10: warning: too many arguments for format [-Wformat-extra-args] 141 | fail("ReplacedElement_setDeletion(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("ReplacedElement_unsetDeletion(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function 'void test_comp_replacedElement_conversionFactor_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:172:10: warning: too many arguments for format [-Wformat-extra-args] 172 | fail("ReplacedElement_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:182:10: warning: too many arguments for format [-Wformat-extra-args] 182 | fail("ReplacedElement_unsetConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function 'void test_read_l3v2_empty_math_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function 'void test_echo_l3v2_empty_math_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:175:10: warning: too many arguments for format [-Wformat-extra-args] 175 | fail("readSBML(\"l3v2-empty-math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:56: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp: In function 'void LocalRenderInformationTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)LocalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function 'void SBaseRefTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("SBaseRef_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function 'void test_comp_sBaseRef_idRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:114:10: warning: too many arguments for format [-Wformat-extra-args] 114 | fail("SBaseRef_setIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:124:10: warning: too many arguments for format [-Wformat-extra-args] 124 | fail("SBaseRef_unsetIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function 'void test_comp_sBaseRef_unitRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("SBaseRef_setUnitRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:155:10: warning: too many arguments for format [-Wformat-extra-args] 155 | fail("SBaseRef_unsetUnitRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function 'void test_comp_sBaseRef_metaIdRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("SBaseRef_setMetaIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:186:10: warning: too many arguments for format [-Wformat-extra-args] 186 | fail("SBaseRef_unsetMetaIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function 'void test_comp_sBaseRef_portRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:207:10: warning: too many arguments for format [-Wformat-extra-args] 207 | fail("SBaseRef_setPortRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:217:10: warning: too many arguments for format [-Wformat-extra-args] 217 | fail("SBaseRef_unsetPortRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function 'void test_comp_sBaseRef_sBaseRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:237:10: warning: too many arguments for format [-Wformat-extra-args] 237 | fail("SBaseRef_setSBaseRef(...) did not make a copy of the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:246:10: warning: too many arguments for format [-Wformat-extra-args] 246 | fail("SBaseRef_unsetSBaseRef(P) did not clear the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function 'void test_read_l3v2_empty_event_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function 'void test_echo_l3v2_empty_event_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:47: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp: In function 'void ReactionGlyphTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("new(std::nothrow) ReactionGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp: In function 'void ReferenceGlyphTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("new(std::nothrow) ReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp: In function 'void RectangleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:39: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function 'void SubmodelTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Submodel_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function 'void test_comp_submodel_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:120:10: warning: too many arguments for format [-Wformat-extra-args] 120 | fail("Submodel_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("Submodel_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function 'void test_comp_submodel_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("Submodel_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("Submodel_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function 'void test_comp_submodel_modelRef_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:182:10: warning: too many arguments for format [-Wformat-extra-args] 182 | fail("Submodel_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:192:10: warning: too many arguments for format [-Wformat-extra-args] 192 | fail("Submodel_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function 'void test_comp_submodel_timeConversionFactor_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:230:10: warning: too many arguments for format [-Wformat-extra-args] 230 | fail("Submodel_setTimeConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:240:10: warning: too many arguments for format [-Wformat-extra-args] 240 | fail("Submodel_unsetTimeConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function 'void test_comp_submodel_extentConversionFactor_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:261:10: warning: too many arguments for format [-Wformat-extra-args] 261 | fail("Submodel_setExtentConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:271:10: warning: too many arguments for format [-Wformat-extra-args] 271 | fail("Submodel_unsetExtentConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function 'void test_comp_submodel_deletion_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:294:10: warning: too many arguments for format [-Wformat-extra-args] 294 | fail("Submodel_addDeletion(...) did not make a copy of the deletion."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function 'void test_read_l3v2_empty_event2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function 'void test_echo_l3v2_empty_event2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp: In function 'void SpeciesGlyphTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:61:10: warning: too many arguments for format [-Wformat-extra-args] 61 | fail("new(std::nothrow) SpeciesGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp: In function 'void SpeciesReferenceGlyphTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("new(std::nothrow) SpeciesReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:37: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp: In function 'void TextGlyphTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:52:10: warning: too many arguments for format [-Wformat-extra-args] 52 | fail("new(std::nothrow) TextGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRemoveFromParent.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRemoveFromParent.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRemoveFromParent.cpp: In function 'void test_RemoveFromParent_successfulRemoves_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRemoveFromParent.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRemoveFromParent.cpp: In function 'void test_RemoveFromParent_alreadyRemoved_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRemoveFromParent.cpp:333:10: warning: too many arguments for format [-Wformat-extra-args] 333 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:53: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp: In function 'void RelAbsVectorTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RelAbsVector() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRenameIDs.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRenameIDs.cpp:43: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRenameIDs.cpp: In function 'void test_RenameIDs_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRenameIDs.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:55: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp: In function 'void RenderCubicBezierTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)RenderCubicBezier(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRequiredAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:52: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp: In function 'void RenderCurveTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RenderCurve(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRequiredElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLConvertFromL3V2.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator 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CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:55: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp: In function 'void RenderInformationBaseTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLConvertStrict.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp: In function 'void RenderPointTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RenderPoint(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 0%] Swig Python source cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.18.0-Source --master /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.18.0-Source/src > /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/class-list.txt cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../../../docs/src/common-graphics Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python" -DVERSION="5.18.0" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/add_version.cmake cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python" -DPYTHON_USE_API2_WARNINGS="OFF" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/patch-python.cmake -- Patching Python wrapper /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py:121: DeprecationWarning: the formatter module is deprecated from formatter import NullWriter, AbstractFormatter /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' Python: Add Version to generated file make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/depend.internal". Scanning dependencies of target binding_python_lib make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLParentObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function 'void test_SBMLTransforms_replaceFD_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("readSBML(\"multiple-functions.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function 'void test_SBMLTransforms_replaceIA_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:586:10: warning: too many arguments for format [-Wformat-extra-args] 586 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function 'void test_SBMLTransforms_replaceIA_species_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:740:10: warning: too many arguments for format [-Wformat-extra-args] 740 | fail("readSBML(\"initialAssignments_species.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function 'void test_SBMLTransforms_replaceIAWithFD_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:805:10: warning: too many arguments for format [-Wformat-extra-args] 805 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp: At global scope: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLTransforms.cpp:791:12: warning: 'test_SBMLTransforms_replaceIAWithFD' defined but not used [-Wunused-variable] 791 | START_TEST(test_SBMLTransforms_replaceIAWithFD) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLValidators.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp: In function 'void StyleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:50: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void SBaseIdNameTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:85:10: warning: too many arguments for format [-Wformat-extra-args] 85 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:92:10: warning: too many arguments for format [-Wformat-extra-args] 92 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:99:10: warning: too many arguments for format [-Wformat-extra-args] 99 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:106:10: warning: too many arguments for format [-Wformat-extra-args] 106 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:120:10: warning: too many arguments for format [-Wformat-extra-args] 120 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:127:10: warning: too many arguments for format [-Wformat-extra-args] 127 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:134:10: warning: too many arguments for format [-Wformat-extra-args] 134 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:141:10: warning: too many arguments for format [-Wformat-extra-args] 141 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void test_SBase_setName_1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:239:10: warning: too many arguments for format [-Wformat-extra-args] 239 | fail("SBase_setName(S31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void test_SBase_setName_2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:303:10: warning: too many arguments for format [-Wformat-extra-args] 303 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:315:10: warning: too many arguments for format [-Wformat-extra-args] 315 | fail("SBase_setName(S32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void test_SBase_setName_3_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:379:10: warning: too many arguments for format [-Wformat-extra-args] 379 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:391:10: warning: too many arguments for format [-Wformat-extra-args] 391 | fail("SBase_setName(E31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void test_SBase_setName_4_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:455:10: warning: too many arguments for format [-Wformat-extra-args] 455 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:467:10: warning: too many arguments for format [-Wformat-extra-args] 467 | fail("SBase_setName(E32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void test_SBase_setName_6_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:590:10: warning: too many arguments for format [-Wformat-extra-args] 590 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:602:10: warning: too many arguments for format [-Wformat-extra-args] 602 | fail("SBase_setName(U32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void test_SBase_setName_8_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:768:10: warning: too many arguments for format [-Wformat-extra-args] 768 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:780:10: warning: too many arguments for format [-Wformat-extra-args] 780 | fail("SBase_setName(AR32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function 'void test_SBase_setName_10_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:973:10: warning: too many arguments for format [-Wformat-extra-args] 973 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBaseIdName.cpp:985:10: warning: too many arguments for format [-Wformat-extra-args] 985 | fail("SBase_setName(EA32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:49: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp: In function 'void SBaseTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp: In function 'void test_SBase_setMetaId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:100:10: warning: too many arguments for format [-Wformat-extra-args] 100 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:112:10: warning: too many arguments for format [-Wformat-extra-args] 112 | fail("SBase_setMetaId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp: In function 'void test_SBase_setNotes_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:131:10: warning: too many arguments for format [-Wformat-extra-args] 131 | fail("SBase_setNotes(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("SBase_setNotes(c, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp: In function 'void test_SBase_setAnnotation_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:217:10: warning: too many arguments for format [-Wformat-extra-args] 217 | fail("SBase_setAnnotation(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:229:10: warning: too many arguments for format [-Wformat-extra-args] 229 | fail("SBase_setAnnotation(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp: In function 'void test_SBase_setNotesString_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:437:10: warning: too many arguments for format [-Wformat-extra-args] 437 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:462:10: warning: too many arguments for format [-Wformat-extra-args] 462 | fail("SBase_getNotesString(c, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:472:10: warning: too many arguments for format [-Wformat-extra-args] 472 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp: In function 'void test_SBase_setNotesString_l3_addMarkup_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:513:10: warning: too many arguments for format [-Wformat-extra-args] 513 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:533:10: warning: too many arguments for format [-Wformat-extra-args] 533 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp: In function 'void test_SBase_setAnnotationString_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:562:10: warning: too many arguments for format [-Wformat-extra-args] 562 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:586:10: warning: too many arguments for format [-Wformat-extra-args] 586 | fail("SBase_getAnnotationString(S, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase.cpp:596:10: warning: too many arguments for format [-Wformat-extra-args] 596 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase_newSetters.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase_newSetters.cpp:47: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase_newSetters.cpp: In function 'void SBaseTest_setup1()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBase_newSetters.cpp:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestWriteL3SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestWriteSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAlgebraicRule.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAlgebraicRule.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAlgebraicRule.c: In function 'void AlgebraicRuleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAlgebraicRule.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("AlgebraicRule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c:47: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c: In function 'void AssignmentRuleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("AssignmentRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c: In function 'void test_AssignmentRule_setVariable_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("AssignmentRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("AssignmentRule_setVariable(AR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c: In function 'void test_AssignmentRule_unsetVariable_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestAssignmentRule.c:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("AssignmentRule_unsetVariable(AR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c: In function 'void CompartmentTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c: In function 'void test_Compartment_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("Compartment_setId(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c: In function 'void test_Compartment_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:221:10: warning: too many arguments for format [-Wformat-extra-args] 221 | fail("Compartment_setName(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c: In function 'void test_Compartment_setUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:239:10: warning: too many arguments for format [-Wformat-extra-args] 239 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:251:10: warning: too many arguments for format [-Wformat-extra-args] 251 | fail("Compartment_setUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c: In function 'void test_Compartment_setOutside_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:269:10: warning: too many arguments for format [-Wformat-extra-args] 269 | fail("Compartment_setOutside(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment.c:281:10: warning: too many arguments for format [-Wformat-extra-args] 281 | fail("Compartment_setOutside(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c: In function 'void CompartmentTypeTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c: In function 'void test_CompartmentType_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("CompartmentType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("CompartmentType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c: In function 'void test_CompartmentType_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c:163:10: warning: too many arguments for format [-Wformat-extra-args] 163 | fail("CompartmentType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType.c:175:10: warning: too many arguments for format [-Wformat-extra-args] 175 | fail("CompartmentType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType_newSetters.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType_newSetters.c: In function 'void CompartmentTypeTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentType_newSetters.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c: In function 'void CompartmentVolumeRuleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c: In function 'void test_CompartmentVolumeRule_setCompartment_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:144:11: warning: too many arguments for format [-Wformat-extra-args] 144 | fail( "Rule_setVariable(...)" | ^~~~~~~~~~~~~~~~~~~~~~~ 145 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:159:11: warning: too many arguments for format [-Wformat-extra-args] 159 | fail( "Rule_setVariable(CVR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment_newSetters.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment_newSetters.c: In function 'void CompartmentTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestCompartment_newSetters.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c: In function 'void ConstraintTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c: In function 'void test_Constraint_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("Constraint_setMath(C, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c: In function 'void test_Constraint_setMessage_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint.c:182:10: warning: too many arguments for format [-Wformat-extra-args] 182 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c: In function 'void ConstraintTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c: In function 'void test_Constraint_setMessage1_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c:132:10: warning: too many arguments for format [-Wformat-extra-args] 132 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c: In function 'void test_Constraint_setMessage2_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestConstraint_newSetters.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestDelay.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestDelay.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestDelay.c: In function 'void DelayTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestDelay.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("Delay_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestDelay.c: In function 'void test_Delay_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestDelay.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("Delay_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c: In function 'void EventTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c: In function 'void test_Event_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:149:10: warning: too many arguments for format [-Wformat-extra-args] 149 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("Event_setId(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c: In function 'void test_Event_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("Event_setName(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c: In function 'void test_Event_setTrigger_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:211:10: warning: too many arguments for format [-Wformat-extra-args] 211 | fail("Event_setTrigger(...) did not make a copy of trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:223:10: warning: too many arguments for format [-Wformat-extra-args] 223 | fail("Event_setTrigger(E, NULL) did not clear trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c: In function 'void test_Event_setDelay_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:245:10: warning: too many arguments for format [-Wformat-extra-args] 245 | fail("Event_setDelay(...) did not make a copy of Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:257:10: warning: too many arguments for format [-Wformat-extra-args] 257 | fail("Event_setDelay(E, NULL) did not clear Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c: In function 'void test_Event_setTimeUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:278:10: warning: too many arguments for format [-Wformat-extra-args] 278 | fail("Event_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent.c:290:10: warning: too many arguments for format [-Wformat-extra-args] 290 | fail("Event_setTimeUnits(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c: In function 'void EventAssignmentTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c: In function 'void test_EventAssignment_setVariable_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("EventAssignment_setVariable(EA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c: In function 'void test_EventAssignment_unsetVariable_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c:163:10: warning: too many arguments for format [-Wformat-extra-args] 163 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c:171:10: warning: too many arguments for format [-Wformat-extra-args] 171 | fail("EventAssignment_unsetVariable(EA) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c: In function 'void test_EventAssignment_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment.c:213:10: warning: too many arguments for format [-Wformat-extra-args] 213 | fail("EventAssignment_setMath(EA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment_newSetters.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment_newSetters.c: In function 'void EventAssignmentTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEventAssignment_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp: In function 'void TextTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent_newSetters.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent_newSetters.c: In function 'void EventTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestEvent_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c: In function 'void FunctionDefinitionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c: In function 'void test_FunctionDefinition_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c:202:10: warning: too many arguments for format [-Wformat-extra-args] 202 | fail("FunctionDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c:214:10: warning: too many arguments for format [-Wformat-extra-args] 214 | fail("FunctionDefinition_setId(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c: In function 'void test_FunctionDefinition_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("FunctionDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c:244:10: warning: too many arguments for format [-Wformat-extra-args] 244 | fail("FunctionDefinition_setName(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c: In function 'void test_FunctionDefinition_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition.c:286:10: warning: too many arguments for format [-Wformat-extra-args] 286 | fail("FunctionDefinition_setMath(FD, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_csharp_native_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp/../swig -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_csharp_native_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c: In function 'void FunctionDefinitionTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c: In function 'void InitialAssignmentTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c: In function 'void test_InitialAssignment_setSymbol_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c:142:10: warning: too many arguments for format [-Wformat-extra-args] 142 | fail("InitialAssignment_setSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c: In function 'void test_InitialAssignment_unsetSymbol_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("InitialAssignment_unsetSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c: In function 'void test_InitialAssignment_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("InitialAssignment_setMath(IA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c: In function 'void InitialAssignmentTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c: In function 'void KineticLawTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c: In function 'void test_KineticLaw_setFormula_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c:192:10: warning: too many arguments for format [-Wformat-extra-args] 192 | fail("KineticLaw_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c:204:10: warning: too many arguments for format [-Wformat-extra-args] 204 | fail("KineticLaw_setFormula(kl, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c: In function 'void test_KineticLaw_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw.c:283:11: warning: too many arguments for format [-Wformat-extra-args] 283 | fail( "KineticLaw_setMath(kl, NULL) did not clear ASTNode." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp:51: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp: In function 'void TransformationTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp:69:14: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw_newSetters.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw_newSetters.c: In function 'void KineticLawTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestKineticLaw_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c: In function 'void L3CompartmentTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("Compartment_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c: In function 'void test_L3_Compartment_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c: In function 'void test_L3_Compartment_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Compartment_unsetName(C) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c: In function 'void test_L3_Compartment_units_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Compartment.c:183:10: warning: too many arguments for format [-Wformat-extra-args] 183 | fail("Compartment_unsetUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:54: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp: In function 'void Transformation2DTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c: In function 'void L3EventTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("Event_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c: In function 'void test_L3_Event_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c:127:10: warning: too many arguments for format [-Wformat-extra-args] 127 | fail("Event_unsetId(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c: In function 'void test_L3_Event_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Event.c:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("Event_unsetName(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3KineticLaw.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3KineticLaw.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3KineticLaw.c: In function 'void L3KineticLawTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3KineticLaw.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("KineticLaw_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c: In function 'void L3LocalParameterTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("LocalParameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c: In function 'void test_L3_LocalParameter_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("LocalParameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c: In function 'void test_L3_LocalParameter_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("LocalParameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("LocalParameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c: In function 'void test_L3_LocalParameter_units_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("LocalParameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3LocalParameter.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("LocalParameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void L3ModelTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Model_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:126:10: warning: too many arguments for format [-Wformat-extra-args] 126 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:135:10: warning: too many arguments for format [-Wformat-extra-args] 135 | fail("Model_unsetId(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:155:10: warning: too many arguments for format [-Wformat-extra-args] 155 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("Model_unsetName(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_substanceUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Model_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:193:10: warning: too many arguments for format [-Wformat-extra-args] 193 | fail("Model_unsetSubstanceUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_timeUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:213:10: warning: too many arguments for format [-Wformat-extra-args] 213 | fail("Model_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("Model_unsetTimeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_volumeUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:242:10: warning: too many arguments for format [-Wformat-extra-args] 242 | fail("Model_setVolumeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:251:10: warning: too many arguments for format [-Wformat-extra-args] 251 | fail("Model_unsetVolumeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_areaUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:271:10: warning: too many arguments for format [-Wformat-extra-args] 271 | fail("Model_setAreaUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:280:10: warning: too many arguments for format [-Wformat-extra-args] 280 | fail("Model_unsetAreaUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_lengthUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:300:10: warning: too many arguments for format [-Wformat-extra-args] 300 | fail("Model_setLengthUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:309:10: warning: too many arguments for format [-Wformat-extra-args] 309 | fail("Model_unsetLengthUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_extentUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:329:10: warning: too many arguments for format [-Wformat-extra-args] 329 | fail("Model_setExtentUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:338:10: warning: too many arguments for format [-Wformat-extra-args] 338 | fail("Model_unsetExtentUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c: In function 'void test_L3_Model_conversionFactor_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:358:10: warning: too many arguments for format [-Wformat-extra-args] 358 | fail("Model_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Model.c:367:10: warning: too many arguments for format [-Wformat-extra-args] 367 | fail("Model_unsetConversionFactor(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c: In function 'void L3ParameterTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Parameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c: In function 'void test_L3_Parameter_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c:120:10: warning: too many arguments for format [-Wformat-extra-args] 120 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c: In function 'void test_L3_Parameter_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c:140:10: warning: too many arguments for format [-Wformat-extra-args] 140 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c:149:10: warning: too many arguments for format [-Wformat-extra-args] 149 | fail("Parameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c: In function 'void test_L3_Parameter_units_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Parameter.c:178:10: warning: too many arguments for format [-Wformat-extra-args] 178 | fail("Parameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c: In function 'void L3ReactionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:66:10: warning: too many arguments for format [-Wformat-extra-args] 66 | fail("Reaction_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Reaction_create(3, 2) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c: In function 'void test_L3_Reaction_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:128:10: warning: too many arguments for format [-Wformat-extra-args] 128 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c: In function 'void test_L3_Reaction_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:157:10: warning: too many arguments for format [-Wformat-extra-args] 157 | fail("Reaction_unsetName(R) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c: In function 'void test_L3_Reaction_compartment_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:177:10: warning: too many arguments for format [-Wformat-extra-args] 177 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Reaction.c:186:10: warning: too many arguments for format [-Wformat-extra-args] 186 | fail("Reaction_unsetCompartment(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function 'void L3SpeciesReferenceTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c:62:10: warning: too many arguments for format [-Wformat-extra-args] 62 | fail("SpeciesReference_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function 'void test_L3_SpeciesReference_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function 'void test_L3_SpeciesReference_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c:137:10: warning: too many arguments for format [-Wformat-extra-args] 137 | fail("SpeciesReference_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("SpeciesReference_unsetName(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function 'void test_L3_SpeciesReference_species_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3SpeciesReference.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c: In function 'void L3SpeciesTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Species_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c: In function 'void test_L3_Species_id_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c: In function 'void test_L3_Species_name_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("Species_unsetName(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c: In function 'void test_L3_Species_compartment_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:182:10: warning: too many arguments for format [-Wformat-extra-args] 182 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c: In function 'void test_L3_Species_substanceUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:247:10: warning: too many arguments for format [-Wformat-extra-args] 247 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:256:10: warning: too many arguments for format [-Wformat-extra-args] 256 | fail("Species_unsetSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c: In function 'void test_L3_Species_conversionFactor_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:363:10: warning: too many arguments for format [-Wformat-extra-args] 363 | fail("Species_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Species.c:372:10: warning: too many arguments for format [-Wformat-extra-args] 372 | fail("Species_unsetConversionFactor(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Trigger.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Trigger.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Trigger.c: In function 'void L3TriggerTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Trigger.c:66:10: warning: too many arguments for format [-Wformat-extra-args] 66 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Unit.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Unit.c:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Unit.c: In function 'void L3UnitTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestL3Unit.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Unit_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestListOf.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c: In function 'void ModelTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c: In function 'void test_Model_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c:149:10: warning: too many arguments for format [-Wformat-extra-args] 149 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("Model_setId(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c: In function 'void test_Model_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel.c:196:10: warning: too many arguments for format [-Wformat-extra-args] 196 | fail("Model_setName(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel_newSetters.c:60: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel_newSetters.c: In function 'void ModelTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModel_newSetters.c:82:10: warning: too many arguments for format [-Wformat-extra-args] 82 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c: In function 'void ModifierSpeciesReferenceTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c:67:11: warning: too many arguments for format [-Wformat-extra-args] 67 | fail( "ModifierSpeciesReference_create() returned a NULL pointer." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c: In function 'void test_ModifierSpeciesReference_setSpecies_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c:119:11: warning: too many arguments for format [-Wformat-extra-args] 119 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c:135:11: warning: too many arguments for format [-Wformat-extra-args] 135 | fail( "ModifierModifierSpeciesReference_setSpecies(MSR, NULL) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c: In function 'void test_ModifierSpeciesReference_unsetSpecies_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c:157:11: warning: too many arguments for format [-Wformat-extra-args] 157 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestModifierSpeciesReference.c:166:11: warning: too many arguments for format [-Wformat-extra-args] 166 | fail( "ModifierModifierSpeciesReference_unsetSpecies(MSR) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c: In function 'void ParameterTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c: In function 'void test_Parameter_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:155:10: warning: too many arguments for format [-Wformat-extra-args] 155 | fail("Parameter_setId(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c: In function 'void test_Parameter_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:173:10: warning: too many arguments for format [-Wformat-extra-args] 173 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:185:10: warning: too many arguments for format [-Wformat-extra-args] 185 | fail("Parameter_setName(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c: In function 'void test_Parameter_setUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:203:10: warning: too many arguments for format [-Wformat-extra-args] 203 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter.c:215:10: warning: too many arguments for format [-Wformat-extra-args] 215 | fail("Parameter_setUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c: In function 'void ParameterRuleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c: In function 'void test_ParameterRule_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c:148:11: warning: too many arguments for format [-Wformat-extra-args] 148 | fail( "ParameterRule_setName(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c:163:11: warning: too many arguments for format [-Wformat-extra-args] 163 | fail( "Rule_setVariable(PR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c: In function 'void test_ParameterRule_setUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c:182:11: warning: too many arguments for format [-Wformat-extra-args] 182 | fail( "Rule_setUnits(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameterRule.c:194:11: warning: too many arguments for format [-Wformat-extra-args] 194 | fail( "Rule_setUnits(PR, NULL) did not clear string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter_newSetters.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter_newSetters.c: In function 'void ParameterTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestParameter_newSetters.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestPriority.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestPriority.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestPriority.c: In function 'void PriorityTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestPriority.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Priority_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestPriority.c: In function 'void test_Priority_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestPriority.c:128:10: warning: too many arguments for format [-Wformat-extra-args] 128 | fail("Priority_setMath(P, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c: In function 'void RateRuleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("RateRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c: In function 'void test_RateRule_setVariable_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c:112:10: warning: too many arguments for format [-Wformat-extra-args] 112 | fail("RateRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c:124:10: warning: too many arguments for format [-Wformat-extra-args] 124 | fail("RateRule_setVariable(RR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c: In function 'void test_RateRule_unsetVariable_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRateRule.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("RateRule_unsetVariable(RR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c: In function 'void ReactionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c: In function 'void test_Reaction_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:165:10: warning: too many arguments for format [-Wformat-extra-args] 165 | fail("Reaction_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c: In function 'void test_Reaction_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:183:10: warning: too many arguments for format [-Wformat-extra-args] 183 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:195:10: warning: too many arguments for format [-Wformat-extra-args] 195 | fail("Reaction_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c: In function 'void test_Reaction_compartment_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:270:10: warning: too many arguments for format [-Wformat-extra-args] 270 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction.c:282:10: warning: too many arguments for format [-Wformat-extra-args] 282 | fail("Reaction_unsetCompartment(r) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction_newSetters.c:47: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction_newSetters.c: In function 'void ReactionTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReaction_newSetters.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 74%] Building CXX object src/bindings/java/CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_java_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java/../swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -I/usr/lib/jvm/java/include -I/usr/lib/jvm/java/include/linux -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile1.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile1.c:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile1.c: In function 'void test_read_l1v1_branch_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile1.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("readSBML(\"l1v1-branch.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile3.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile3.c:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile3.c: In function 'void test_read_l1v1_rules_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile3.c:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("readSBML(\"l1v1-rules.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile2.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile2.c:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile2.c: In function 'void test_read_l1v1_units_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile2.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("readSBML(\"l1v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile4.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile4.c:41: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile4.c: In function 'void test_read_l1v1_minimal_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestReadFromFile4.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("readSBML(\"l1v1-minimal.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c: In function 'void RuleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c:66:10: warning: too many arguments for format [-Wformat-extra-args] 66 | fail("Rule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c: In function 'void test_Rule_setFormula_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c:103:10: warning: too many arguments for format [-Wformat-extra-args] 103 | fail("Rule_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c:115:10: warning: too many arguments for format [-Wformat-extra-args] 115 | fail("Rule_setFormula(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c: In function 'void test_Rule_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule.c:140:10: warning: too many arguments for format [-Wformat-extra-args] 140 | fail("Rule_setMath(R, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule_newSetters.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule_newSetters.c: In function 'void RuleTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRule_newSetters.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLConvert.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:42: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c: In function 'void SpeciesConcentrationRuleTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c: In function 'void test_SpeciesConcentrationRule_setSpecies_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:143:11: warning: too many arguments for format [-Wformat-extra-args] 143 | fail( "SpeciesConcentrationRule_setSpecies(...)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:158:11: warning: too many arguments for format [-Wformat-extra-args] 158 | fail( "SpeciesConcentrationRule_setSpecies(SCR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSBMLDocument.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void SpeciesTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void test_Species_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("Species_setId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void test_Species_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:192:10: warning: too many arguments for format [-Wformat-extra-args] 192 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:204:10: warning: too many arguments for format [-Wformat-extra-args] 204 | fail("Species_setName(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void test_Species_setCompartment_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:234:10: warning: too many arguments for format [-Wformat-extra-args] 234 | fail("Species_setComartment(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void test_Species_unsetCompartment_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:252:10: warning: too many arguments for format [-Wformat-extra-args] 252 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:260:10: warning: too many arguments for format [-Wformat-extra-args] 260 | fail("Species_unsetComartment(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void test_Species_setSubstanceUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:308:10: warning: too many arguments for format [-Wformat-extra-args] 308 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:320:10: warning: too many arguments for format [-Wformat-extra-args] 320 | fail("Species_setSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void test_Species_setSpatialSizeUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:340:10: warning: too many arguments for format [-Wformat-extra-args] 340 | fail("Species_setSpatialSizeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:352:10: warning: too many arguments for format [-Wformat-extra-args] 352 | fail("Species_setSpatialSizeUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c: In function 'void test_Species_setUnits_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:372:10: warning: too many arguments for format [-Wformat-extra-args] 372 | fail("Species_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies.c:384:10: warning: too many arguments for format [-Wformat-extra-args] 384 | fail("Species_setUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:48: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c: In function 'void SpeciesReferenceTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c: In function 'void test_SpeciesReference_setSpecies_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:157:10: warning: too many arguments for format [-Wformat-extra-args] 157 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("SpeciesReference_setSpecies(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c: In function 'void test_SpeciesReference_unsetSpecies_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:195:10: warning: too many arguments for format [-Wformat-extra-args] 195 | fail("SpeciesReference_unsetSpecies(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c: In function 'void test_SpeciesReference_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:213:10: warning: too many arguments for format [-Wformat-extra-args] 213 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference.c:225:10: warning: too many arguments for format [-Wformat-extra-args] 225 | fail("SpeciesReference_setId(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c:47: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c: In function 'void SpeciesReferenceTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c: In function 'void SpeciesTypeTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c: In function 'void test_SpeciesType_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c:134:10: warning: too many arguments for format [-Wformat-extra-args] 134 | fail("SpeciesType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("SpeciesType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c: In function 'void test_SpeciesType_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("SpeciesType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("SpeciesType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType_newSetters.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType_newSetters.c: In function 'void SpeciesTypeTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpeciesType_newSetters.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies_newSetters.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies_newSetters.c: In function 'void SpeciesTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSpecies_newSetters.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestStoichiometryMath.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestStoichiometryMath.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestStoichiometryMath.c: In function 'void StoichiometryMathTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestStoichiometryMath.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("StoichiometryMath_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestStoichiometryMath.c: In function 'void test_StoichiometryMath_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestStoichiometryMath.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("StoichiometryMath_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestSyntaxChecker.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestTrigger.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestTrigger.c:46: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestTrigger.c: In function 'void TriggerTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestTrigger.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestTrigger.c: In function 'void test_Trigger_setMath_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestTrigger.c:159:10: warning: too many arguments for format [-Wformat-extra-args] 159 | fail("Trigger_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit.c: In function 'void UnitTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c: In function 'void UnitDefinitionTest_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c: In function 'void test_UnitDefinition_setId_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c:159:10: warning: too many arguments for format [-Wformat-extra-args] 159 | fail("UnitDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c:171:10: warning: too many arguments for format [-Wformat-extra-args] 171 | fail("UnitDefinition_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c: In function 'void test_UnitDefinition_setName_fn(int)': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("UnitDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition.c:201:10: warning: too many arguments for format [-Wformat-extra-args] 201 | fail("UnitDefinition_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c:45: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c: In function 'void UnitDefinitionTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit_newSetters.c:44: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit_newSetters.c: In function 'void UnitTest1_setup()': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/TestUnit_newSetters.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -o test_fbc_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_fbc_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Linking CXX executable test_l3v2extendedmath_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_l3v2extendedmath_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -o test_l3v2extendedmath_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_l3v2extendedmath_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_multi_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/../swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -I/usr/include/R -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'int _p_f_p_q_const__ASTNode__int(const ASTNode_t*)': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp:107463:7: warning: unused variable 'ecode' [-Wunused-variable] 107463 | int ecode = 0; | ^~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'int _p_f_p_Model_p_SBMLErrorLog_p_void__int(Model*, SBMLErrorLog*, void*)': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp:131040:7: warning: unused variable 'ecode' [-Wunused-variable] 131040 | int ecode = 0; | ^~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'R_swig_Transformation_setMatrix': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp:247508:7: warning: 'arg2' may be used uninitialized in this function [-Wmaybe-uninitialized] 247508 | free(arg2); | ~~~~^~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'R_swig_Transformation2D_setMatrix2D': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp:248216:7: warning: 'arg2' may be used uninitialized in this function [-Wmaybe-uninitialized] 248216 | free(arg2); | ~~~~^~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function 'R_swig_Transformation2D_setMatrix': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libsbml_wrap.cpp:248260:7: warning: 'arg2' may be used uninitialized in this function [-Wmaybe-uninitialized] 248260 | free(arg2); | ~~~~^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 80%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: 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CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLError.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLLogOverride.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o -lbz2 -lz -lxml2 cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src && /usr/bin/cmake -E cmake_symlink_library libsbml.so.5.18.0 libsbml.so.5 libsbml.so make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target sbml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Linking CXX executable test_extension_package_l3v2extendedmath cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_l3v2extendedmath.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -o test_extension_package_l3v2extendedmath ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_extension_package_l3v2extendedmath make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:25: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_comp_extensions make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_comp_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 91%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:25: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_comp_sbase make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:1, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:1, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:45, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:1, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:54, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_conversion make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_package_multi make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_qual_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 87%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionNamespaces_getURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp:79:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp: In function 'SBMLExtensionNamespaces_getURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionNamespaces_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp:95:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp: In function 'SBMLExtensionNamespaces_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:25: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_extension make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_groups_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Linking CXX executable test_render_validator cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_render_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_render_validator.dir/TestFile.cpp.o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -o test_render_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_render_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_extension_package_groups make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_extension_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Linking CXX executable test_sbml_xml cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_xml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -o test_sbml_xml ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:54, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:45, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:1, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:7, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:1, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_xml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 85%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:34: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_package_fbc make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 88%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:25: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_comp_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 89%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1106:56, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1101:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getPortRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1117:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1112:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1128:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1123:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getUnitRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1139:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1134:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1453:2, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1448:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1464:2, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1459:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1475:2, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1470:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1494:2, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1489:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getTimeConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1505:2, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1500:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getExtentConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:645:1, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:637:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:662:10, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:654:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1037:54, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1030:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1053:54, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1046:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:54, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:54, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1610:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1603:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1626:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1619:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1415:45, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1410:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1426:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1421:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1448:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1443:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:783:28, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:778:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:794:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:789:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getSource': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:805:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:800:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:816:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2321:1, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2314:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2337:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2330:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1641:39, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1634:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1657:39, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1650:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1844:32, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1855:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1850:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1318:45, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1313:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1329:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1324:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1351:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1346:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1336:16, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1329:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1352:16, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1345:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:935:62, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:930:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:946:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:941:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:957:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:968:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:963:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:903:35, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:896:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:921:35, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:913:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:969:48, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:961:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:826:76, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:818:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In function 'MultiCompartmentPlugin_getCompartmentType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:822:24, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:817:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:833:24, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:828:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:844:24, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1131:12, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1124:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:412:72, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:403:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In function 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:401:11, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:396:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:412:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:407:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedBy_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:243:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp: In function 'ReplacedBy_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1410:66, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1405:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1421:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1416:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1440:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_units make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' .0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1435:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1725:1, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1720:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1736:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1731:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1749:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1744:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:922:46, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:933:46, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:967:56, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:962:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1547:67, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1540:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1563:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1556:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1581:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1573:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getSpeciesFeatureType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1609:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1601:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1080:9, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1075:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1091:9, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1086:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:667:22, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:662:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In function 'SpeciesFeatureValue_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:1, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1388:27, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1381:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1404:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1397:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:352:10, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:363:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:358:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1100:10, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1092:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In function 'MultiSpeciesPlugin_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:941:45, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:952:10, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:947:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:963:10, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:958:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:974:10, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getIdentifyingParent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1010:22, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1005:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1021:22, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1016:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1032:22, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactant': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1043:22, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1038:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactantComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1054:22, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1049:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getProductComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1034:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp: In function 'Transformation_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1490:22, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1483:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:1, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1596:50, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1589:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In function 'LineEnding_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:922:1, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:933:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:944:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:939:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite1': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:955:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:950:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite2': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:820:22, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:815:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:831:22, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:826:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:842:22, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:837:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getNumericValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:54, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:543:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:554:56, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:549:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getDeletion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:565:64, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:560:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Linking CXX executable test_sbml_annotation cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_annotation.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:33, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:1, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:41, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:52, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:54, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_annotation make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1037:54, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1030:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1053:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1046:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:401:11, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:396:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:412:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:407:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedBy_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:243:33: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp: In function 'ReplacedBy_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:543:12: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:554:56, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:549:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getDeletion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:565:64, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:560:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1388:27, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1381:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1404:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1397:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:645:15, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:637:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:662:15, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:654:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1318:24, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1313:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1329:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1324:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1351:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1346:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:922:1, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:933:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:944:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:939:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite1': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:955:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:950:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite2': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:820:22, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:815:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:831:22, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:826:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:842:22, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:837:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getNumericValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:412:72, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:403:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In function 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1106:56, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1101:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getPortRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1117:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1112:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1128:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1123:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getUnitRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1139:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1134:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1490:1, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1483:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:1, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1596:50, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1589:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In function 'LineEnding_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:41, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1010:1, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1005:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1021:10, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1016:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1032:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactant': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1043:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1038:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactantComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1054:10, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1049:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getProductComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:935:22, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:930:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:946:22, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:941:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:957:22, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:968:22, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:963:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:903:35, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:896:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:921:35, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:913:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:969:48, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:961:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:783:45, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:778:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:794:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:789:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getSource': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:805:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:800:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:816:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1034:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp: In function 'Transformation_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1336:16, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1329:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1352:10, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1345:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1131:45, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1124:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:667:45, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:662:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In function 'SpeciesFeatureValue_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:941:22, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:952:22, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:947:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:963:22, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:958:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:974:22, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getIdentifyingParent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1547:82, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1540:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1563:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1556:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1581:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1573:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getSpeciesFeatureType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1609:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1601:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1080:47, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1075:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1091:47, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1086:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1725:45, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1720:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1736:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1731:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1749:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1744:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:922:46, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:933:46, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:967:56, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:962:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:352:1, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:363:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:358:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1415:45, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1410:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1426:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1421:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1448:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1443:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1610:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1603:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1626:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1619:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:826:76, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:818:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In function 'MultiCompartmentPlugin_getCompartmentType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:822:24, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:817:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:833:24, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:828:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:844:24, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1100:74, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1092:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In function 'MultiSpeciesPlugin_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1410:66, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1405:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1421:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1416:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1440:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1435:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1844:32, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1855:32, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1850:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:25: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1453:1, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1448:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1464:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1459:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1475:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1470:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1494:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1489:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getTimeConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1505:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1500:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getExtentConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2321:51, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2314:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2337:53, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2330:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:16, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:16, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1641:49, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1634:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1657:51, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1650:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:54, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_package_layout make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 90%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:12: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1641:3, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1634:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1657:10, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1650:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2321:52, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2314:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2337:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2330:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1725:43, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1720:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1736:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1731:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1749:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1744:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:412:72, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:403:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In function 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1100:74, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1092:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In function 'MultiSpeciesPlugin_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1034:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp: In function 'Transformation_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1388:27, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1381:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1404:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1397:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:645:15, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:637:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:662:15, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:654:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1318:45, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1313:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1329:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1324:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1351:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1346:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1336:16, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1329:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1352:16, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1345:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:1, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:54, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcSpeciesPlugin_getChemicalFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:872:24, inlined from 'FbcSpeciesPlugin_getChemicalFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:866:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp: In function 'FbcSpeciesPlugin_getChemicalFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:783:1, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:778:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:794:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:789:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getSource': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:805:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:800:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:816:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1410:66, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1405:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1421:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1416:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1440:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1435:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1415:45, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1410:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1426:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1421:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1448:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1443:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1131:59, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1124:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1037:45, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1030:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1053:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1046:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1490:10, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1483:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:1, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1596:50, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1589:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In function 'LineEnding_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcReactionPlugin_getUpperFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1000:66, inlined from 'FbcReactionPlugin_getUpperFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:994:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In function 'FbcReactionPlugin_getUpperFluxBound': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcReactionPlugin_getLowerFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1043:18, inlined from 'FbcReactionPlugin_getLowerFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1037:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In function 'FbcReactionPlugin_getLowerFluxBound': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1844:32, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1855:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1850:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:826:76, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:818:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In function 'MultiCompartmentPlugin_getCompartmentType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:822:24, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:817:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:833:24, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:828:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:844:24, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1547:45, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1540:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1563:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1556:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1581:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1573:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getSpeciesFeatureType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1609:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1601:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1080:47, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1075:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1091:47, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1086:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:667:22, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:662:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In function 'SpeciesFeatureValue_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBasePluginCreator_getSupportedPackageURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:201:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp: In function 'SBasePluginCreator_getSupportedPackageURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBasePluginCreator_getSupportedPackageURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:201:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp: In function 'SBasePluginCreator_getSupportedPackageURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:401:1, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:396:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:412:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:407:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedBy_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:243:18: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp: In function 'ReplacedBy_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:543:18: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:554:56, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:549:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getDeletion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:565:64, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:560:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:352:1, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:363:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:358:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1106:56, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1101:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getPortRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1117:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1112:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1128:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1123:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getUnitRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1139:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1134:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:922:46, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:933:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:967:56, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:962:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:935:62, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:930:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:946:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:941:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:957:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:968:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:963:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:903:35, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:896:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:921:35, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:913:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:969:48, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:961:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1610:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1603:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1626:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1619:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1453:1, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1448:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1464:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1459:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1475:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1470:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1494:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1489:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getTimeConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1505:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1500:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getExtentConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:922:1, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:933:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:944:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:939:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite1': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:955:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:950:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite2': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:820:22, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:815:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:831:22, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:826:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:842:22, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:837:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getNumericValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:941:45, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:952:10, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:947:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:963:10, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:958:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:974:10, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getIdentifyingParent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1010:22, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1005:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1021:22, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1016:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1032:22, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactant': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1043:22, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1038:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactantComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1054:22, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1049:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getProductComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_math make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'getRegisteredPackageNames' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:448:31: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'getRegisteredPackageNames': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseExtensionPoint_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp:197:34: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp: In function 'SBaseExtensionPoint_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBasePluginCreator_getSupportedPackageURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:201:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp: In function 'SBasePluginCreator_getSupportedPackageURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBasePluginCreator_getSupportedPackageURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:201:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp: In function 'SBasePluginCreator_getSupportedPackageURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:543:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:554:56, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:549:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getDeletion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:565:64, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:560:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1106:56, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1101:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getPortRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1117:56, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1112:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1128:56, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1123:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getUnitRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1139:56, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1134:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:903:1, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:896:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:921:10, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:913:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:969:48, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:961:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1080:45, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1075:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1091:10, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1086:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:667:22, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:662:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In function 'SpeciesFeatureValue_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:941:22, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:952:22, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:947:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:963:22, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:958:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:974:22, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getIdentifyingParent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1610:50, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1603:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1626:52, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1619:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2321:51, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2314:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2337:53, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2330:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:16, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:16, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:412:72, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:403:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In function 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1100:74, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1092:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In function 'MultiSpeciesPlugin_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1034:51, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp: In function 'Transformation_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:41, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1725:43, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1720:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1736:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1731:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1749:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1744:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1388:21, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1381:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1404:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1397:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:645:33, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:637:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:662:33, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:654:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1037:33, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1030:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1053:33, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1046:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:33, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:33, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1844:66, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1855:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1850:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getSBOTermID' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:7556:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getSBOTermID': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getNotesString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:7598:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getNotesString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getSBOTermAsURL' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:7565:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getSBOTermAsURL': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FluxBound_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1240:42, inlined from 'FluxBound_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1235:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In function 'FluxBound_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FluxBound_getReaction' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1310:12, inlined from 'FluxBound_getReaction' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1305:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In function 'FluxBound_getReaction': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:922:1, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:933:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:944:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:939:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite1': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:955:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:950:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite2': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:820:22, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:815:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:831:22, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:826:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:842:22, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:837:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getNumericValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1010:22, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1005:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1021:10, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1016:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1032:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactant': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1043:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1038:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactantComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1054:10, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1049:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getProductComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:935:22, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:930:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:946:22, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:941:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:957:22, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:968:22, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:963:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:783:57, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:778:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:794:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:789:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getSource': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:805:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:800:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:816:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1131:49, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1124:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1596:50, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1589:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In function 'LineEnding_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1336:50, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1329:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1352:52, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1345:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1641:49, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1634:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1657:51, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1650:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:401:11, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:396:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:412:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:407:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstrmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_package_render make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Linking CXX shared library libsbmlcs.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_csharp_native_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libsbmlcs.so -o libsbmlcs.so CMakeFiles/binding_csharp_native_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' ingop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedBy_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:243:33: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp: In function 'ReplacedBy_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:16, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1318:45, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1313:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1329:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1324:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1351:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1346:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:826:76, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:818:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In function 'MultiCompartmentPlugin_getCompartmentType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:822:24, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:817:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:833:24, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:828:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:844:24, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1415:45, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1410:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1426:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1421:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1448:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1443:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:922:46, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:933:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:967:56, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:962:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1547:82, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1540:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1563:82, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1556:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1581:82, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1573:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getSpeciesFeatureType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1609:23, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1601:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1453:36, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1448:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1464:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1459:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1475:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1470:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1494:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1489:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getTimeConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1505:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1500:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getExtentConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1410:1, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1405:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1421:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1416:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1440:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1435:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:352:1, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:363:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:358:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcReactionPlugin_getUpperFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1000:66, inlined from 'FbcReactionPlugin_getUpperFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:994:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In function 'FbcReactionPlugin_getUpperFluxBound': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcReactionPlugin_getLowerFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1043:18, inlined from 'FbcReactionPlugin_getLowerFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1037:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In function 'FbcReactionPlugin_getLowerFluxBound': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcSpeciesPlugin_getChemicalFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:872:24, inlined from 'FbcSpeciesPlugin_getChemicalFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:866:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp: In function 'FbcSpeciesPlugin_getChemicalFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1490:51, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1483:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:53, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target binding_csharp_native_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Linking CXX executable test_sbml_sbml cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_sbml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o 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CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -o test_sbml_sbml ../../libsbml-static.a -lcheck -lbz2 -lz -lxml2 In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1131:59, inlined from 'Image_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1124:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1147:51, inlined from 'Image_getHref' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp:1140:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Image.cpp: In function 'Image_getHref': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1375:54, inlined from 'RenderCurve_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1367:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1392:16, inlined from 'RenderCurve_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:1384:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In function 'RenderCurve_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1697:16, inlined from 'Text_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp:1689:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Text.cpp: In function 'Text_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1034:10, inlined from 'Transformation_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Transformation.cpp: In function 'Transformation_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2943:16, inlined from 'RenderGroup_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2935:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2960:16, inlined from 'RenderGroup_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2977:16, inlined from 'RenderGroup_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In function 'RenderGroup_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1091:45, inlined from 'GraphicalPrimitive2D_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:1084:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp: In function 'GraphicalPrimitive2D_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1596:50, inlined from 'LineEnding_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1589:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In function 'LineEnding_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1610:10, inlined from 'GradientBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1603:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1626:10, inlined from 'GradientBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:1619:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In function 'GradientBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:872:16, inlined from 'GradientStop_getStopColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:864:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp: In function 'GradientStop_getStopColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1490:39, inlined from 'GraphicalPrimitive1D_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1483:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1507:16, inlined from 'GraphicalPrimitive1D_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:1499:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp: In function 'GraphicalPrimitive1D_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1336:16, inlined from 'ColorDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1329:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1352:10, inlined from 'ColorDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1345:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1368:53, inlined from 'ColorDefinition_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:1361:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp: In function 'ColorDefinition_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3705:41, inlined from 'DefaultValues_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3697:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3748:52, inlined from 'DefaultValues_getFill' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3741:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFill': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3791:54, inlined from 'DefaultValues_getStroke' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3784:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStroke': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3819:16, inlined from 'DefaultValues_getFontFamily' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getFontFamily': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3944:16, inlined from 'DefaultValues_getStartHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getStartHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3961:16, inlined from 'DefaultValues_getEndHead' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:3953:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp: In function 'DefaultValues_getEndHead': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1415:45, inlined from 'Input_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1410:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1426:10, inlined from 'Input_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1421:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1448:10, inlined from 'Input_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1443:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In function 'Input_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1318:35, inlined from 'Output_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1313:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1329:35, inlined from 'Output_getQualitativeSpecies' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1324:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getQualitativeSpecies': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1351:35, inlined from 'Output_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1346:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In function 'Output_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:822:1, inlined from 'CompartmentReference_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:817:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:833:10, inlined from 'CompartmentReference_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:828:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:844:10, inlined from 'CompartmentReference_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In function 'CompartmentReference_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:922:22, inlined from 'InSpeciesTypeBond_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:933:22, inlined from 'InSpeciesTypeBond_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:944:22, inlined from 'InSpeciesTypeBond_getBindingSite1' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:939:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite1': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:955:22, inlined from 'InSpeciesTypeBond_getBindingSite2' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:950:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In function 'InSpeciesTypeBond_getBindingSite2': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:820:22, inlined from 'PossibleSpeciesFeatureValue_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:815:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:831:22, inlined from 'PossibleSpeciesFeatureValue_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:826:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:842:22, inlined from 'PossibleSpeciesFeatureValue_getNumericValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:837:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In function 'PossibleSpeciesFeatureValue_getNumericValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:826:76, inlined from 'MultiCompartmentPlugin_getCompartmentType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:818:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In function 'MultiCompartmentPlugin_getCompartmentType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcAssociation_toInfix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1254:36: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In function 'FbcAssociation_toInfix': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:352:1, inlined from 'Deletion_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:363:10, inlined from 'Deletion_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:358:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp: In function 'Deletion_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1641:10, inlined from 'Style_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1634:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1657:10, inlined from 'Style_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp:1650:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/Style.cpp: In function 'Style_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2321:52, inlined from 'RenderInformationBase_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2314:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2337:10, inlined from 'RenderInformationBase_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2330:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2355:10, inlined from 'RenderInformationBase_getProgramName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2347:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2373:10, inlined from 'RenderInformationBase_getProgramVersion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2365:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getProgramVersion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2392:16, inlined from 'RenderInformationBase_getReferenceRenderInformation' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2383:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getReferenceRenderInformation': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2410:16, inlined from 'RenderInformationBase_getBackgroundColor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:2402:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In function 'RenderInformationBase_getBackgroundColor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1410:66, inlined from 'QualitativeSpecies_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1405:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1421:10, inlined from 'QualitativeSpecies_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1416:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1440:10, inlined from 'QualitativeSpecies_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1435:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In function 'QualitativeSpecies_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1844:32, inlined from 'Transition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1839:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1855:32, inlined from 'Transition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1850:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In function 'Transition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1453:1, inlined from 'Submodel_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1448:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1464:10, inlined from 'Submodel_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1459:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1475:10, inlined from 'Submodel_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1470:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1494:10, inlined from 'Submodel_getTimeConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1489:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getTimeConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1505:10, inlined from 'Submodel_getExtentConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:1500:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In function 'Submodel_getExtentConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:667:22, inlined from 'SpeciesFeatureValue_getValue' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:662:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In function 'SpeciesFeatureValue_getValue': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:941:22, inlined from 'SpeciesTypeComponentIndex_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:936:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:952:22, inlined from 'SpeciesTypeComponentIndex_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:947:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:963:22, inlined from 'SpeciesTypeComponentIndex_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:958:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:974:22, inlined from 'SpeciesTypeComponentIndex_getIdentifyingParent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:969:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In function 'SpeciesTypeComponentIndex_getIdentifyingParent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1010:22, inlined from 'SpeciesTypeComponentMapInProduct_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1005:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1021:22, inlined from 'SpeciesTypeComponentMapInProduct_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1016:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1032:22, inlined from 'SpeciesTypeComponentMapInProduct_getReactant' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1027:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactant': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1043:22, inlined from 'SpeciesTypeComponentMapInProduct_getReactantComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1038:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getReactantComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1054:22, inlined from 'SpeciesTypeComponentMapInProduct_getProductComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:1049:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In function 'SpeciesTypeComponentMapInProduct_getProductComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:412:72, inlined from 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:403:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In function 'MultiSimpleSpeciesReferencePlugin_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1100:74, inlined from 'MultiSpeciesPlugin_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:1092:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In function 'MultiSpeciesPlugin_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:922:45, inlined from 'OutwardBindingSite_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:917:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:933:10, inlined from 'OutwardBindingSite_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:928:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:967:46, inlined from 'OutwardBindingSite_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:962:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In function 'OutwardBindingSite_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1547:82, inlined from 'SpeciesFeature_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1540:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1563:82, inlined from 'SpeciesFeature_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1556:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1581:82, inlined from 'SpeciesFeature_getSpeciesFeatureType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1573:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getSpeciesFeatureType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1609:23, inlined from 'SpeciesFeature_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1601:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In function 'SpeciesFeature_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1080:47, inlined from 'SpeciesFeatureType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1075:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1091:47, inlined from 'SpeciesFeatureType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1086:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In function 'SpeciesFeatureType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1725:43, inlined from 'MultiSpeciesType_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1720:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1736:10, inlined from 'MultiSpeciesType_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1731:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1749:10, inlined from 'MultiSpeciesType_getCompartment' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1744:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In function 'MultiSpeciesType_getCompartment': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'UnitDefinition_printUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp:2735:16: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/UnitDefinition.cpp: In function 'UnitDefinition_printUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4012:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getClass' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4022:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getClass': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getStyle' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4032:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getStyle': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getUnits' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4041:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getUnits': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:935:62, inlined from 'SpeciesTypeInstance_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:930:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:946:10, inlined from 'SpeciesTypeInstance_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:941:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:957:10, inlined from 'SpeciesTypeInstance_getSpeciesType' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:952:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getSpeciesType': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:968:10, inlined from 'SpeciesTypeInstance_getCompartmentReference' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:963:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In function 'SpeciesTypeInstance_getCompartmentReference': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:903:35, inlined from 'SubListOfSpeciesFeatures_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:896:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:921:35, inlined from 'SubListOfSpeciesFeatures_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:913:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:969:48, inlined from 'SubListOfSpeciesFeatures_getComponent' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:961:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In function 'SubListOfSpeciesFeatures_getComponent': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1037:45, inlined from 'Member_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1030:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1053:10, inlined from 'Member_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1046:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1069:10, inlined from 'Member_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1062:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1086:10, inlined from 'Member_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp:1078:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Member.cpp: In function 'Member_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcSpeciesPlugin_getChemicalFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:872:24, inlined from 'FbcSpeciesPlugin_getChemicalFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:866:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp: In function 'FbcSpeciesPlugin_getChemicalFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FluxBound_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1240:18, inlined from 'FluxBound_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1235:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In function 'FluxBound_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FluxBound_getReaction' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1310:23, inlined from 'FluxBound_getReaction' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1305:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In function 'FluxBound_getReaction': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1388:27, inlined from 'Group_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1381:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1404:10, inlined from 'Group_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp:1397:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In function 'Group_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:645:15, inlined from 'ListOfMembers_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:637:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:662:15, inlined from 'ListOfMembers_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:654:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In function 'ListOfMembers_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcReactionPlugin_getUpperFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1000:66, inlined from 'FbcReactionPlugin_getUpperFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:994:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In function 'FbcReactionPlugin_getUpperFluxBound': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FbcReactionPlugin_getLowerFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1043:18, inlined from 'FbcReactionPlugin_getLowerFluxBound' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:1037:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In function 'FbcReactionPlugin_getLowerFluxBound': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:401:11, inlined from 'Port_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:396:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:412:10, inlined from 'Port_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp:407:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/Port.cpp: In function 'Port_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedBy_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:243:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp: In function 'ReplacedBy_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getSubmodelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:543:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getSubmodelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:554:56, inlined from 'ReplacedElement_getDeletion' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:549:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getDeletion': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:565:64, inlined from 'ReplacedElement_getConversionFactor' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:560:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp: In function 'ReplacedElement_getConversionFactor': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1106:56, inlined from 'SBaseRef_getPortRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1101:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getPortRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1117:10, inlined from 'SBaseRef_getIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1112:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1128:10, inlined from 'SBaseRef_getUnitRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1123:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getUnitRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1139:10, inlined from 'SBaseRef_getMetaIdRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:1134:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In function 'SBaseRef_getMetaIdRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:783:57, inlined from 'ExternalModelDefinition_getId' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:778:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getId': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:794:10, inlined from 'ExternalModelDefinition_getSource' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:789:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getSource': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:805:10, inlined from 'ExternalModelDefinition_getName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:800:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:816:10, inlined from 'ExternalModelDefinition_getModelRef' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:811:1: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp: In function 'ExternalModelDefinition_getModelRef': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'ASTNode_getDefinitionURLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp:4654:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/ASTNode.cpp: In function 'ASTNode_getDefinitionURLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'FormulaTokenizer_createFromFormula' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp:77:28: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/FormulaTokenizer.cpp: In function 'FormulaTokenizer_createFromFormula': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLErrorLog_toString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp:454:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLErrorLog.cpp: In function 'XMLErrorLog_toString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_toXMLString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1357:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_toXMLString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'XMLNode_convertXMLNodeToString' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp:1366:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/XMLNode.cpp: In function 'XMLNode_convertXMLNodeToString': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLDocument_getLocationURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp:2465:35: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLDocument.cpp: In function 'SBMLDocument_getLocationURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBasePluginCreator_getSupportedPackageURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:201:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp: In function 'SBasePluginCreator_getSupportedPackageURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBasePluginCreator_getSupportedPackageURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:201:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp: In function 'SBasePluginCreator_getSupportedPackageURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'getRegisteredPackageNames' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:448:31: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'getRegisteredPackageNames': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLExtensionRegistry_getRegisteredPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:752:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In function 'SBMLExtensionRegistry_getRegisteredPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_vsnprintf' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:126:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_vsnprintf': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strdup': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'c_locale_strtod' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:145:23: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'c_locale_strtod': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:199:10: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:194:24: note: length computed here 194 | len1 = (int)strlen(str1); | ^ In function 'strncat', inlined from 'safe_strcat' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:201:10: /usr/include/bits/string_fortified.h:137:34: warning: '__builtin_strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp: In function 'safe_strcat': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:195:24: note: length computed here 195 | len2 = (int)strlen(str2); | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBML_getLastParseL3Error' at L3Parser.ypp:1533:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ L3Parser.ypp: In function 'SBML_getLastParseL3Error': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBMLNamespaces_getSBMLNamespaceURI' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp:858:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBMLNamespaces.cpp: In function 'SBMLNamespaces_getSBMLNamespaceURI': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ In function 'strncpy', inlined from 'safe_strdup' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:220:10, inlined from 'SBase_getPackageName' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp:8045:21: /usr/include/bits/string_fortified.h:106:34: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/SBase.cpp: In function 'SBase_getPackageName': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/util.cpp:216:21: note: length computed here 216 | size = strlen(s) + 1; | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target test_sbml_sbml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 97%] Linking CXX shared library libsbmlj.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_java_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libsbmlj.so -o libsbmlj.so CMakeFiles/binding_java_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target binding_java_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -L/usr/lib64/R/lib ../../libsbml-static.a -lR -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target binding_r_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/depend.internal". Dependee "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/depend.internal". Scanning dependencies of target binding_r_package make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Building CXX object src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby/../swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = long int]': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5001:127: required from here /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4027:69: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4027 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4027:82: warning: comparison of integer expressions of different signedness: 'long int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4027 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of 'Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = int]': /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5123:131: required from here /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4027:69: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4027 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4027:82: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 4027 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_ruby_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lruby -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_ruby_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 92%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/../swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -I/usr/include/python3.9 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Linking CXX shared library _libsbml.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,_libsbml.so -o _libsbml.so CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:5, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:10: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^ /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121:31: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Building CXX object src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libSBML-5.18.0-Source/include -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/../swig -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -o CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/LibSBML.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Linking CXX shared module LibSBML.so cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o LibSBML.so CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o ../../libsbml-static.a -lperl -lbz2 -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' In function 'strncpy', inlined from 'file_build_ioposix' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:123:0, inlined from 'fopen_file_func' at /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:141:0: /usr/include/bits/string_fortified.h:106: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp: In function 'fopen_file_func': /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/compress/ioapi.c:121: note: length computed here 121 | ioposix->filenameLength = strlen(filename) + 1; | make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML_5.18.0_R_x86_64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.18.0-Source/build/CMakeFiles 0 + popd ~/build/BUILD/libSBML-5.18.0-Source ~/build/BUILD/libSBML-5.18.0-Source/build-docs ~/build/BUILD/libSBML-5.18.0-Source + pushd build-docs + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2019-04-06 14:48:29.000000000 +0000 +++ ./configure 2020-08-05 09:39:19.243362366 +0000 @@ -2212,7 +2212,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2020-08-05 09:39:19.243362366 +0000 +++ ./configure 2020-08-05 09:39:19.276362433 +0000 @@ -11182,7 +11182,7 @@ sympat='\([_A-Za-z][_A-Za-z0-9]*\)' # Transform an extracted symbol line into a proper C declaration -lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'" +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" # Transform an extracted symbol line into symbol name and symbol address lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'" + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./src/bindings/r/configure + diff -u ./src/bindings/r/configure.backup ./src/bindings/r/configure + mv ./src/bindings/r/configure.backup ./src/bindings/r/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./src/bindings/r/configure + diff -u ./src/bindings/r/configure.backup ./src/bindings/r/configure + mv ./src/bindings/r/configure.backup ./src/bindings/r/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./src/bindings/r/configure + diff -u ./src/bindings/r/configure.backup ./src/bindings/r/configure + mv ./src/bindings/r/configure.backup ./src/bindings/r/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./src/bindings/r/configure + diff -u ./src/bindings/r/configure.backup ./src/bindings/r/configure + mv ./src/bindings/r/configure.backup ./src/bindings/r/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./src/bindings/r/configure + diff -u ./src/bindings/r/configure.backup ./src/bindings/r/configure + mv ./src/bindings/r/configure.backup ./src/bindings/r/configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config/config.guess ++ basename ./config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './config/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config/config.sub ++ basename ./config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './config/config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./config/ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-static --with-expat=no --with-libxml=yes --with-python --with-python-interpreter=/usr/bin/python3 --enable-layout --enable-comp --enable-fbc --enable-qual configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets $(MAKE)... yes checking for autoconf... autoconf checking for aclocal... aclocal checking whether -Wno-long-double is supported... yes checking whether /usr/bin/python3 exists... yes checking for Python prefix... /usr checking for Python include path... -I/usr/include/python3.9 checking for python3.9-config... /usr/bin/python3.9-config checking /usr/bin/python3.9-config --ldflags... done checking /usr/bin/python3.9-config --libs... done checking whether this is a 64-bit version of Python... yes checking whether only 32-bit libSBML binaries are being made... no checking whether SWIG is required for Python bindings.... yes checking for swig... /usr/bin/swig checking /usr/bin/swig version >= 2.0.0... yes (found 4.0.2) checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for x86_64-redhat-linux-gnu-g77... no checking for x86_64-redhat-linux-gnu-xlf... no checking for x86_64-redhat-linux-gnu-f77... no checking for x86_64-redhat-linux-gnu-frt... no checking for x86_64-redhat-linux-gnu-pgf77... no checking for x86_64-redhat-linux-gnu-cf77... no checking for x86_64-redhat-linux-gnu-fort77... no checking for x86_64-redhat-linux-gnu-fl32... no checking for x86_64-redhat-linux-gnu-af77... no checking for x86_64-redhat-linux-gnu-xlf90... no checking for x86_64-redhat-linux-gnu-f90... no checking for x86_64-redhat-linux-gnu-pgf90... no checking for x86_64-redhat-linux-gnu-pghpf... no checking for x86_64-redhat-linux-gnu-epcf90... no checking for x86_64-redhat-linux-gnu-gfortran... no checking for x86_64-redhat-linux-gnu-g95... no checking for x86_64-redhat-linux-gnu-xlf95... no checking for x86_64-redhat-linux-gnu-f95... no checking for x86_64-redhat-linux-gnu-fort... no checking for x86_64-redhat-linux-gnu-ifort... no checking for x86_64-redhat-linux-gnu-ifc... no checking for x86_64-redhat-linux-gnu-efc... no checking for x86_64-redhat-linux-gnu-pgfortran... no checking for x86_64-redhat-linux-gnu-pgf95... no checking for x86_64-redhat-linux-gnu-lf95... no checking for x86_64-redhat-linux-gnu-ftn... no checking for x86_64-redhat-linux-gnu-nagfor... no checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for x86_64-redhat-linux-gnu-ar... no checking for ar... ar checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate checking for bash... /usr/bin/bash checking if dolt supports this host... yes, replacing libtool checking for isnan in -lm... yes checking for xml2-config... /usr/bin/xml2-config checking for libxml2 - version >= 2.6.16... yes (version 2.9.10) checking for zlib library... yes checking for deflate in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for possibly buggy zlib... no checking for bzip2 library... yes checking for BZ2_bzopen in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for ANSI C header files... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for size_t... yes configure: creating ./config.status config.status: creating config/makefile-common-vars.mk config.status: creating config/lt_link_helper.sh config.status: creating config/mkoctfile_wrapper.sh config.status: creating config/chk_swig_version.sh config.status: creating ./Makefile config.status: creating libsbml.spec config.status: creating src/Makefile config.status: creating src/sbml/common/Makefile config.status: creating src/sbml/common/libsbml-version.h config.status: creating src/bindings/Makefile config.status: creating src/bindings/python/Makefile config.status: creating src/bindings/python/setup.py config.status: creating src/bindings/perl/Makefile config.status: creating src/bindings/perl/Makefile.PL config.status: creating src/bindings/matlab/Makefile config.status: creating src/bindings/matlab/test/Makefile config.status: creating src/bindings/octave/Makefile config.status: creating src/bindings/octave/test/Makefile config.status: creating src/bindings/java/Makefile config.status: creating src/bindings/java/Manifest.txt config.status: creating src/bindings/ruby/Makefile config.status: creating src/bindings/csharp/Makefile config.status: creating src/sbml/annotation/Makefile config.status: creating src/sbml/annotation/test/Makefile config.status: creating src/sbml/math/Makefile config.status: creating src/sbml/math/test/Makefile config.status: creating src/sbml/units/Makefile config.status: creating src/sbml/units/test/Makefile config.status: creating src/sbml/Makefile config.status: creating src/sbml/test/Makefile config.status: creating src/sbml/util/Makefile config.status: creating src/sbml/util/test/Makefile config.status: creating src/sbml/validator/Makefile config.status: creating src/sbml/validator/constraints/Makefile config.status: creating src/sbml/validator/test/Makefile config.status: creating src/sbml/validator/test/test-data/Makefile config.status: creating src/sbml/validator/test/test-data/sbml-general-consistency-constraints/Makefile config.status: creating src/sbml/xml/Makefile config.status: creating src/sbml/xml/test/Makefile config.status: creating src/sbml/compress/Makefile config.status: creating src/sbml/extension/Makefile config.status: creating src/sbml/extension/test/Makefile config.status: creating src/sbml/extension/RegisterExtensions.h config.status: creating src/sbml/extension/RegisterExtensions.cxx config.status: creating src/sbml/conversion/Makefile config.status: creating src/sbml/conversion/test/Makefile config.status: creating src/sbml/packages/Makefile config.status: creating src/sbml/packages/comp/Makefile config.status: creating src/sbml/packages/comp/common/Makefile config.status: creating src/sbml/packages/comp/extension/Makefile config.status: creating src/sbml/packages/comp/extension/test/Makefile config.status: creating src/sbml/packages/comp/sbml/Makefile config.status: creating src/sbml/packages/comp/sbml/test/Makefile config.status: creating src/sbml/packages/comp/util/Makefile config.status: creating src/sbml/packages/comp/util/test/Makefile config.status: creating src/sbml/packages/comp/validator/Makefile config.status: creating src/sbml/packages/comp/validator/constraints/Makefile config.status: creating src/sbml/packages/comp/validator/test/Makefile config.status: creating src/sbml/packages/comp/validator/test/test-data/Makefile config.status: creating examples/c++/comp/Makefile config.status: creating examples/c/comp/Makefile config.status: creating src/sbml/packages/fbc/common/Makefile config.status: creating src/sbml/packages/fbc/extension/Makefile config.status: creating src/sbml/packages/fbc/extension/test/Makefile config.status: creating src/sbml/packages/fbc/Makefile config.status: creating src/sbml/packages/fbc/sbml/Makefile config.status: creating src/sbml/packages/fbc/util/Makefile config.status: creating src/sbml/packages/fbc/validator/constraints/Makefile config.status: creating src/sbml/packages/fbc/validator/Makefile config.status: creating src/sbml/packages/fbc/validator/test/Makefile config.status: creating src/sbml/packages/fbc/validator/test/test-data/Makefile config.status: creating examples/c++/fbc/Makefile config.status: creating src/sbml/packages/layout/Makefile config.status: creating src/sbml/packages/layout/common/Makefile config.status: creating src/sbml/packages/layout/extension/Makefile config.status: creating src/sbml/packages/layout/sbml/Makefile config.status: creating src/sbml/packages/layout/sbml/test/Makefile config.status: creating src/sbml/packages/layout/util/Makefile config.status: creating src/sbml/packages/layout/validator/Makefile config.status: creating src/sbml/packages/layout/validator/constraints/Makefile config.status: creating src/sbml/packages/layout/validator/test/Makefile config.status: creating src/sbml/packages/layout/validator/test/test-data/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/common/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/extension/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/extension/test/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/validator/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/validator/constraints/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/validator/test/Makefile config.status: creating src/sbml/packages/l3v2extendedmath/validator/test/test-data/Makefile config.status: creating src/sbml/packages/qual/Makefile config.status: creating src/sbml/packages/qual/common/Makefile config.status: creating src/sbml/packages/qual/extension/Makefile config.status: creating src/sbml/packages/qual/sbml/Makefile config.status: creating src/sbml/packages/qual/sbml/test/Makefile config.status: creating src/sbml/packages/qual/validator/Makefile config.status: creating src/sbml/packages/qual/validator/constraints/Makefile config.status: creating src/sbml/packages/qual/validator/test/Makefile config.status: creating src/sbml/packages/qual/validator/test/test-data/Makefile config.status: creating examples/c++/qual/Makefile config.status: creating docs/Makefile config.status: creating docs/index.html config.status: creating docs/src/Makefile config.status: creating docs/src/doxygen-config-c.txt config.status: creating docs/src/doxygen-config-cpp.txt config.status: creating docs/src/doxygen-config-csharp.txt config.status: creating docs/src/doxygen-config-octave.txt config.status: creating docs/src/doxygen-config-python.txt config.status: creating docs/src/doxygen-config-perl.txt config.status: creating docs/src/doxygen-config-matlab.txt config.status: creating docs/src/common-text/libsbml-downloading.html config.status: creating docs/src/common-text/libsbml-group-comp-intro.html config.status: creating docs/src/common-text/libsbml-group-fbc-intro.html config.status: creating docs/src/common-text/libsbml-group-groups-intro.html config.status: creating docs/src/common-text/libsbml-group-layout-intro.html config.status: creating docs/src/common-text/libsbml-group-multi-intro.html config.status: creating docs/src/common-text/libsbml-group-qual-intro.html config.status: creating docs/src/common-text/libsbml-group-render-intro.html config.status: creating docs/src/common-text/libsbml-installation.html config.status: creating docs/src/common-text/libsbml-version.html config.status: creating docs/src/common-text/sbml-specifications-table.html config.status: creating docs/src/java-substitutions/libsbmlConstants.java config.status: creating examples/c/Makefile config.status: creating examples/c++/Makefile config.status: creating examples/java/Makefile config.status: creating examples/csharp/Makefile config.status: creating examples/c++/layout/Makefile config.status: creating src/bindings/csharp/local-downcast-astplugins.i config.status: creating src/bindings/csharp/local-downcast-extension.i config.status: creating src/bindings/csharp/local-downcast-namespaces.i config.status: creating src/bindings/csharp/local-downcast-converters.i config.status: creating src/bindings/csharp/local-packages.i config.status: creating src/bindings/java/local-downcast-astplugins.i config.status: creating src/bindings/java/local-downcast-extension.i config.status: creating src/bindings/java/local-downcast-namespaces.i config.status: creating src/bindings/java/local-downcast-converters.i config.status: creating src/bindings/java/local-packages.i config.status: creating src/bindings/perl/local-downcast.cpp config.status: creating src/bindings/perl/local-downcast-astplugins.cpp config.status: creating src/bindings/perl/local-downcast-extension.cpp config.status: creating src/bindings/perl/local-downcast-namespaces.cpp config.status: creating src/bindings/perl/local-downcast-converters.cpp config.status: creating src/bindings/perl/local-downcast-plugins.cpp config.status: creating src/bindings/perl/local-packages.i config.status: creating src/bindings/python/local-downcast.cpp config.status: creating src/bindings/python/local-downcast-astplugins.cpp config.status: creating src/bindings/python/local-downcast-extension.cpp config.status: creating src/bindings/python/local-downcast-namespaces.cpp config.status: creating src/bindings/python/local-downcast-converters.cpp config.status: creating src/bindings/python/local-downcast-plugins.cpp config.status: creating src/bindings/python/local-packages.i config.status: creating src/bindings/ruby/local-downcast.cpp config.status: creating src/bindings/ruby/local-downcast-astplugins.cpp config.status: creating src/bindings/ruby/local-downcast-extension.cpp config.status: creating src/bindings/ruby/local-downcast-namespaces.cpp config.status: creating src/bindings/ruby/local-downcast-converters.cpp config.status: creating src/bindings/ruby/local-downcast-plugins.cpp config.status: creating src/bindings/ruby/local-packages.i config.status: creating src/bindings/swig/libsbml-packages.h config.status: creating src/bindings/swig/libsbml-packages.i config.status: creating macosx/Makefile config.status: creating macosx/build.sh config.status: creating macosx/resources/package-intro.txt config.status: creating macosx/resources/package-readme.txt config.status: creating macosx/libsbml-package.pmdoc/01local-contents.xml config.status: creating macosx/libsbml-package.pmdoc/01local.xml config.status: creating macosx/libsbml-package.pmdoc/index.xml config.status: creating src/sbml/common/libsbml-config-common.h config.status: creating src/sbml/common/libsbml-package.h config.status: src/sbml/common/libsbml-package.h is unchanged config.status: creating src/sbml/common/libsbml-namespace.h config.status: src/sbml/common/libsbml-namespace.h is unchanged configure: WARNING: unrecognized options: --disable-dependency-tracking ---------------------------------------------------------------------- libSBML version 5.18.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host "buildhw-x86-11.iad2.fedoraproject.org" host type = linux host vendor = redhat host operating system = linux-gnu host CPU architecture = x86_64 General build flags: CC = gcc CXX = g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection CFLAGS_ARCH = CXXFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection CXXFLAGS_ARCH = LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld LDFLAGS_ARCH = LIBS = -lm -lz -lbz2 XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LDFLAGS for XML = LIBS for XML = -lxml2 -lz -llzma -lm -ldl XML2_CONFIG = /usr/bin/xml2-config Other libSBML configuration settings: Installation $prefix = /usr Using SWIG with path = /usr/bin/swig Using Python with path = /usr/bin/python3 Using zlib with path = autodetect Using bzip2 with path = autodetect Support for SBML packages: SBML 'comp' = yes SBML 'fbc' = yes SBML 'layout' = yes SBML 'qual' = yes Other potentially important settings: Compression support is enabled for .zip, .gz and .bz2 files Value of $LD_LIBRARY_PATH = ---------------------------------------------------------------------- + /usr/bin/make -O -j48 V=1 VERBOSE=1 libsbml.pc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6ZWsla + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 ++ dirname /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 + cd libSBML-5.18.0-Source + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/cmake -S/builddir/build/BUILD/libSBML-5.18.0-Source -B/builddir/build/BUILD/libSBML-5.18.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.18.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.18.0-Source/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 35%] Built target sbml-static /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Built target sbml /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 69%] Built target test_comp_extensions /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 70%] Built target test_comp_sbase /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Built target test_comp_util /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Built target test_comp_validator /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Built target test_sbml_package_fbc /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 71%] Built target test_fbc_validator /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Built target test_extension_package_groups /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 72%] Built target test_groups_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Built target test_l3v2extendedmath_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 73%] Built target test_extension_package_l3v2extendedmath /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Built target test_sbml_package_layout /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Built target test_layout_validator /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Built target test_sbml_package_multi /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 75%] Built target test_multi_validator /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 76%] Built target test_extension_package_qual /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 77%] Built target test_sbml_package_qual /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 78%] Built target test_qual_validator /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Built target test_sbml_package_render /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 81%] Built target test_render_validator /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 82%] Built target test_sbml_annotation /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 83%] Built target test_sbml_conversion /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 84%] Built target test_sbml_extension /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 86%] Built target test_sbml_math /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 94%] Built target test_sbml_sbml /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 95%] Built target test_sbml_units /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Built target test_sbml_util /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 96%] Built target test_sbml_validator /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target test_sbml_xml /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/csharp/CMakeFiles/binding_csharp_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target binding_csharp_swig /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/csharp/CMakeFiles/binding_csharp_managed_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target binding_csharp_managed_lib /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build.make src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/csharp/CMakeFiles/binding_csharp_native_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target binding_csharp_native_lib /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_swig.dir/build.make src/bindings/java/CMakeFiles/binding_java_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target binding_java_swig /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_jar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_jar.dir/build.make src/bindings/java/CMakeFiles/binding_java_jar.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_jar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target binding_java_jar /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/CMakeFiles/binding_java_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/java/CMakeFiles/binding_java_lib.dir/build.make src/bindings/java/CMakeFiles/binding_java_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/java/CMakeFiles/binding_java_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target binding_java_lib /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 98%] Built target binding_perl_swig /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target binding_perl_lib /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target binding_python_swig /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target binding_python_lib /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [ 99%] Built target binding_ruby_swig /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_ruby_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_r_swig /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_r_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' cd /builddir/build/BUILD/libSBML-5.18.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.18.0-Source /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML_5.18.0_R_x86_64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.18.0-Source/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml/COPYING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml/FUNDING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml/LICENSE.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml/NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml/OLD_NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml/README.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml/VERSION.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/pkgconfig/libsbml.pc -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/common/CompExtensionTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/common/compfwd.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/extension/CompExtension.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/extension/CompModelPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/extension/CompSBasePlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/CompBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/Deletion.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ExternalModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ListOfDeletions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ListOfModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ListOfPorts.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ListOfReplacedElements.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ListOfSubmodels.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/Port.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ReplacedBy.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/ReplacedElement.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/Replacing.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/SBaseRef.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/sbml/Submodel.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/util/CompFlatteningConverter.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/util/SBMLFileResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/util/SBMLResolver.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/util/SBMLResolverRegistry.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/util/SBMLUri.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/CompConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/CompSBMLError.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/CompSBMLErrorTable.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/CompUnitConsistencyValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/CompValidator.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/ClassReplacements.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/CompIdBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueComponentIds.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueModelIds.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniquePortIds.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniquePortReferences.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/comp/validator/constraints/UnitReplacementCheck.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/packages/fbc/common/FbcExtensionTypes.h -- Installing: 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/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBMLNamespaces.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBMLReader.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBMLTransforms.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBMLTypeCodes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBMLTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBMLVisitor.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBMLWriter.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBO.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SimpleSpeciesReference.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/Species.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SpeciesReference.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SpeciesType.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/StoichiometryMath.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/SyntaxChecker.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/Trigger.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/Unit.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/include/sbml/UnitDefinition.h -- Installing: 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/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib/mono/libsbmlcsP/libsbmlcsP.dll -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbmlj.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/java/libsbmlj.jar -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/perl5/vendor_perl/LibSBML.pod -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/perl5/vendor_perl/LibSBML.pm -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/python3.9/site-packages/libsbml/_libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/python3.9/site-packages/libsbml.pth -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/python3.9/site-packages/libsbml/libsbml.py -- Installing: /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/ruby/vendor_ruby/libSBML.so Notice: the libSBML R interface must be installed separately. To install it, please execute the following shell command: R CMD INSTALL /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/r/libSBML_5.18.0_R_x86_64-redhat-linux-gnu.tar.gz make: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build' + rm -rf /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/libsbml + mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbml /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib/java + mv /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/java/libsbmlj.jar /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib/java/ + mv /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbmlj.so /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbml/ + mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/R/library build/src/bindings/r/libSBML_5.18.0_R_x86_64-redhat-linux-gnu.tar.gz * installing *binary* package 'libSBML' ... * DONE (libSBML) + rm -rf /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/R/library/libSBML/R.css + make -C build-docs install-pc DESTDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 make: Entering directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build-docs' /builddir/build/BUILD/libSBML-5.18.0-Source/build-docs/config/install-sh -c libsbml.pc -m 0644 "/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/pkgconfig/libsbml.pc" make: Leaving directory '/builddir/build/BUILD/libSBML-5.18.0-Source/build-docs' + install -Dm0644 src/bindings/ruby/README.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/doc/libsbml/README-ruby.txt + /usr/lib/rpm/find-debuginfo.sh -j48 --strict-build-id -m -i --build-id-seed 5.18.0-18.fc33 --unique-debug-suffix -5.18.0-18.fc33.x86_64 --unique-debug-src-base libsbml-5.18.0-18.fc33.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libSBML-5.18.0-Source explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/R/library/libSBML/libs/libSBML.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbml/libsbmlj.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbml.so.5.18.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib/mono/libsbmlcsP/libsbmlcs.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/python3.9/site-packages/libsbml/_libsbml.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/ruby/vendor_ruby/libSBML.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbml/libsbmlj.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/libsbml.so.5.18.0 extracting debug info from /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib/mono/libsbmlcsP/libsbmlcs.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/python3.9/site-packages/libsbml/_libsbml.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/ruby/vendor_ruby/libSBML.so extracting debug info from /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/R/library/libSBML/libs/libSBML.so original debug info size: 1014208kB, size after compression: 761696kB /usr/lib/rpm/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match. cpio: build/src/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/L3Parser.ypp: Cannot stat: No such file or directory cpio: build/src/bindings/csharp/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/bindings/csharp/L3Parser.ypp: Cannot stat: No such file or directory cpio: build/src/bindings/java/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/bindings/java/L3Parser.ypp: Cannot stat: No such file or directory cpio: build/src/bindings/perl/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/bindings/perl/L3Parser.ypp: Cannot stat: No such file or directory cpio: build/src/bindings/python/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/bindings/python/L3Parser.ypp: Cannot stat: No such file or directory cpio: build/src/bindings/r/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/bindings/r/L3Parser.ypp: Cannot stat: No such file or directory cpio: build/src/bindings/ruby/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/bindings/ruby/L3Parser.ypp: Cannot stat: No such file or directory 152616 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib64/python3.9 using /usr/bin/python3.9 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/lib/debug/usr/lib64/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.faiUY6 + umask 022 + cd /builddir/build/BUILD ~/build/BUILD/libSBML-5.18.0-Source/build ~/build/BUILD/libSBML-5.18.0-Source + cd libSBML-5.18.0-Source + pushd build + ctest --force-new-ctest-process -VV -E test_ruby_binding UpdateCTestConfiguration from :/builddir/build/BUILD/libSBML-5.18.0-Source/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libSBML-5.18.0-Source/build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/libSBML-5.18.0-Source/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libSBML-5.18.0-Source/build/DartConfiguration.tcl Test project /builddir/build/BUILD/libSBML-5.18.0-Source/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_comp_extensions_run 1: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/extension/test/test_comp_extensions 1: Environment variables: 1: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/extension/test 1: Test timeout computed to be: 3000 1: Running suite(s): SBMLCompExtensionObjects 1: TestMultipleNamespaces 1: SBMLCompCheckConsistency 1: 100%: Checks: 14, Failures: 0, Errors: 0 1/73 Test #1: test_comp_extensions_run ...................... Passed 0.17 sec test 2 Start 2: test_comp_sbase_run 2: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/sbml/test/test_comp_sbase 2: Environment variables: 2: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/sbml/test 2: Test timeout computed to be: 3000 2: Running suite(s): SBMLCompSBaseObjects 2: SBMLCompIdNamspace 2: SBMLCompSBaseObjects 2: comp_deletion 2: comp_externalModelDefinition 2: comp_modelDefinition 2: comp_port 2: comp_replacedBy 2: comp_replacedElement 2: comp_sBaseRef 2: comp_submodel 2: 100%: Checks: 94, Failures: 0, Errors: 0 2/73 Test #2: test_comp_sbase_run ........................... Passed 0.11 sec test 3 Start 3: test_comp_util_run 3: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/util/test/test_comp_util 3: Environment variables: 3: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/util/test 3: Test timeout computed to be: 3000 3: Running suite(s): SBMLCompURIResolvers 3: SBMLCompLevelVersionConversion 3: SBMLCompFlatteningUnknownPackageRefs 3: SBMLCompFlatteningErrorMessages 3: SBMLCompFlatteningConverter 3: ExternalModelResolving 3: SBMLCompFlatteningNewFlags 3: SBMLCompFlatteningConverterStripPackage 3: 100%: Checks: 356, Failures: 0, Errors: 0 3/73 Test #3: test_comp_util_run ............................ Passed 1.96 sec test 4 Start 4: test_comp_validator_run 4: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/comp/validator/test/test_comp_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/test" 4: Environment variables: 4: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/test 4: Test timeout computed to be: 3000 4: 4: Validator testrunner 4: ==================== 4: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/comp/validator/test/test-data 4: 4: Testing General XML Consistency Constraints (20000 - 29999). 4: 100%: Checks: 280, Failures: 0 4: Testing Id Consistency Constraints (10300 - 10399). 4: 100%: Checks: 14, Failures: 0 4: Testing Unit Consistency Constraints (10500 - 10599). 4: 100%: Checks: 22, Failures: 0 4/73 Test #4: test_comp_validator_run ....................... Passed 0.27 sec test 5 Start 5: test_sbml_package_fbc_run 5: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/extension/test/test_sbml_package_fbc 5: Environment variables: 5: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/extension/test 5: Test timeout computed to be: 3000 5: Running suite(s): FbcExtension 5: WriteFbcExtension 5: ReadFbcExtension 5: FbcAssociation 5: 100%: Checks: 36, Failures: 0, Errors: 0 5/73 Test #5: test_sbml_package_fbc_run ..................... Passed 0.07 sec test 6 Start 6: test_fbc_validator_run 6: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/fbc/validator/test/test_fbc_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test" 6: Environment variables: 6: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test 6: Test timeout computed to be: 3000 6: 6: Validator testrunner 6: ==================== 6: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/fbc/validator/test/test-data 6: 6: Testing General XML Consistency Constraints (20000 - 29999). 6: 100%: Checks: 170, Failures: 0 6: Testing Id Consistency Constraints (10300 - 10399). 6: 100%: Checks: 11, Failures: 0 6/73 Test #6: test_fbc_validator_run ........................ Passed 0.15 sec test 7 Start 7: test_extension_package_groups_run 7: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/extension/test/test_extension_package_groups 7: Environment variables: 7: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/extension/test 7: Test timeout computed to be: 3000 7: Running suite(s): GroupsExtension 7: WriteGroupsExtension 7: ReadGroupsExtension 7: GroupsModelPlugin 7: 100%: Checks: 25, Failures: 0, Errors: 0 7/73 Test #7: test_extension_package_groups_run ............. Passed 0.03 sec test 8 Start 8: test_groups_validator_run 8: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/groups/validator/test/test_groups_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test" 8: Environment variables: 8: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test 8: Test timeout computed to be: 3000 8: 8: Validator testrunner 8: ==================== 8: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/groups/validator/test/test-data 8: 8: Testing General XML Consistency Constraints (20000 - 29999). 8: 100%: Checks: 95, Failures: 0 8: Testing Id Consistency Constraints (10300 - 10399). 8: 100%: Checks: 11, Failures: 0 8/73 Test #8: test_groups_validator_run ..................... Passed 0.03 sec test 9 Start 9: test_l3v2extendedmath_validator_run 9: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test/test_l3v2extendedmath_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test" 9: Environment variables: 9: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test 9: Test timeout computed to be: 3000 9: 9: Validator testrunner 9: ==================== 9: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/test-data 9: 9: Testing MathML Consistency Constraints (10200 - 10299). 9: 100%: Checks: 4, Failures: 0 9: Testing Unit Consistency Constraints (10500 - 10599). 9: 100%: Checks: 6, Failures: 0 9/73 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.01 sec test 10 Start 10: test_extension_package_l3v2extendedmath_run 10: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/test_extension_package_l3v2extendedmath 10: Environment variables: 10: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/l3v2extendedmath/extension/test 10: Test timeout computed to be: 3000 10: Running suite(s): L3v2EMExtension 10: WriteL3v2EMExtension 10: ReadL3v2EMExtension 10: ReadWriteL3v2Infix 10: 100%: Checks: 17, Failures: 0, Errors: 0 10/73 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.02 sec test 11 Start 11: test_sbml_package_layout_run 11: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/sbml/test/test_sbml_package_layout 11: Environment variables: 11: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/sbml/test 11: Test timeout computed to be: 3000 11: Running suite(s): Point 11: Dimensions 11: BoundingBox 11: LineSegment 11: CubicBezier 11: Curve 11: GraphicalObject 11: CompartmentGlyph 11: SpeciesGlyph 11: ReactionGlyph 11: GeneralGlyph 11: ReferenceGlyph 11: SpeciesReferenceGlyph 11: TextGlyph 11: Layout 11: LayoutCreation 11: LayoutFormatter 11: SBMLHandler 11: LayoutWriting 11: 100%: Checks: 288, Failures: 0, Errors: 0 11/73 Test #11: test_sbml_package_layout_run .................. Passed 0.35 sec test 12 Start 12: test_layout_validator_run 12: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/layout/validator/test/test_layout_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test" 12: Environment variables: 12: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test 12: Test timeout computed to be: 3000 12: 12: Validator testrunner 12: ==================== 12: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/layout/validator/test/test-data 12: 12: Testing General XML Consistency Constraints (20000 - 29999). 12: 100%: Checks: 223, Failures: 0 12: Testing Id Consistency Constraints (10300 - 10399). 12: 100%: Checks: 18, Failures: 0 12/73 Test #12: test_layout_validator_run ..................... Passed 0.34 sec test 13 Start 13: test_sbml_package_multi_run 13: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/extension/test/test_sbml_package_multi 13: Environment variables: 13: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/extension/test 13: Test timeout computed to be: 3000 13: Running suite(s): MultiExtension 13: MultiCheckConsistency 13: MultiAST 13: 100%: Checks: 16, Failures: 0, Errors: 0 13/73 Test #13: test_sbml_package_multi_run ................... Passed 0.03 sec test 14 Start 14: test_multi_validator_run 14: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/multi/validator/test/test_multi_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test" 14: Environment variables: 14: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test 14: Test timeout computed to be: 3000 14: 14: Validator testrunner 14: ==================== 14: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/multi/validator/test/test-data 14: 14: Testing MathML Consistency Constraints (10200 - 10299). 14: 100%: Checks: 5, Failures: 0 14: Testing General XML Consistency Constraints (20000 - 29999). 14: 100%: Checks: 123, Failures: 0 14: Testing Id Consistency Constraints (10300 - 10999). 14: 100%: Checks: 16, Failures: 0 14/73 Test #14: test_multi_validator_run ...................... Passed 0.06 sec test 15 Start 15: test_extension_package_qual_run 15: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/extension/test/test_extension_package_qual 15: Environment variables: 15: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/extension/test 15: Test timeout computed to be: 3000 15: Running suite(s): QualExtension 15: WriteQualExtension 15: ReadQualExtension 15: GetAllElements 15: 100%: Checks: 20, Failures: 0, Errors: 0 15/73 Test #15: test_extension_package_qual_run ............... Passed 0.03 sec test 16 Start 16: test_sbml_package_qual_run 16: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/sbml/test/test_sbml_package_qual 16: Environment variables: 16: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/sbml/test 16: Test timeout computed to be: 3000 16: Running suite(s): Input 16: Output 16: FunctionTerm 16: Transition 16: QualitativeSpecies 16: DefaultTerm 16: ListOfFunctionTerms 16: CopyAndClone 16: 100%: Checks: 73, Failures: 0, Errors: 0 16/73 Test #16: test_sbml_package_qual_run .................... Passed 0.07 sec test 17 Start 17: test_qual_validator_run 17: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/qual/validator/test/test_qual_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test" 17: Environment variables: 17: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test 17: Test timeout computed to be: 3000 17: 17: Validator testrunner 17: ==================== 17: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/qual/validator/test/test-data 17: 17: Testing General XML Consistency Constraints (20000 - 29999). 17: 100%: Checks: 81, Failures: 0 17: Testing Id Consistency Constraints (10300 - 10399). 17: 100%: Checks: 4, Failures: 0 17: Testing Math Consistency Constraints (10200 - 10299). 17: 100%: Checks: 3, Failures: 0 17/73 Test #17: test_qual_validator_run ....................... Passed 0.08 sec test 18 Start 18: test_sbml_package_render_run 18: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/sbml/test/test_sbml_package_render 18: Environment variables: 18: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/sbml/test 18: Test timeout computed to be: 3000 18: Running suite(s): RenderExtension 18: RelAbsVector 18: ColorDefinition 18: GradientStop 18: RenderPoint 18: RenderCubicBezier 18: GradientBaseTest 18: LinearGradient 18: RadialGradient 18: Transformation 18: Transformation2D 18: Image 18: GraphicalPrimitive1D 18: RenderCurve 18: Text 18: GraphicalPrimitive2D 18: Rectangle 18: Ellipse 18: Polygon 18: Group 18: LineEnding 18: Style 18: GlobalStyle 18: LocalStyle 18: RenderInformationBase 18: GlobalRenderInformation 18: LocalRenderInformation 18: RenderReading 18: RenderWriting 18: 100%: Checks: 136, Failures: 0, Errors: 0 18/73 Test #18: test_sbml_package_render_run .................. Passed 0.45 sec test 19 Start 19: test_render_validator_run 19: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/packages/render/validator/test/test_render_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test" 19: Environment variables: 19: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test 19: Test timeout computed to be: 3000 19: 19: Validator testrunner 19: ==================== 19: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/packages/render/validator/test/test-data 19: 19: Testing General XML Consistency Constraints (20000 - 29999). 19: 100%: Checks: 111, Failures: 0 19/73 Test #19: test_render_validator_run ..................... Passed 0.07 sec test 20 Start 20: test_sbml_annotation_run 20: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/annotation/test/test_sbml_annotation 20: Environment variables: 20: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/annotation/test 20: Test timeout computed to be: 3000 20: Running suite(s): CVTerms 20: CVTerms_newSetters 20: ModelHistory 20: Date_newSetters 20: ModelCreator_newSetters 20: ModelHistory_newSetters 20: CopyAndClone 20: RDFAnnotation 20: RDFAnnotation2 20: Validation 20: RDFAnnotation_C 20: L3ModelHistory 20: SyncAnnotation 20: RDFAnnotationMetaid 20: RDFAnnotationNestedCVTerm 20: RDFAnnotationV4 20: 100%: Checks: 180, Failures: 0, Errors: 0 20/73 Test #20: test_sbml_annotation_run ...................... Passed 0.30 sec test 21 Start 21: test_sbml_conversion_run 21: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/conversion/test/test_sbml_conversion 21: Environment variables: 21: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/conversion/test 21: Test timeout computed to be: 3000 21: Running suite(s): ConversionOption 21: SBMLRuleConverter 21: ConversionProperties 21: SBMLConverterRegistry 21: UnitsConverter 21: UnitsConverter2 21: UnitsConverterL2 21: InferUnitsConverter 21: StripPackageConverter 21: LevelVersionConverter 21: RateOfConverter 21: 100%: Checks: 171, Failures: 0, Errors: 0 21/73 Test #21: test_sbml_conversion_run ...................... Passed 0.34 sec test 22 Start 22: test_sbml_extension_run 22: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/extension/test/test_sbml_extension 22: Environment variables: 22: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/extension/test 22: Test timeout computed to be: 3000 22: Running suite(s): SBaseExtensionPoint 22: SBasePlugin 22: SBasePluginCreator 22: SBasePluginCreatorBase 22: SBMLDocumentPlugin 22: SBMLExtension 22: SBMLExtensionNamespaces 22: SBMLExtensionRegistry 22: TestUnknownPackages 22: 100%: Checks: 30, Failures: 0, Errors: 0 22/73 Test #22: test_sbml_extension_run ....................... Passed 0.03 sec test 23 Start 23: test_sbml_math_run 23: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/math/test/test_sbml_math 23: Environment variables: 23: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/math/test 23: Test timeout computed to be: 3000 23: Running suite(s): ASTNode 23: FormulaFormatter 23: FormulaParser 23: L3FormulaFormatter 23: L3FormulaParser 23: L3FormulaParserC 23: FormulaTokenizer 23: ReadMathML 23: WriteMathML 23: WriteMathMLFromAST 23: test-data/mathML_1.xml 23: test-data/mathML_2.xml 23: TestValidASTNode 23: TestChildFunctions 23: TestGetValue 23: test-data/L3V2Math.xml 23: 100%: Checks: 685, Failures: 0, Errors: 0 23/73 Test #23: test_sbml_math_run ............................ Passed 0.64 sec test 24 Start 24: test_sbml_sbml_run 24: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/test/test_sbml_sbml 24: Environment variables: 24: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test 24: Test timeout computed to be: 3000 24: Running suite(s): ReadSBML 24: SBMLValidator API 24: RenameIDs 24: RemoveFromParent 24: GetMultipleObjects 24: WriteSBML 24: WriteL3SBML 24: WriteL3V2SBML 24: AlgebraicRule 24: AssignmentRule 24: Compartment 24: L3_Compartment 24: Compartment_newSetters 24: CompartmentType 24: CompartmentType_newSetters 24: CompartmentVolumeRule 24: Constraint 24: Constraint_newSetters 24: Delay 24: Event 24: L3_Event 24: Event_newSetters 24: EventAssignment 24: EventAssignment_newSetters 24: FunctionDefinition 24: FunctionDefinition_newSetters 24: InitialAssignment 24: InitialAssignment_newSetters 24: KineticLaw 24: KineticLaw_newSetters 24: L3_KineticLaw 24: ListOf 24: Model 24: L3_Model 24: Model_newSetters 24: ModifierSpeciesReference 24: Parameter 24: L3_Parameter 24: L3_LocalParameter 24: Parameter_newSetters 24: ParameterRule 24: Priority 24: RateRule 24: Reaction 24: L3_Reaction 24: Reaction_newSetters 24: Rule 24: Rule_newSetters 24: SBase 24: SBase_newSetters 24: Species 24: L3_Species 24: Species_newSetters 24: SpeciesReference 24: L3_SpeciesReference 24: SpeciesReference_newSetters 24: SpeciesConcentrationRule 24: SpeciesType 24: SpeciesType_newSetters 24: StoichiometryMath 24: Trigger 24: L3Trigger 24: Unit 24: L3_Unit 24: Unit_newSetters 24: UnitDefinition 24: UnitDefinition_newSetters 24: UnitKind 24: CopyAndClone 24: SBMLConvert 24: SBMLConvertStrict 24: SBMLConvertFromL3V2 24: SBMLDocument 24: SBMLError 24: test-data/l1v1-branch.xml 24: test-data/l1v1-units.xml 24: test-data/l1v1-rules.xml 24: test-data/l1v1-minimal.xml 24: test-data/l2v1-assignment.xml 24: test-data/l2v2-newComponents.xml 24: test-data/l2v3-all.xml 24: test-data/l2v4-new.xml 24: test-data/l3v1-new.xml 24: test-data/l2v5-all.xml 24: test-data/l3v2-all.xml 24: test-data/l3v2-no-model.xml 24: test-data/l3v2-empty-lo-1.xml 24: test-data/l3v2-empty-lo-2.xml 24: test-data/l3v2-empty-math.xml 24: test-data/l3v2-empty-event.xml 24: test-data/l3v2-empty-event2.xml 24: ConsistencyChecks 24: ParentObject 24: AncestorObject 24: InternalConsistencyChecks 24: HasReqdAtt 24: HasReqdElements 24: SBMLNamespaces 24: SyntaxChecker 24: SBMLConstructorException 24: SBMLTransforms 24: GetMultipleObjects 24: LevelCompatibility 24: SBaseIdName 24: Generic Attribute Functions 24: 100%: Checks: 1730, Failures: 0, Errors: 0 24/73 Test #24: test_sbml_sbml_run ............................ Passed 2.05 sec test 25 Start 25: test_sbml_units_run 25: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/units/test/test_sbml_units 25: Environment variables: 25: srcdir=/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/units/test 25: Test timeout computed to be: 3000 25: Running suite(s): UtilsUnit 25: UtilsUnitDefinition 25: UnitFormulaFormatter 25: UnitFormulaFormatter1 25: FormulaUnitData 25: FormulaUnitDataMap 25: DerivedUnitDefinition 25: UnitFormulaFormatter2 25: CalcUnitDefinition 25: UnitFormulaFormatter3 25: DerivedUnitDefinitionUndefined 25: 100%: Checks: 178, Failures: 0, Errors: 0 25/73 Test #25: test_sbml_units_run ........................... Passed 0.50 sec test 26 Start 26: test_sbml_util_run 26: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/util/test/test_sbml_util 26: Test timeout computed to be: 3000 26: Running suite(s): memory 26: util 26: List 26: Stack 26: StringBuffer 26: 100%: Checks: 57, Failures: 0, Errors: 0 26/73 Test #26: test_sbml_util_run ............................ Passed 0.03 sec test 27 Start 27: test_sbml_validator_run 27: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/validator/test/test_sbml_validator "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test" 27: Test timeout computed to be: 3000 27: 27: Validator testrunner 27: ==================== 27: using test data from : /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test/test-data 27: using conversion test data from: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/validator/test/test-data-conversion 27: 27: Testing Model Consistency Constraints (20000 - 29999). 27: 100%: Checks: 2292, Failures: 0 27/73 Test #27: test_sbml_validator_run ....................... Passed 0.75 sec test 28 Start 28: test_sbml_xml_run 28: Test command: /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/sbml/xml/test/test_sbml_xml 28: Test timeout computed to be: 3000 28: Running suite(s): XMLAttributes 28: CopyAndClone 28: XMLNamespaces 28: XMLTriple 28: XMLToken 28: XMLToken_newSetters 28: XMLNode 28: XMLNode_newSetters 28: XMLError 28: XMLErrorC 28: XMLErrorLog 28: XMLInputStream 28: XMLOutputStream 28: 28: XMLAttributesC 28: XMLExceptions 28: 100%: Checks: 129, Failures: 0, Errors: 0 28/73 Test #28: test_sbml_xml_run ............................. Passed 0.11 sec test 29 Start 29: test_csharp_bindings 29: Test command: /usr/bin/mono "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/TestRW.exe" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-2/" "-p" "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp" 29: Environment variables: 29: LD_LIBRARY_PATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp: 29: Test timeout computed to be: 3000 29: Testing LibSBML: 5.18.0 29: 29: ........................................................................................................................................................................................................................... 29: All tests passed. 29: 29/73 Test #29: test_csharp_bindings .......................... Passed 0.38 sec test 30 Start 30: test_csharp_bindings_full 30: Test command: /usr/bin/mono "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/TestRunner.exe" "-d" "/builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/test-data" "-l" "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/libsbmlcsP.dll" "-w" "/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp" "-p" "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp" 30: Environment variables: 30: LD_LIBRARY_PATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp: 30: Test timeout computed to be: 3000 30: LibSBML C# Testrunner 30: ===================== 30: Running the tests with: 30: Data Directory: /builddir/build/BUILD/libSBML-5.18.0-Source/src/sbml/test/test-data 30: 30: ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 30: ..................................... 30: 30: Total Number of Tests 1830, failures 0 30: 30: All tests passed. 30: 30/73 Test #30: test_csharp_bindings_full ..................... Passed 1.19 sec test 31 Start 31: test_java_binding 31: Test command: /usr/bin/java "-Xss8m" "-Djava.library.path=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java" "-cp" "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/test" "AutoTestRunner" 31: Environment variables: 31: LD_LIBRARY_PATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java: 31: Test timeout computed to be: 3000 31: ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 31/73 Test #31: test_java_binding ............................. Passed 0.41 sec test 32 Start 32: test_java_printversion 32: Test command: /usr/bin/java "-Xss8m" "-Djava.library.path=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java" "-cp" "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/libsbmlj.jar:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/java/test" "TestPrintVersion" "5.18.0" 32: Test timeout computed to be: 3000 32: . 32/73 Test #32: test_java_printversion ........................ Passed 0.12 sec test 33 Start 33: test_perl_binding 33: Test command: /usr/bin/perl "-I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl" "-I/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl" "-MExtUtils::Command::MM" "-e" "test_harness(0)" "/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/*.t" 33: Environment variables: 33: LD_LIBRARY_PATH=/usr/lib/:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/perl/../..: 33: Test timeout computed to be: 3000 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/01__LoadModule.t ................ ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/02__CreateDocument.t ............ ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/02__ReadFromFile.t .............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/02__ReadFromFileL3.t ............ ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/02__WriteToFile.t ............... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/02__WriteToFileL3.t ............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/03__ChangeValues.t .............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/03__DowncastRule.t .............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/03__DowncastSBase.t ............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/03__DowncastSBaseL3.t ........... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/04__ListOf.t .................... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/04__ListOfL3.t .................. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__AlgebraicRule.t ............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__AssignmentRule.t ............ ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__AssignmentRuleL3.t .......... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__Compartment.t ............... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__CompartmentL3.t ............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__CompartmentVolumeRule.t ..... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__Event.t ..................... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__EventAssignment.t ........... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__EventL3.t ................... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__Formula.t ................... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__FunctionDefinition.t ........ ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__KineticLaw.t ................ ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__KineticLawL3.t .............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__Model.t ..................... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__ModelL3.t ................... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__ModifierSpeciesReference.t .. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__Parameter.t ................. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__ParameterL3.t ............... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__ParameterRule.t ............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__RateRule.t .................. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__SBMLDocument.t .............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/05__SBMLDocumentVerbose.t ....... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/06__TestReadSBML.t .............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/06__TestReadSBMLL3.t ............ ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/06__TestWriteSBML.t ............. ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/06__TestWriteSBMLL3.t ........... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/07__TestCVTerms.t ............... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/07__TestModelHistory.t .......... ok 33: /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok 33: All tests successful. 33: Files=41, Tests=3364, 6 wallclock secs ( 0.27 usr 0.05 sys + 5.22 cusr 0.65 csys = 6.19 CPU) 33: Result: PASS 33/73 Test #33: test_perl_binding ............................. Passed 6.08 sec test 34 Start 34: test_python_binding 34: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python/test.py" "-p" "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python" "-b" "/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/test" 34: Test timeout computed to be: 3000 34: ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 34: ...................................................................................................................................................................................................................................................................................................................................................................................... 34: ---------------------------------------------------------------------- 34: Ran 1819 tests in 0.347s 34: 34: OK 34/73 Test #34: test_python_binding ........................... Passed 1.10 sec test 35 Start 35: test_python_printversion 35: Test command: /usr/bin/python3 "-c" "import libsbml; assert libsbml.getLibSBMLDottedVersion() == '5.18.0'" "-p" "/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python" "-b" "/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/python/test" 35: Environment variables: 35: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 35: Test timeout computed to be: 3000 35/73 Test #35: test_python_printversion ...................... Passed 0.06 sec test 36 Start 36: test_python_addCVTerms 36: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/addCVTerms.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addCVTerms.out.xml" 36: Environment variables: 36: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 36: Test timeout computed to be: 3000 36/73 Test #36: test_python_addCVTerms ........................ Passed 0.07 sec test 37 Start 37: test_python_addingEvidenceCodes_1 37: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/addingEvidenceCodes_1.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_1.out.xml" 37: Environment variables: 37: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 37: Test timeout computed to be: 3000 37/73 Test #37: test_python_addingEvidenceCodes_1 ............. Passed 0.06 sec test 38 Start 38: test_python_addingEvidenceCodes_2 38: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/addingEvidenceCodes_2.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_2.out.xml" 38: Environment variables: 38: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 38: Test timeout computed to be: 3000 38/73 Test #38: test_python_addingEvidenceCodes_2 ............. Passed 0.07 sec test 39 Start 39: test_python_addModelHistory 39: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/addModelHistory.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addModelHistory.out.xml" 39: Environment variables: 39: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 39: Test timeout computed to be: 3000 39: Status for addCreator: succeeded 39: Set created date: succeeded 39: Set modified date: succeeded 39: Set model history: unknown 39/73 Test #39: test_python_addModelHistory ................... Passed 0.06 sec test 40 Start 40: test_python_append_to_note 40: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/append_to_note.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekineticext.xml" "veq" "a new note" "append_to_note.out.xml" 40: Environment variables: 40: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 40: Test timeout computed to be: 3000 40: Body before change: 40: 40:

Some notes

40: 40: 40: Body after change: 40: 40:

Some notes

a new note 40/73 Test #40: test_python_append_to_note .................... Passed 0.06 sec test 41 Start 41: test_python_appendAnnotation 41: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/appendAnnotation.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "appendAnnotation.out.xml" 41: Environment variables: 41: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 41: Test timeout computed to be: 3000 41/73 Test #41: test_python_appendAnnotation .................. Passed 0.06 sec test 42 Start 42: test_python_convertSBML 42: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/convertSBML.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "convertSBML.out.xml" 42: Environment variables: 42: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 42: Test timeout computed to be: 3000 42: Attempting to convert Level 3 Version 1 model to Level 3 Version 2. 42: 42: Conversion completed. 42: 42/73 Test #42: test_python_convertSBML ....................... Passed 0.07 sec test 43 Start 43: test_python_createExampleSBML 43: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/createExampleSBML.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createExampleSBMLy.out.xml" 43: Environment variables: 43: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 43: Test timeout computed to be: 3000 43: line 1: (99505 [Warning]) In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. 43: The units of the expression 'f(S1) * compartmentOne / t' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate. 43: 43: Wrote file 'enzymaticreaction.xml' 43: Wrote file 'units.xml' 43: 43: Notice: encountered 1 validation warning in model 'functionExample'. 43: 43: Wrote file 'functiondef.xml' 43/73 Test #43: test_python_createExampleSBML ................. Passed 0.08 sec test 44 Start 44: test_python_createSimpleModel 44: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/createSimpleModel.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createSimpleModel.out.xml" 44: Environment variables: 44: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 44: Test timeout computed to be: 3000 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: 44: k 44: s1 44: c1 44: 44: 44: 44: 44: 44: 44: 44: 44/73 Test #44: test_python_createSimpleModel ................. Passed 0.06 sec test 45 Start 45: test_python_echoSBML 45: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/echoSBML.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "echoSBML.out.xml" 45: Environment variables: 45: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 45: Test timeout computed to be: 3000 45: [OK] Echoed /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml 45/73 Test #45: test_python_echoSBML .......................... Passed 0.06 sec test 46 Start 46: test_python_evaluateCustomMath 46: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/evaluateCustomMath.py" "2*3+4" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 46: Environment variables: 46: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 46: Test timeout computed to be: 3000 46: 2*3+4 = 10.0 46/73 Test #46: test_python_evaluateCustomMath ................ Passed 0.06 sec test 47 Start 47: test_python_getAllElementsWithNotes 47: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/getAllElementsWithNotes.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 47: Environment variables: 47: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 47: Test timeout computed to be: 3000 47: 47: filename: /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 47: read time (ms): 0.93994140625 47: searching ......: 47: search time (ms): 0.054443359375 47: elements with notes: 0 47/73 Test #47: test_python_getAllElementsWithNotes ........... Passed 0.06 sec test 48 Start 48: test_python_inlineInitialAssignments 48: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/inlineInitialAssignments.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "inlineInitialAssignments.out.xml" 48: Environment variables: 48: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 48: Test timeout computed to be: 3000 48/73 Test #48: test_python_inlineInitialAssignments .......... Passed 0.06 sec test 49 Start 49: test_python_printAnnotation 49: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/printAnnotation.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 49: Environment variables: 49: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 49: Test timeout computed to be: 3000 49: filename: /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 49: 49/73 Test #49: test_python_printAnnotation ................... Passed 0.06 sec test 50 Start 50: test_python_printMath 50: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/printMath.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 50: Environment variables: 50: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 50: Test timeout computed to be: 3000 50: 50: Reaction 1, formula: comp * (kon * E * S - koff * ES) 50: 50: Reaction 2, formula: comp * kcat * ES 50: 50: 50: 50/73 Test #50: test_python_printMath ......................... Passed 0.06 sec test 51 Start 51: test_python_printRegisteredPackages 51: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/printRegisteredPackages.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "printRegisteredPackages.out.xml" 51: Environment variables: 51: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 51: Test timeout computed to be: 3000 51: This version of LibSBML: 5.18.0 includes: 51: 51: comp 51: fbc 51: groups 51: layout 51: render 51: l3v2extendedmath 51: multi 51: qual 51: 51: 51/73 Test #51: test_python_printRegisteredPackages ........... Passed 0.06 sec test 52 Start 52: test_python_printSBML 52: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/printSBML.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 52: Environment variables: 52: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 52: Test timeout computed to be: 3000 52: 52: File: /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml (Level 3, version 1) 52: id: (empty) 52: functionDefinitions: 0 52: unitDefinitions: 2 52: compartmentTypes: 0 52: specieTypes: 0 52: compartments: 1 52: species: 4 52: parameters: 0 52: initialAssignments: 0 52: rules: 0 52: constraints: 0 52: reactions: 2 52: events: 0 52: 52: 52/73 Test #52: test_python_printSBML ......................... Passed 0.06 sec test 53 Start 53: test_python_printsupported 53: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/printsupported.py" 53: Environment variables: 53: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 53: Test timeout computed to be: 3000 53: Supported by LibSBML 5.18.0 53: 53: SBML Level: 1 Version: 1 53: SBML Level: 1 Version: 2 53: SBML Level: 2 Version: 1 53: SBML Level: 2 Version: 2 53: SBML Level: 2 Version: 3 53: SBML Level: 2 Version: 4 53: SBML Level: 2 Version: 5 53: SBML Level: 3 Version: 1 53: SBML Level: 3 Version: 2 53: 53/73 Test #53: test_python_printsupported .................... Passed 0.06 sec test 54 Start 54: test_python_printUnits 54: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/printUnits.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 54: Environment variables: 54: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 54: Test timeout computed to be: 3000 54: Species 0: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 54: Species 1: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 54: Species 2: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 54: Species 3: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 54: Compartment 0: litre (exponent = 1, multiplier = 1, scale = 0) 54: Reaction 0: 54: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 54: undeclared units: no 54: Reaction 1: 54: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 54: undeclared units: no 54/73 Test #54: test_python_printUnits ........................ Passed 0.07 sec test 55 Start 55: test_python_promoteParameters 55: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/promoteParameters.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "promoteParameters.out.xml" 55: Environment variables: 55: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 55: Test timeout computed to be: 3000 55: [OK] wrote promoteParameters.out.xml 55/73 Test #55: test_python_promoteParameters ................. Passed 0.06 sec test 56 Start 56: test_python_readSBML 56: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/readSBML.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 56: Environment variables: 56: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 56: Test timeout computed to be: 3000 56: 56: filename: /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 56: file size: 3930 56: read time (ms): 0.0009859830000000028 56: validation error(s): 0 56: 56/73 Test #56: test_python_readSBML .......................... Passed 0.06 sec test 57 Start 57: test_python_replaceOneFD 57: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/replaceOneFD.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/functiondef.xml" "f" "reaction_1" "replaceOneFD.out.xml" 57: Environment variables: 57: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 57: Test timeout computed to be: 3000 57/73 Test #57: test_python_replaceOneFD ...................... Passed 0.06 sec test 58 Start 58: test_python_setIdFromNames 58: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/setIdFromNames.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "setIdFromNames.out.xml" 58: Environment variables: 58: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 58: Test timeout computed to be: 3000 58: 58: filename: /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 58: read time (ms): 0.932861328125 58: rename time (ms): 0.072509765625 58: write time (ms): 0.5146484375 58: 58/73 Test #58: test_python_setIdFromNames .................... Passed 0.06 sec test 59 Start 59: test_python_unsetAnnotation 59: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/unsetAnnotation.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetAnnotation.out.xml" 59: Environment variables: 59: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 59: Test timeout computed to be: 3000 59/73 Test #59: test_python_unsetAnnotation ................... Passed 0.07 sec test 60 Start 60: test_python_unsetNotes 60: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/unsetNotes.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetNotes.out.xml" 60: Environment variables: 60: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 60: Test timeout computed to be: 3000 60/73 Test #60: test_python_unsetNotes ........................ Passed 0.06 sec test 61 Start 61: test_python_validateSBML 61: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/validateSBML.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 61: Environment variables: 61: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 61: Test timeout computed to be: 3000 61: --------------------------------------------------------------------------- 61: filename : /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 61: file size (byte) : 3930 61: read time (ms) : 0.997066 61: c-check time (ms) : 2.107620 61: validation error(s) : 0 61: (consistency error(s)): 0 61: validation warning(s) : 0 61: (consistency warning(s)): 0 61: --------------------------------------------------------------------------- 61: Validated 1 files, 1 valid files, 0 invalid files 61/73 Test #61: test_python_validateSBML ...................... Passed 0.07 sec test 62 Start 62: test_python_stringInput 62: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/stringInput.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 62: Environment variables: 62: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 62: Test timeout computed to be: 3000 62: filename: /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 62: 62: 62: 62/73 Test #62: test_python_stringInput ....................... Passed 0.06 sec test 63 Start 63: test_python_stripPackage 63: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/stripPackage.py" "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/fbc/fbc_example1.xml" "fbc" "stripPackage.out.xml" 63: Environment variables: 63: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 63: Test timeout computed to be: 3000 63: [OK] stripped package 'fbc' from /builddir/build/BUILD/libSBML-5.18.0-Source/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml 63/73 Test #63: test_python_stripPackage ...................... Passed 0.06 sec test 64 Start 64: test_python_fbc_fbc_example1 64: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/fbc/fbc_example1.py" 64: Environment variables: 64: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 64: Test timeout computed to be: 3000 64/73 Test #64: test_python_fbc_fbc_example1 .................. Passed 0.07 sec test 65 Start 65: test_python_groups_groups_example1 65: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/groups/groups_example1.py" 65: Environment variables: 65: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 65: Test timeout computed to be: 3000 65/73 Test #65: test_python_groups_groups_example1 ............ Passed 0.06 sec test 66 Start 66: test_python_layout_example1_L3 66: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/layout/example1-L3.py" 66: Environment variables: 66: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 66: Test timeout computed to be: 3000 66/73 Test #66: test_python_layout_example1_L3 ................ Passed 0.07 sec test 67 Start 67: test_python_layout_example1 67: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/layout/example1.py" 67: Environment variables: 67: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 67: Test timeout computed to be: 3000 67/73 Test #67: test_python_layout_example1 ................... Passed 0.07 sec test 68 Start 68: test_python_multi_multi_example1 68: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/multi/multi_example1.py" 68: Environment variables: 68: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 68: Test timeout computed to be: 3000 68/73 Test #68: test_python_multi_multi_example1 .............. Passed 0.06 sec test 69 Start 69: test_python_multi_multi_example2 69: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/multi/multi_example2.py" 69: Environment variables: 69: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 69: Test timeout computed to be: 3000 69/73 Test #69: test_python_multi_multi_example2 .............. Passed 0.08 sec test 70 Start 70: test_python_multi_multi_example3 70: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/multi/multi_example3.py" 70: Environment variables: 70: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 70: Test timeout computed to be: 3000 70/73 Test #70: test_python_multi_multi_example3 .............. Passed 0.06 sec test 71 Start 71: test_python_multi_printMulti 71: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/multi/printMulti.py" 71: Environment variables: 71: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 71: Test timeout computed to be: 3000 71: usage: printMulti sbml-file 71/73 Test #71: test_python_multi_printMulti .................. Passed 0.06 sec test 72 Start 72: test_python_qual_qual_example1 72: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.18.0-Source/examples/python/qual/qual_example1.py" 72: Environment variables: 72: PYTHONPATH=/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/python: 72: Test timeout computed to be: 3000 72/73 Test #72: test_python_qual_qual_example1 ................ Passed 0.06 sec test 73 Start 73: test_r_binding 73: Test command: /usr/bin/R "--slave" "-e" ".libPaths('temp');library(libSBML);cat(getLibSBMLDottedVersion() == '5.18.0')" 73: Test timeout computed to be: 3000 73: 73: Attaching package: 'libSBML' 73: 73: The following object is masked from 'package:base': 73: 73: flush 73: 73: TRUE 73/73 Test #73: test_r_binding ................................ Passed 3.74 sec The following tests passed: test_comp_extensions_run test_comp_sbase_run test_comp_util_run test_comp_validator_run test_sbml_package_fbc_run test_fbc_validator_run test_extension_package_groups_run test_groups_validator_run test_l3v2extendedmath_validator_run test_extension_package_l3v2extendedmath_run test_sbml_package_layout_run test_layout_validator_run test_sbml_package_multi_run test_multi_validator_run test_extension_package_qual_run test_sbml_package_qual_run test_qual_validator_run test_sbml_package_render_run test_render_validator_run test_sbml_annotation_run test_sbml_conversion_run test_sbml_extension_run test_sbml_math_run test_sbml_sbml_run test_sbml_units_run test_sbml_util_run test_sbml_validator_run test_sbml_xml_run test_csharp_bindings test_csharp_bindings_full test_java_binding test_java_printversion test_perl_binding test_python_binding test_python_printversion test_python_addCVTerms test_python_addingEvidenceCodes_1 test_python_addingEvidenceCodes_2 test_python_addModelHistory test_python_append_to_note test_python_appendAnnotation test_python_convertSBML test_python_createExampleSBML test_python_createSimpleModel test_python_echoSBML test_python_evaluateCustomMath test_python_getAllElementsWithNotes test_python_inlineInitialAssignments test_python_printAnnotation test_python_printMath test_python_printRegisteredPackages test_python_printSBML test_python_printsupported test_python_printUnits test_python_promoteParameters test_python_readSBML test_python_replaceOneFD test_python_setIdFromNames test_python_unsetAnnotation test_python_unsetNotes test_python_validateSBML test_python_stringInput test_python_stripPackage test_python_fbc_fbc_example1 test_python_groups_groups_example1 test_python_layout_example1_L3 test_python_layout_example1 test_python_multi_multi_example1 test_python_multi_multi_example2 test_python_multi_multi_example3 test_python_multi_printMulti test_python_qual_qual_example1 test_r_binding 100% tests passed, 0 tests failed out of 73 Total Test time (real) = 24.59 sec ~/build/BUILD/libSBML-5.18.0-Source + popd + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsbml-5.18.0-18.fc33.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VXr8p6 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + DOCDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/doc/libsbml + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/doc/libsbml + cp -pr AUTHORS.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/doc/libsbml + cp -pr README-extension.txt README.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/doc/libsbml + cp -pr NEWS.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/doc/libsbml + cp -pr OLD_NEWS.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/doc/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Lg0MP8 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsbml = 5.18.0-18.fc33 libsbml(x86-64) = 5.18.0-18.fc33 libsbml.so.5()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: python2-libsbml < 5.18 Processing files: libsbml-devel-5.18.0-18.fc33.x86_64 Provides: libsbml-devel = 5.18.0-18.fc33 libsbml-devel(x86-64) = 5.18.0-18.fc33 libsbml-static = 5.18.0-18.fc33 pkgconfig(libsbml) = 5.18.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libsbml.so.5()(64bit) pkgconfig(libxml-2.0) >= 2.6.22 Processing files: python3-libsbml-5.18.0-18.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.i23oS8 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsbml = 5.18.0-18.fc33 python3-libsbml = 5.18.0-18.fc33 python3-libsbml(x86-64) = 5.18.0-18.fc33 python3.9-libsbml = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) python(abi) = 3.9 rtld(GNU_HASH) Obsoletes: python-libsbml < 5.18.0-18.fc33 Processing files: perl-LibSBML-5.18.0-18.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Hupcz8 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: perl(LibSBML) perl(LibSBML::ASTBasePlugin) perl(LibSBML::ASTNode) perl(LibSBML::ASTNodeList) perl(LibSBML::ASTNodeValues_t) perl(LibSBML::AlgebraicRule) perl(LibSBML::AssignmentRule) perl(LibSBML::Association) perl(LibSBML::BindingSiteSpeciesType) perl(LibSBML::BoundingBox) perl(LibSBML::CVTerm) perl(LibSBML::CVTermList) perl(LibSBML::Callback) perl(LibSBML::CallbackRegistry) perl(LibSBML::CobraToFbcConverter) perl(LibSBML::ColorDefinition) perl(LibSBML::CompBase) perl(LibSBML::CompExtension) perl(LibSBML::CompFlatteningConverter) perl(LibSBML::CompModelPlugin) perl(LibSBML::CompPkgNamespaces) perl(LibSBML::CompSBMLDocumentPlugin) perl(LibSBML::CompSBasePlugin) perl(LibSBML::Compartment) perl(LibSBML::CompartmentGlyph) perl(LibSBML::CompartmentReference) perl(LibSBML::CompartmentType) perl(LibSBML::Constraint) perl(LibSBML::ConversionOption) perl(LibSBML::ConversionProperties) perl(LibSBML::CubicBezier) perl(LibSBML::Curve) perl(LibSBML::Date) perl(LibSBML::DateList) perl(LibSBML::DefaultTerm) perl(LibSBML::DefaultValues) perl(LibSBML::DefinitionURLRegistry) perl(LibSBML::Delay) perl(LibSBML::Deletion) perl(LibSBML::Dimensions) perl(LibSBML::ElementFilter) perl(LibSBML::Ellipse) perl(LibSBML::Event) perl(LibSBML::EventAssignment) perl(LibSBML::ExternalModelDefinition) perl(LibSBML::FbcAnd) perl(LibSBML::FbcAssociation) perl(LibSBML::FbcExtension) perl(LibSBML::FbcModelPlugin) perl(LibSBML::FbcOr) perl(LibSBML::FbcPkgNamespaces) perl(LibSBML::FbcReactionPlugin) perl(LibSBML::FbcSBMLDocumentPlugin) perl(LibSBML::FbcSpeciesPlugin) perl(LibSBML::FbcToCobraConverter) perl(LibSBML::FbcV1ToV2Converter) perl(LibSBML::FbcV2ToV1Converter) perl(LibSBML::FluxBound) perl(LibSBML::FluxObjective) perl(LibSBML::FunctionDefinition) perl(LibSBML::FunctionTerm) perl(LibSBML::GeneAssociation) perl(LibSBML::GeneProduct) perl(LibSBML::GeneProductAssociation) perl(LibSBML::GeneProductRef) perl(LibSBML::GeneralGlyph) perl(LibSBML::GlobalRenderInformation) perl(LibSBML::GlobalStyle) perl(LibSBML::GradientBase) perl(LibSBML::GradientStop) perl(LibSBML::GraphicalObject) perl(LibSBML::GraphicalPrimitive1D) perl(LibSBML::GraphicalPrimitive2D) perl(LibSBML::Group) perl(LibSBML::GroupsExtension) perl(LibSBML::GroupsModelPlugin) perl(LibSBML::GroupsPkgNamespaces) perl(LibSBML::ISBMLExtensionNamespaces) perl(LibSBML::IdList) perl(LibSBML::IdentifierTransformer) perl(LibSBML::Image) perl(LibSBML::InSpeciesTypeBond) perl(LibSBML::InitialAssignment) perl(LibSBML::Input) perl(LibSBML::IntraSpeciesReaction) perl(LibSBML::KineticLaw) perl(LibSBML::L3ParserSettings) perl(LibSBML::L3v2extendedmathASTPlugin) perl(LibSBML::L3v2extendedmathExtension) perl(LibSBML::L3v2extendedmathPkgNamespaces) perl(LibSBML::L3v2extendedmathSBMLDocumentPlugin) perl(LibSBML::Layout) perl(LibSBML::LayoutExtension) perl(LibSBML::LayoutModelPlugin) perl(LibSBML::LayoutPkgNamespaces) perl(LibSBML::LayoutSpeciesReferencePlugin) perl(LibSBML::LineEnding) perl(LibSBML::LineSegment) perl(LibSBML::LinearGradient) perl(LibSBML::ListOf) perl(LibSBML::ListOfColorDefinitions) perl(LibSBML::ListOfCompartmentGlyphs) perl(LibSBML::ListOfCompartmentReferences) perl(LibSBML::ListOfCompartmentTypes) perl(LibSBML::ListOfCompartments) perl(LibSBML::ListOfConstraints) perl(LibSBML::ListOfCurveElements) perl(LibSBML::ListOfDeletions) perl(LibSBML::ListOfDrawables) perl(LibSBML::ListOfEventAssignments) perl(LibSBML::ListOfEvents) perl(LibSBML::ListOfExternalModelDefinitions) perl(LibSBML::ListOfFbcAssociations) perl(LibSBML::ListOfFluxBounds) perl(LibSBML::ListOfFluxObjectives) perl(LibSBML::ListOfFunctionDefinitions) perl(LibSBML::ListOfFunctionTerms) perl(LibSBML::ListOfGeneAssociations) perl(LibSBML::ListOfGeneProducts) perl(LibSBML::ListOfGlobalRenderInformation) perl(LibSBML::ListOfGlobalStyles) perl(LibSBML::ListOfGradientDefinitions) perl(LibSBML::ListOfGradientStops) perl(LibSBML::ListOfGraphicalObjects) perl(LibSBML::ListOfGroups) perl(LibSBML::ListOfInSpeciesTypeBonds) perl(LibSBML::ListOfInitialAssignments) perl(LibSBML::ListOfInputs) perl(LibSBML::ListOfLayouts) perl(LibSBML::ListOfLineEndings) perl(LibSBML::ListOfLineSegments) perl(LibSBML::ListOfLocalParameters) perl(LibSBML::ListOfLocalRenderInformation) perl(LibSBML::ListOfLocalStyles) perl(LibSBML::ListOfMembers) perl(LibSBML::ListOfModelDefinitions) perl(LibSBML::ListOfMultiSpeciesTypes) perl(LibSBML::ListOfObjectives) perl(LibSBML::ListOfOutputs) perl(LibSBML::ListOfOutwardBindingSites) perl(LibSBML::ListOfParameters) perl(LibSBML::ListOfPorts) perl(LibSBML::ListOfPossibleSpeciesFeatureValues) perl(LibSBML::ListOfQualitativeSpecies) perl(LibSBML::ListOfReactionGlyphs) perl(LibSBML::ListOfReactions) perl(LibSBML::ListOfReferenceGlyphs) perl(LibSBML::ListOfReplacedElements) perl(LibSBML::ListOfRules) perl(LibSBML::ListOfSpecies) perl(LibSBML::ListOfSpeciesFeatureTypes) perl(LibSBML::ListOfSpeciesFeatureValues) perl(LibSBML::ListOfSpeciesFeatures) perl(LibSBML::ListOfSpeciesGlyphs) perl(LibSBML::ListOfSpeciesReferenceGlyphs) perl(LibSBML::ListOfSpeciesReferences) perl(LibSBML::ListOfSpeciesTypeComponentIndexes) perl(LibSBML::ListOfSpeciesTypeComponentMapInProducts) perl(LibSBML::ListOfSpeciesTypeInstances) perl(LibSBML::ListOfSpeciesTypes) perl(LibSBML::ListOfSubmodels) perl(LibSBML::ListOfTextGlyphs) perl(LibSBML::ListOfTransitions) perl(LibSBML::ListOfUnitDefinitions) perl(LibSBML::ListOfUnits) perl(LibSBML::LocalParameter) perl(LibSBML::LocalRenderInformation) perl(LibSBML::LocalStyle) perl(LibSBML::MathFilter) perl(LibSBML::Member) perl(LibSBML::Model) perl(LibSBML::ModelCreator) perl(LibSBML::ModelCreatorList) perl(LibSBML::ModelDefinition) perl(LibSBML::ModelHistory) perl(LibSBML::ModifierSpeciesReference) perl(LibSBML::MultiASTPlugin) perl(LibSBML::MultiCompartmentPlugin) perl(LibSBML::MultiExtension) perl(LibSBML::MultiListOfReactionsPlugin) perl(LibSBML::MultiModelPlugin) perl(LibSBML::MultiPkgNamespaces) perl(LibSBML::MultiSBMLDocumentPlugin) perl(LibSBML::MultiSimpleSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesPlugin) perl(LibSBML::MultiSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesType) perl(LibSBML::OFStream) perl(LibSBML::OStream) perl(LibSBML::OStringStream) perl(LibSBML::Objective) perl(LibSBML::Output) perl(LibSBML::OutwardBindingSite) perl(LibSBML::Parameter) perl(LibSBML::Point) perl(LibSBML::Polygon) perl(LibSBML::Port) perl(LibSBML::PossibleSpeciesFeatureValue) perl(LibSBML::Priority) perl(LibSBML::QualExtension) perl(LibSBML::QualModelPlugin) perl(LibSBML::QualPkgNamespaces) perl(LibSBML::QualitativeSpecies) perl(LibSBML::RDFAnnotationParser) perl(LibSBML::RadialGradient) perl(LibSBML::RateRule) perl(LibSBML::Reaction) perl(LibSBML::ReactionGlyph) perl(LibSBML::Rectangle) perl(LibSBML::ReferenceGlyph) perl(LibSBML::RelAbsVector) perl(LibSBML::RenderCubicBezier) perl(LibSBML::RenderCurve) perl(LibSBML::RenderExtension) perl(LibSBML::RenderGraphicalObjectPlugin) perl(LibSBML::RenderGroup) perl(LibSBML::RenderInformationBase) perl(LibSBML::RenderLayoutPlugin) perl(LibSBML::RenderListOfLayoutsPlugin) perl(LibSBML::RenderPkgNamespaces) perl(LibSBML::RenderPoint) perl(LibSBML::ReplacedBy) perl(LibSBML::ReplacedElement) perl(LibSBML::Replacing) perl(LibSBML::Rule) perl(LibSBML::SBMLConstructorException) perl(LibSBML::SBMLConverter) perl(LibSBML::SBMLConverterRegistry) perl(LibSBML::SBMLDocument) perl(LibSBML::SBMLDocumentPlugin) perl(LibSBML::SBMLError) perl(LibSBML::SBMLErrorLog) perl(LibSBML::SBMLExtension) perl(LibSBML::SBMLExtensionException) perl(LibSBML::SBMLExtensionRegistry) perl(LibSBML::SBMLExternalValidator) perl(LibSBML::SBMLFileResolver) perl(LibSBML::SBMLFunctionDefinitionConverter) perl(LibSBML::SBMLIdConverter) perl(LibSBML::SBMLInferUnitsConverter) perl(LibSBML::SBMLInitialAssignmentConverter) perl(LibSBML::SBMLLevel1Version1Converter) perl(LibSBML::SBMLLevelVersionConverter) perl(LibSBML::SBMLLocalParameterConverter) perl(LibSBML::SBMLNamespaces) perl(LibSBML::SBMLNamespacesList) perl(LibSBML::SBMLReactionConverter) perl(LibSBML::SBMLReader) perl(LibSBML::SBMLResolver) perl(LibSBML::SBMLResolverRegistry) perl(LibSBML::SBMLRuleConverter) perl(LibSBML::SBMLStripPackageConverter) perl(LibSBML::SBMLTransforms) perl(LibSBML::SBMLUnitsConverter) perl(LibSBML::SBMLUri) perl(LibSBML::SBMLValidator) perl(LibSBML::SBMLWriter) perl(LibSBML::SBO) perl(LibSBML::SBase) perl(LibSBML::SBaseExtensionPoint) perl(LibSBML::SBaseList) perl(LibSBML::SBasePlugin) perl(LibSBML::SBaseRef) perl(LibSBML::SimpleSpeciesReference) perl(LibSBML::Species) perl(LibSBML::SpeciesFeature) perl(LibSBML::SpeciesFeatureType) perl(LibSBML::SpeciesFeatureValue) perl(LibSBML::SpeciesGlyph) perl(LibSBML::SpeciesReference) perl(LibSBML::SpeciesReferenceGlyph) perl(LibSBML::SpeciesType) perl(LibSBML::SpeciesTypeComponentIndex) perl(LibSBML::SpeciesTypeComponentMapInProduct) perl(LibSBML::SpeciesTypeInstance) perl(LibSBML::StoichiometryMath) perl(LibSBML::StringSet) perl(LibSBML::Style) perl(LibSBML::SubListOfSpeciesFeatures) perl(LibSBML::Submodel) perl(LibSBML::SyntaxChecker) perl(LibSBML::Text) perl(LibSBML::TextGlyph) perl(LibSBML::Transformation) perl(LibSBML::Transformation2D) perl(LibSBML::Transition) perl(LibSBML::Trigger) perl(LibSBML::Unit) perl(LibSBML::UnitDefinition) perl(LibSBML::XMLAttributes) perl(LibSBML::XMLConstructorException) perl(LibSBML::XMLError) perl(LibSBML::XMLErrorLog) perl(LibSBML::XMLInputStream) perl(LibSBML::XMLNamespaces) perl(LibSBML::XMLNode) perl(LibSBML::XMLOutputStream) perl(LibSBML::XMLOwningOutputFileStream) perl(LibSBML::XMLOwningOutputStringStream) perl(LibSBML::XMLToken) perl(LibSBML::XMLTriple) perl(LibSBML::double_array) perl(LibSBML::int_array) perl(LibSBMLc) perl-LibSBML = 5.18.0-18.fc33 perl-LibSBML(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libperl.so.5.32()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) rtld(GNU_HASH) Processing files: ruby-SBML-5.18.0-18.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.F0lJZ9 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: libSBML.so()(64bit) ruby(SBML) = 5.18.0 ruby-SBML = 5.18.0-18.fc33 ruby-SBML(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libruby.so.2.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: java-libsbml-5.18.0-18.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.f8MP25 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: java-libsbml = 5.18.0-18.fc33 java-libsbml(x86-64) = 5.18.0-18.fc33 libsbmlj.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-libSBML-5.18.0-18.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Iwpc78 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: R(libSBML) = 5.18.0 R-libSBML = 5.18.0-18.fc33 R-libSBML(x86-64) = 5.18.0-18.fc33 libSBML.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.0 R(methods) R-core >= 1.8.0 libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsbml-sharp-5.18.0-18.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ddX7ma + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr COPYING.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + cp -pr LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsbml-sharp = 5.18.0-18.fc33 libsbml-sharp(x86-64) = 5.18.0-18.fc33 libsbmlcs.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsbml-debugsource-5.18.0-18.fc33.x86_64 Provides: libsbml-debugsource = 5.18.0-18.fc33 libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsbml-debuginfo-5.18.0-18.fc33.x86_64 Provides: debuginfo(build-id) = 830191c2b305f6ee73c66a99c527639664d966af libsbml-debuginfo = 5.18.0-18.fc33 libsbml-debuginfo(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Processing files: python3-libsbml-debuginfo-5.18.0-18.fc33.x86_64 Provides: debuginfo(build-id) = b80d23459528f04b0fea8718c15a43bbc8a83ede python-libsbml-debuginfo = 5.18.0-18.fc33 python3-libsbml-debuginfo = 5.18.0-18.fc33 python3-libsbml-debuginfo(x86-64) = 5.18.0-18.fc33 python3.9-libsbml-debuginfo = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Processing files: perl-LibSBML-debuginfo-5.18.0-18.fc33.x86_64 Provides: debuginfo(build-id) = f21d16637ee076d9424d3766ca4da42a09e1b657 perl-LibSBML-debuginfo = 5.18.0-18.fc33 perl-LibSBML-debuginfo(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Processing files: ruby-SBML-debuginfo-5.18.0-18.fc33.x86_64 Provides: debuginfo(build-id) = 5206fe7c563a29a3e2377626d6ddda6ad82ccbd3 ruby-SBML-debuginfo = 5.18.0-18.fc33 ruby-SBML-debuginfo(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Processing files: java-libsbml-debuginfo-5.18.0-18.fc33.x86_64 Provides: debuginfo(build-id) = 283a95cb33cdccda79ce1b89df997dcdf35f1875 java-libsbml-debuginfo = 5.18.0-18.fc33 java-libsbml-debuginfo(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Processing files: R-libSBML-debuginfo-5.18.0-18.fc33.x86_64 Provides: R-libSBML-debuginfo = 5.18.0-18.fc33 R-libSBML-debuginfo(x86-64) = 5.18.0-18.fc33 debuginfo(build-id) = 5d62f6a2e05369e7cd58b0d50cd5a73da0d571a7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Processing files: libsbml-sharp-debuginfo-5.18.0-18.fc33.x86_64 Provides: debuginfo(build-id) = 38cde387726feb120fb04ed97b6c893eb0d1e146 libsbml-sharp-debuginfo = 5.18.0-18.fc33 libsbml-sharp-debuginfo(x86-64) = 5.18.0-18.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(x86-64) = 5.18.0-18.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 Wrote: /builddir/build/RPMS/libsbml-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/java-libsbml-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-sharp-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/R-libSBML-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-devel-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-debugsource-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-debuginfo-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/libsbml-sharp-debuginfo-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/R-libSBML-debuginfo-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/java-libsbml-debuginfo-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-debuginfo-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-debuginfo-5.18.0-18.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-debuginfo-5.18.0-18.fc33.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Bbts79 + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.18.0-Source + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsbml-5.18.0-18.fc33.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0