Mock Version: 1.4.16 Mock Version: 1.4.16 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/f31-build-16726716-1209593/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target ppc64le --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False BUILDSTDERR: sh: /usr/bin/perl: No such file or directory Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1561939200 Wrote: /builddir/build/SRPMS/bionetgen-2.5.0-3.fc31.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/bionetgen.spec'], chrootPath='/var/lib/mock/f31-build-16726716-1209593/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target ppc64le --nodeps /builddir/build/SPECS/bionetgen.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1561939200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.gM8Rka + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bionetgen-2.5.0 + /usr/bin/mkdir -p bionetgen-2.5.0 + cd bionetgen-2.5.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/bionetgen-BioNetGen-2.5.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd bionetgen-BioNetGen-2.5.0 + rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip + tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3 + popd + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 ~/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0 ~/build/BUILD/bionetgen-2.5.0 cvode-2.6.0/README cvode-2.6.0/INSTALL_NOTES cvode-2.6.0/LICENSE cvode-2.6.0/Makefile.in cvode-2.6.0/configure.ac cvode-2.6.0/acinclude.m4 cvode-2.6.0/config.hin cvode-2.6.0/configure cvode-2.6.0/CMakeLists.txt cvode-2.6.0/config/config.guess cvode-2.6.0/config/config.sub cvode-2.6.0/config/install-sh cvode-2.6.0/config/mkinstalldirs cvode-2.6.0/config/rminstalldirs cvode-2.6.0/config/ltmain.sh cvode-2.6.0/config/mod_c.m4 cvode-2.6.0/config/mod_fortran.m4 cvode-2.6.0/config/cust_general.m4 cvode-2.6.0/config/CheckFortranFunctionExists.cmake cvode-2.6.0/config/SundialsFortran.cmake cvode-2.6.0/config/SundialsLapack.cmake cvode-2.6.0/config/SundialsMPIC.cmake cvode-2.6.0/config/SundialsMPIF.cmake cvode-2.6.0/config/FindLAPACK.cmake cvode-2.6.0/config/FindBLAS.cmake cvode-2.6.0/config/FindMPI.cmake cvode-2.6.0/bin/sundials-config.in cvode-2.6.0/bin/fortran-update.in cvode-2.6.0/bin/makefile-update.in cvode-2.6.0/include/sundials/sundials_config.in cvode-2.6.0/include/sundials/sundials_types.h cvode-2.6.0/include/sundials/sundials_math.h cvode-2.6.0/include/sundials/sundials_nvector.h cvode-2.6.0/include/sundials/sundials_fnvector.h cvode-2.6.0/include/sundials/sundials_dense.h cvode-2.6.0/include/sundials/sundials_direct.h cvode-2.6.0/include/sundials/sundials_band.h cvode-2.6.0/include/sundials/sundials_lapack.h cvode-2.6.0/include/sundials/sundials_spgmr.h cvode-2.6.0/include/sundials/sundials_spbcgs.h cvode-2.6.0/include/sundials/sundials_sptfqmr.h cvode-2.6.0/include/sundials/sundials_iterative.h cvode-2.6.0/include/nvector/nvector_serial.h cvode-2.6.0/include/nvector/nvector_parallel.h cvode-2.6.0/src/sundials/README cvode-2.6.0/src/sundials/Makefile.in cvode-2.6.0/src/sundials/CMakeLists.txt cvode-2.6.0/src/sundials/sundials_math.c cvode-2.6.0/src/sundials/sundials_nvector.c cvode-2.6.0/src/sundials/sundials_dense.c cvode-2.6.0/src/sundials/sundials_direct.c cvode-2.6.0/src/sundials/sundials_band.c cvode-2.6.0/src/sundials/sundials_spgmr.c cvode-2.6.0/src/sundials/sundials_spbcgs.c cvode-2.6.0/src/sundials/sundials_sptfqmr.c cvode-2.6.0/src/sundials/sundials_iterative.c cvode-2.6.0/src/nvec_ser/README cvode-2.6.0/src/nvec_ser/Makefile.in cvode-2.6.0/src/nvec_ser/CMakeLists.txt cvode-2.6.0/src/nvec_ser/fnvector_serial.h cvode-2.6.0/src/nvec_ser/nvector_serial.c cvode-2.6.0/src/nvec_ser/fnvector_serial.c cvode-2.6.0/src/nvec_par/README cvode-2.6.0/src/nvec_par/Makefile.in cvode-2.6.0/src/nvec_par/CMakeLists.txt cvode-2.6.0/src/nvec_par/fnvector_parallel.h cvode-2.6.0/src/nvec_par/nvector_parallel.c cvode-2.6.0/src/nvec_par/fnvector_parallel.c cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in cvode-2.6.0/examples/templates/makefile_serial_C_ex.in cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in cvode-2.6.0/doc/cvode/cv_guide.pdf cvode-2.6.0/doc/cvode/cv_examples.pdf cvode-2.6.0/include/cvode/cvode.h cvode-2.6.0/include/cvode/cvode_direct.h cvode-2.6.0/include/cvode/cvode_dense.h cvode-2.6.0/include/cvode/cvode_band.h cvode-2.6.0/include/cvode/cvode_lapack.h cvode-2.6.0/include/cvode/cvode_diag.h cvode-2.6.0/include/cvode/cvode_spgmr.h cvode-2.6.0/include/cvode/cvode_spbcgs.h cvode-2.6.0/include/cvode/cvode_sptfqmr.h cvode-2.6.0/include/cvode/cvode_spils.h cvode-2.6.0/include/cvode/cvode_bandpre.h cvode-2.6.0/include/cvode/cvode_bbdpre.h cvode-2.6.0/src/cvode/LICENSE cvode-2.6.0/src/cvode/README cvode-2.6.0/src/cvode/Makefile.in cvode-2.6.0/src/cvode/CMakeLists.txt cvode-2.6.0/src/cvode/cvode.c cvode-2.6.0/src/cvode/cvode_io.c cvode-2.6.0/src/cvode/cvode_direct.c cvode-2.6.0/src/cvode/cvode_dense.c cvode-2.6.0/src/cvode/cvode_band.c cvode-2.6.0/src/cvode/cvode_lapack.c cvode-2.6.0/src/cvode/cvode_diag.c cvode-2.6.0/src/cvode/cvode_spils.c cvode-2.6.0/src/cvode/cvode_spgmr.c cvode-2.6.0/src/cvode/cvode_spbcgs.c cvode-2.6.0/src/cvode/cvode_sptfqmr.c cvode-2.6.0/src/cvode/cvode_bandpre.c cvode-2.6.0/src/cvode/cvode_bbdpre.c cvode-2.6.0/src/cvode/cvode_impl.h cvode-2.6.0/src/cvode/cvode_direct_impl.h cvode-2.6.0/src/cvode/cvode_diag_impl.h cvode-2.6.0/src/cvode/cvode_spils_impl.h cvode-2.6.0/src/cvode/cvode_bandpre_impl.h cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h cvode-2.6.0/src/cvode/fcmix/Makefile.in cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt cvode-2.6.0/src/cvode/fcmix/fcvode.c cvode-2.6.0/src/cvode/fcmix/fcvewt.c cvode-2.6.0/src/cvode/fcmix/fcvpreco.c cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c cvode-2.6.0/src/cvode/fcmix/fcvband.c cvode-2.6.0/src/cvode/fcmix/fcvdense.c cvode-2.6.0/src/cvode/fcmix/fcvlapack.c cvode-2.6.0/src/cvode/fcmix/fcvlapband.c cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c cvode-2.6.0/src/cvode/fcmix/fcvbp.c cvode-2.6.0/src/cvode/fcmix/fcvbbd.c cvode-2.6.0/src/cvode/fcmix/fcvroot.c cvode-2.6.0/src/cvode/fcmix/fcvode.h cvode-2.6.0/src/cvode/fcmix/fcvbp.h cvode-2.6.0/src/cvode/fcmix/fcvbbd.h cvode-2.6.0/src/cvode/fcmix/fcvroot.h cvode-2.6.0/examples/cvode/serial/README cvode-2.6.0/examples/cvode/serial/Makefile.in cvode-2.6.0/examples/cvode/serial/CMakeLists.txt cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out cvode-2.6.0/examples/cvode/fcmix_serial/README cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out cvode-2.6.0/examples/cvode/parallel/README cvode-2.6.0/examples/cvode/parallel/Makefile.in cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/README cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out ~/build/BUILD/bionetgen-2.5.0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.VmgJ5c + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + pushd bionetgen-BioNetGen-2.5.0/bng2/Network3 + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac + sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' cvode-2.6.0/configure.ac + sed -i 's/muparser_.*//' configure.ac Makefile.am + sed -i -r 's!(run_network_LDADD =).*!\1 libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser!' src/Makefile.am + autoreconf -iv --no-recursive BUILDSTDERR: autoreconf: Entering directory `.' BUILDSTDERR: autoreconf: configure.ac: not using Gettext BUILDSTDERR: autoreconf: running: aclocal -I m4 BUILDSTDERR: aclocal: warning: couldn't open directory 'm4': No such file or directory BUILDSTDERR: autoreconf: configure.ac: tracing BUILDSTDERR: autoreconf: running: libtoolize --copy BUILDSTDERR: autoreconf: running: /usr/bin/autoconf BUILDSTDERR: autoreconf: running: /usr/bin/autoheader BUILDSTDERR: autoreconf: running: automake --add-missing --copy --no-force BUILDSTDERR: configure.ac:12: installing './ar-lib' BUILDSTDERR: configure.ac:12: installing './compile' BUILDSTDERR: configure.ac:16: installing './config.guess' BUILDSTDERR: configure.ac:16: installing './config.sub' BUILDSTDERR: configure.ac:6: installing './install-sh' BUILDSTDERR: configure.ac:6: installing './missing' BUILDSTDERR: src/Makefile.am: installing './depcomp' BUILDSTDERR: autoreconf: Leaving directory `.' + warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + '[' 1 = 1 ']' BUILDSTDERR: +++ dirname ./configure BUILDSTDERR: ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config.guess BUILDSTDERR: ++ basename ./config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.guess BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./cvode-2.6.0/config/config.guess + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./cvode-2.6.0/config/config.sub BUILDSTDERR: ++ basename ./cvode-2.6.0/config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./cvode-2.6.0/config/config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) BUILDSTDERR: ++ basename ./config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config.sub BUILDSTDERR: ++ basename ./config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' BUILDSTDERR: ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./cvode-2.6.0/config/ltmain.sh + ./configure --build=ppc64le-redhat-linux-gnu --host=ppc64le-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info CC=gcc CXX=g++ F77=gfortran ~/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3 ~/build/BUILD/bionetgen-2.5.0 libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' '/usr/lib/rpm/redhat/config.guess' -> './config.guess' '/usr/lib/rpm/redhat/config.guess' -> './cvode-2.6.0/config/config.guess' '/usr/lib/rpm/redhat/config.sub' -> './cvode-2.6.0/config/config.sub' '/usr/lib/rpm/redhat/config.sub' -> './config.sub' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for ppc64le-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ppc64le-redhat-linux-gnu-ar... no checking for ppc64le-redhat-linux-gnu-lib... no checking for ppc64le-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking for ppc64le-redhat-linux-gnu-ar... ar checking the archiver (ar) interface... (cached) ar checking build system type... powerpc64le-redhat-linux-gnu checking host system type... powerpc64le-redhat-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert powerpc64le-redhat-linux-gnu file names to powerpc64le-redhat-linux-gnu format... func_convert_file_noop checking how to convert powerpc64le-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for ppc64le-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ppc64le-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ppc64le-redhat-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for ppc64le-redhat-linux-gnu-strip... no checking for strip... strip checking for ppc64le-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for ppc64le-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for ppc64le-redhat-linux-gnu-gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... no checking for pow... no checking for rint... no checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in cvode-2.6.0 (/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0) BUILDSTDERR: configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' '--build=ppc64le-redhat-linux-gnu' '--host=ppc64le-redhat-linux-gnu' '--program-prefix=' '--disable-dependency-tracking' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' 'CC=gcc' 'CXX=g++' 'F77=gfortran' 'build_alias=ppc64le-redhat-linux-gnu' 'host_alias=ppc64le-redhat-linux-gnu' 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lconfigure: WARNING: cannot find MPI-C compiler ib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' --cache-file=/dev/null --srcdir=. --------------------------------- Running SUNDIALS Configure Script --------------------------------- Initialization -------------- checking build system type... powerpc64le-redhat-linux-gnu checking host system type... powerpc64le-redhat-linux-gnu checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c C Compiler Settings ------------------- checking for ppc64le-redhat-linux-gnu-cc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking floating-point data type to use... double checking for C compiler flags... none checking how to run the C preprocessor... gcc -E checking for C/C++ preprocessor flags... none checking for linker flags... none checking for extra libraries... none checking for ANSI C header files... yes checking for stdlib.h... (cached) yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for abs in -lm... yes checking for fabs in -lm... yes checking for pow in -lm... yes checking for sqrt in -lm... yes checking for additional required C libraries... -lm checking for int... yes checking size of int... 4 checking for long int... yes checking size of long int... 8 checking for double... yes checking size of double... 8 checking for egrep... (cached) /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking if gcc is a C++ compiler... no Fortran Settings ---------------- checking for ppc64le-redhat-linux-gnu-f77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for extra Fortran compiler flags... none checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/ppc64le-redhat-linux/9 -L/usr/lib/gcc/ppc64le-redhat-linux/9/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/ppc64le-redhat-linux/9/../../.. -lgfortran -lm -lquadmath checking which linker to use... gfortran checking for Fortran name-mangling scheme of C identifiers... lower case + one underscore checking for Fortran name-mangling scheme of C identifiers with underscores... lower case + one underscore checking for dgemm_... no checking for dgemm_ in -lcxml... no checking for dgemm_ in -ldxml... no checking for dgemm_ in -lscs... no checking for dgemm_ in -lcomplib.sgimath... no checking for dgemm_ in -lblas... no checking for dgemm_ in -lblas... (cached) no checking for Blas/Lapack library linkage... "no" Unable to determine Blas/Lapack library linkage. Try using --with-blas and --with-lapack. Disabling compilation of Blas/Lapack interfaces... MPI-C Settings -------------- checking if using MPI-C script... yes checking if absolute path to mpicc was given... no checking for mpicc... none Unable to find a functional MPI-C compiler. Try using --with-mpicc to specify a MPI-C compiler script, --with-mpi-incdir, --with-mpi-libdir and --with-mpi-libs to specify the locations of all relevant MPI files, or --with-mpi-root to specify the base installation directory of the MPI implementation to be used. Disabling the parallel NVECTOR module and all parallel examples... Libtool Settings ---------------- checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking the maximum length of command line arguments... 1572864 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ppc64le-redhat-linux-gnu-ar... no checking for ar... ar checking for ppc64le-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking for ppc64le-redhat-linux-gnu-strip... no checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf64ppc) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf64ppc checking if the linker (/usr/bin/ld -m elf64ppc) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64ppc) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf64ppc) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking whether the gfortran linker (/usr/bin/ld -m elf64ppc) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate Create Makefiles and configuration files ---------------------------------------- configure: creating ./config.status config.status: creating Makefile config.status: creating src/sundials/Makefile config.status: creating src/nvec_ser/Makefile config.status: creating src/cvode/Makefile config.status: creating src/cvode/fcmix/Makefile config.status: creating include/sundials/sundials_config.h config.status: creating bin/sundials-config config.status: creating config.h *************** * WARNING * *************** BUILDSTDERR: At l++ echo '-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' BUILDSTDERR: ++ sed -e s/-Werror=format-security/-Wno-error=format-security/g + SETOPT_FLAGS='-O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C cvode-2.6.0 V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' 'CFLAGS=-O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' BUILDSTDERR: make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. east one warning was issued. Some features were disabled. Review the configure output and/or the contents of config.log before proceeding with the build. ------------------------------ SUNDIALS Configuration Summary ------------------------------ Configuration ------------- Host System: powerpc64le-redhat-linux-gnu Build System: powerpc64le-redhat-linux-gnu C Preprocessor: gcc -E C Preprocessor Flags: C Compiler: gcc C Compiler Flags -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection C Linker: gcc Linker Flags: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld Libraries: -lm Fortran Compiler: gfortran Fortran Compiler Flags: -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules Fortran Linker: gfortran Extra Fortran Libraries: -L/usr/lib/gcc/ppc64le-redhat-linux/9 -L/usr/lib/gcc/ppc64le-redhat-linux/9/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/ppc64le-redhat-linux/9/../../.. -lgfortran -lm -lquadmath srcdir: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0 builddir: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0 prefix: /usr exec_prefix: /usr includedir: /usr/include libdir: /usr/lib64 Modules ------- CVODE FCVODE Type 'make' and then 'make install' to build and install SUNDIALS 2.4.0. ---------------------------------- Finished SUNDIALS Configure Script ---------------------------------- ---------------------- Make src/sundials... ---------------------- make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c -o sundials_direct.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c -o sundials_band.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c -o sundials_dense.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c -o sundials_iterative.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c -o sundials_math.o BUILDSTDERR: /bin/sh ../../libtool --mode=compilmake[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. e gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c -o sundials_nvector.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c -o sundials_spgmr.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c -o sundials_spbcgs.o /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c -o sundials_sptfqmr.o make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' ---------------------- Make src/nvec_ser... ---------------------- make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c -o fnvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fnvecserial.la fnvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 0:2:0 mkdir .libs ar cru .libs/libsundials_fnvecserial.a fnvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_fnvecserial.a creating libsundials_fnvecserial.la (cd .libs && rm -f libsundials_fnvecserial.la && ln -s ../libsundials_fnvecserial.la libsundials_fnvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' BUILDSTDERR: /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fmake[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. stack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c -o nvector_serial.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' /bin/sh ../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_nvecserial.la nvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 0:2:0 ar cru .libs/libsundials_nvecserial.a nvector_serial.o ../../src/sundials/sundials_math.o ranlib .libs/libsundials_nvecserial.a creating libsundials_nvecserial.la (cd .libs && rm -f libsundials_nvecserial.la && ln -s ../libsundials_nvecserial.la libsundials_nvecserial.la) make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/nvec_ser' ---------------------- Make src/cvode... ---------------------- make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Nothing to be done for 'lib_without_bl'. make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c -o cvode_band.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c -o cvode_direct.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c -o cvode_io.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c -o cvode_dense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c -o cvode_diag.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c -o cvode_spils.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c -o cvode_spbcgs.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c -o cvode_spgmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c -o cvode_sptfqmr.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c -o cvode_bandpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' BUILDSTDERR: /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-smake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. witches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c -o cvode_bbdpre.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' /bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c gcc -I./../../include -I../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c -o cvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[4]: Nothing to be done for 'lib_without_bl'. make[4]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/sundials' /bin/sh ../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_cvode.la cvode.lo cvode_io.lo cvode_direct.lo cvode_band.lo cvode_dense.lo cvode_diag.lo cvode_spils.lo cvode_spbcgs.lo cvode_spgmr.lo cvode_sptfqmr.lo cvode_bandpre.lo cvode_bbdpre.lo ../../src/sundials/sundials_band.lo ../../src/sundials/sundials_dense.lo ../../src/sundials/sundials_direct.lo ../../src/sundials/sundials_iterative.lo ../../src/sundials/sundials_spgmr.lo ../../src/sundials/sundials_spbcgs.lo ../../src/sundials/sundials_sptfqmr.lo ../../src/sundials/sundials_math.lo ../../src/sundials/sundials_nvector.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -version-info 1:0:0 mkdir .libs ar cru .libs/libsundials_cvode.a cvode.o cvode_io.o cvode_direct.o cvode_band.o cvode_dense.o cvode_diag.o cvode_spils.o cvode_spbcgs.o cvode_spgmr.o cvode_sptfqmr.o cvode_bandpre.o cvode_bbdpre.o ../../src/sundials/sundials_band.o ../../src/sundials/sundials_dense.o ../../src/sundials/sundials_direct.o ../../src/sundials/sundials_iterative.o ../../src/sundials/sundials_spgmr.o ../../src/sundials/sundials_spbcgs.o ../../src/sundials/sundials_sptfqmr.o ../../src/sundials/sundials_math.o ../../src/sundials/sundials_nvector.o ranlib .libs/libsundials_cvode.a creating libsundials_cvode.la (cd .libs && rm -f libsundials_cvode.la && ln -s ../libsundials_cvode.la libsundials_cvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode' ---------------------- Make src/cvode/fcmix... ---------------------- make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c -o fcvdense.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c -o fcvjtimes.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c -o fcvband.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c -o fcvode.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c -o fcvbbd.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c -o fcvpreco.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c -o fcvbp.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c -o fcvroot.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' BUILDSTDERR: make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C src V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' 2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c -o fcvewt.o make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' /bin/sh ../../../libtool --mode=link gcc -O2 -g -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fcvode.la fcvode.lo fcvband.lo fcvdense.lo fcvjtimes.lo fcvpreco.lo fcvbbd.lo fcvbp.lo fcvroot.lo fcvewt.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lm -static -version-info 0:1:0 mkdir .libs ar cru .libs/libsundials_fcvode.a fcvode.o fcvband.o fcvdense.o fcvjtimes.o fcvpreco.o fcvbbd.o fcvbp.o fcvroot.o fcvewt.o ranlib .libs/libsundials_fcvode.a creating libsundials_fcvode.la (cd .libs && rm -f libsundials_fcvode.la && ln -s ../libsundials_fcvode.la libsundials_fcvode.la) make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/cvode-2.6.0/src/cvode/fcmix' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIn file included from util/mathutils/cabs.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/cadd.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/allocate.c: In function 'ALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 9 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/allocate.c: In function 'IALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 100 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/allocate.c: In function 'ZALLOC_MATRIX': BUILDSTDERR: util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 191 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/allocate.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/cconj.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ IONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONIn file included from util/mathutils/cmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/complex_zero.c:2: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/copy_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/cprob.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ S -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fIn file included from util/mathutils/csub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/dotp.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/expi.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/eigensystem.c:1: BUILDSTDERR: util/mathutils/eigensystem.c: In function 'SYM_EIGENSYSTEM': BUILDSTDERR: util/mathutils/eigensystem.c:27:11: warning: implicit declaration of function 'dsyev' [-Wimplicit-function-declaration] BUILDSTDERR: 27 | FNAME(dsyev)(&jobz, &uplo, &N, A[0], &N, evals, work, &lwork, &info); BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' BUILDSTDERR: 18 | #define FNAME(fun) fun BUILDSTDERR: | ^~~ BUILDSTDERR: util/mathutils/eigensystem.c: In function 'GEN_SYM_EIGENSYSTEM': BUILDSTDERR: util/mathutils/eigensystem.c:58:11: warning: implicit declaration of function 'dsygv' [-Wimplicit-function-declaration] BUILDSTDERR: 58 | FNAME(dsygv)(&itype, &jobz, &uplo, &N, A[0], &N, B[0], &N, evals, work, BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:18:20: note: in definition of macro 'FNAME' BUILDSTDERR: 18 | #define FNAME(fun) fun BUILDSTDERR: | ^~~ BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/gram_schmidt.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/herm_matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ stack-clash-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1 BUILDSTDERR: make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgeIn file included from util/mathutils/icmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/herm_matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/init.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/linsolve.c: In function 'LINSOLVE': BUILDSTDERR: util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable] BUILDSTDERR: 16 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable] BUILDSTDERR: 16 | register int i,j; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/linsolve.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/integration.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matherr.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ n-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/init.lo util/mathutils/init.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mathutils/.libs/integration.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bngIn file included from util/mathutils/matrix_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_elt.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_sub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrix_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ 2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SIn file included from util/mathutils/matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/matrixexp.c:5: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/norm.c: In function 'NORM': BUILDSTDERR: util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable] BUILDSTDERR: 14 | double norm; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/norm.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/normsq.c: In function 'NORMSQ': BUILDSTDERR: util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable] BUILDSTDERR: 13 | double norm; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/normsq.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/minimum.c: In function 'MIN_BRACKET': BUILDSTDERR: util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable] BUILDSTDERR: 17 | double ulim,u,r,q,fu,dum; BUILDSTDERR: | ^~~ BUILDSTDERR: In file included from util/mathutils/minimum.c:3: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/minimum.c: In function 'MIN_FIND': BUILDSTDERR: util/mathutils/minimum.c:117:31: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 117 | if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x)) BUILDSTDERR: | ~~~~~^~~~~~ OURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redIn file included from util/mathutils/project.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/random.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/rcmult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE': BUILDSTDERR: util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable] BUILDSTDERR: 5 | double **At, *Aptr, *Atptr; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable] BUILDSTDERR: 5 | double **At, *Aptr, *Atptr; BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/rect_transpose.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/roots.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/roots.c: In function 'ROOT_FIND': BUILDSTDERR: util/mathutils/roots.c:69:17: warning: 'e' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 69 | min2=fabs(e*q); BUILDSTDERR: | ~^~ hat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/project.lo util/mathutils/project.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/random.lo util/mathutils/random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c BUILDSTDERR: In file included from util/mathutils/scale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/runge-kutta.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/splines.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/sum_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/sym_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/runge-kutta.c -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstIn file included from util/mathutils/sym_matrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/sym_matrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/sympos_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main() BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/test_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main(){ BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testdummy.c: In function 'main': BUILDSTDERR: util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable] BUILDSTDERR: 5 | int incx=1; BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 9 | scanf("%d", &n); BUILDSTDERR: | ^~~~~~~~~~~~~~~ BUILDSTDERR: util/mathutils/testdummy.c:15:2: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 15 | scanf("%lf", x+i); BUILDSTDERR: | ^~~~~~~~~~~~~~~~~ BUILDSTDERR: In file included from util/mathutils/testdummy.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ ack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIOutil/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 7 | main() BUILDSTDERR: | ^~~~ BUILDSTDERR: In file included from util/mathutils/testspline.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main(int argc, char *argv[]){ BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testgram.c: In function 'main': BUILDSTDERR: util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^ BUILDSTDERR: util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~~ BUILDSTDERR: util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~ BUILDSTDERR: util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable] BUILDSTDERR: 5 | int nr, n_run; BUILDSTDERR: | ^~ BUILDSTDERR: In file included from util/mathutils/testgram.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from util/mathutils/svd.c:2: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 3 | main(int argc, char *argv[]){ BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testsvd.c: In function 'main': BUILDSTDERR: util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~~ BUILDSTDERR: util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^~ BUILDSTDERR: util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable] BUILDSTDERR: 7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/testsvd.c:1: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: In file included from util/mathutils/vector_dist.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ NS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.libs/testdummy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tablesIn file included from util/mathutils/vector_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zcopy_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zdotc.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zdotu.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_add.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ -fstack-clash-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=In file included from util/mathutils/zmatrix_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_sub.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_transpose.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zmatrix_vector_mult.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/znorm.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-DIn file included from util/mathutils/znormsq.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zrscale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zscale_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zsum_vector.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: In file included from util/mathutils/zsym_linsolve.c:1: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ _GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o BUILDSTDERR: libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redutil/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int] BUILDSTDERR: 6 | main (int argc, char *argv[]) BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testutils.c: In function 'main': BUILDSTDERR: util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable] BUILDSTDERR: 15 | dcomplex z1; BUILDSTDERR: | ^~ BUILDSTDERR: util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable] BUILDSTDERR: 10 | int seed; BUILDSTDERR: | ^~~~ BUILDSTDERR: util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable] BUILDSTDERR: 8 | int i,j,k; BUILDSTDERR: | ^ BUILDSTDERR: In file included from util/mathutils/testutils.c:2: BUILDSTDERR: At top level: BUILDSTDERR: util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable] BUILDSTDERR: 364 | static double dswap; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable] BUILDSTDERR: 359 | static int imarg1, imarg2; BUILDSTDERR: | ^~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable] BUILDSTDERR: 356 | static double marg1, marg2; BUILDSTDERR: | ^~~~~ BUILDSTDERR: util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 354 | static int isqrarg; BUILDSTDERR: | ^~~~~~~ BUILDSTDERR: util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable] BUILDSTDERR: 352 | static double sqrarg; BUILDSTDERR: | ^~~~~~ hat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1 make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /bin/sh ../libtool --tag=CC --mode=link gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo libtool: link: ar cru .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o libtool: link: ranlib .libs/libmathutils.a libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" ) make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' BUILDSTDERR: /bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_netw+ popd + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 ork-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser libtool: link: g++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a ../cvode-2.6.0/src/nvec_ser/.libs/libsundials_nvecserial.a ../cvode-2.6.0/src/cvode/.libs/libsundials_cvode.a -lm -lmuparser make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' ~/build/BUILD/bionetgen-2.5.0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.zkpj38 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le + cd bionetgen-2.5.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le 'INSTALL=/usr/bin/install -p' -C bionetgen-BioNetGen-2.5.0/bng2/Network3/src + mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl/BioNetGen + cp -r bionetgen-BioNetGen-2.5.0/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/ + cp -r bionetgen-BioNetGen-2.5.0/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/ + cp -a bionetgen-BioNetGen-2.5.0/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/ + rm -f /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_ppc64le-linux + rm -f /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2.5.0-3.fc31 --unique-debug-suffix -2.5.0-3.fc31.ppc64le --unique-debug-src-base bionetgen-2.5.0-3.fc31.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.5.0 BUILDSTDERR: 1829 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs make: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/bin' libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/bin/run_network make[1]: Nothing to be done for 'install-data-am'. make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' make: Leaving directory '/builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Network3/src' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl' mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/perl5/vendor_perl/BioNetGen' explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/bin/run_network extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/bin/run_network original debug info size: 13044kB, size after compression: 10676kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.0JMPSc + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + pushd bionetgen-BioNetGen-2.5.0/bng2/Models2 + install -pm 755 ../Network3/src/run_network -D ./bin/run_network_ppc64le-linux + install -pm 755 ../Network3/src/run_network -D ../bin/run_network_ppc64le-linux + echo 'Running some tests ...' + ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. ~/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Models2 ~/build/BUILD/bionetgen-2.5.0 Running some tests ... BioNetGen version 2.5.0 Reading from file CaOscillate_Func.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Func ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./CaOscillate_Func.net. CPU TIME: generate_network 0.01 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net. Wrote network in net format to ./CaOscillate_Func.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200 [simulation PID is: 15368] run_network 3.0 Read 17 parameters from ./CaOscillate_Func.net Read 4 species from ./CaOscillate_Func.net Read 4 group(s) from ./CaOscillate_Func.net Read 4 function(s) from ./CaOscillate_Func.net Read 8 reaction(s) from ./CaOscillate_Func.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 719 851 0.20 753 889 0.30 788 924 0.40 822 962 0.50 857 997 0.60 891 1035 0.70 926 1070 0.80 960 1108 0.90 995 1147 1.00 1029 1181 1.10 1064 1221 1.20 1098 1257 1.30 1133 1299 1.40 1167 1335 1.50 1215 1393 1.60 1263 1449 1.70 1324 1520 1.80 1389 1596 1.90 1460 1680 2.00 1544 1781 2.10 1620 1865 2.20 1697 1946 2.30 1749 2005 2.40 1800 2063 2.50 1854 2128 2.60 1993 2299 2.70 2464 2852 2.80 2562 2973 2.90 2607 3025 3.00 2657 3086 3.10 2718 3156 3.20 2779 3224 3.30 2839 3290 3.40 2900 3355 3.50 2961 3420 3.60 3018 3482 3.70 3071 3550 3.80 3200 3708 3.90 3345 3881 4.00 3456 4003 4.10 3521 4073 4.20 3572 4129 4.30 3624 4186 4.40 3671 4234 4.50 3707 4279 4.60 3753 4333 4.70 3799 4383 4.80 3856 4451 4.90 3913 4526 5.00 3969 4585 5.10 4010 4632 5.20 4047 4675 5.30 4080 4709 5.40 4105 4739 5.50 4129 4764 5.60 4154 4797 5.70 4178 4823 5.80 4201 4848 5.90 4221 4871 6.00 4241 4897 6.10 4261 4918 6.20 4281 4943 6.30 4294 4956 6.40 4307 4970 6.50 4321 4984 6.60 4334 4997 6.70 4347 5014 6.80 4356 5024 6.90 4365 5033 7.00 4374 5042 7.10 4383 5052 7.20 4392 5062 7.30 4401 5071 7.40 4410 5086 7.50 4419 5095 7.60 4427 5103 7.70 4436 5113 7.80 4445 5123 7.90 4457 5142 8.00 4469 5165 8.10 4481 5179 8.20 4491 5192 8.30 4504 5211 8.40 4522 5240 8.50 4543 5268 8.60 4568 5298 8.70 4607 5350 8.80 4663 5420 8.90 4772 5555 9.00 5104 5945 9.10 5399 6270 9.20 5507 6389 9.30 5546 6435 9.40 5561 6451 9.50 5573 6463 9.60 5585 6475 9.70 5597 6492 9.80 5608 6503 9.90 5620 6516 10.00 5632 6528 10.10 5644 6541 10.20 5656 6558 10.30 5668 6570 10.40 5680 6584 10.50 5692 6596 10.60 5703 6609 10.70 5715 6626 10.80 5727 6639 10.90 5739 6653 11.00 5751 6665 11.10 5767 6683 11.20 5783 6704 11.30 5799 6721 11.40 5815 6738 11.50 5831 6754 11.60 5847 6776 11.70 5863 6794 11.80 5879 6812 11.90 5895 6834 12.00 5911 6850 12.10 5927 6868 12.20 5943 6886 12.30 5959 6908 12.40 5975 6926 12.50 5991 6942 12.60 6012 6967 12.70 6034 6994 12.80 6056 7020 12.90 6078 7048 13.00 6100 7072 13.10 6128 7108 13.20 6158 7140 13.30 6188 7177 13.40 6223 7216 13.50 6263 7264 13.60 6311 7322 13.70 6366 7387 13.80 6435 7464 13.90 6507 7550 BUILDSTDERR: 14.00 659Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. 4 7646 14.10 6673 7738 14.20 6750 7820 14.30 6803 7880 14.40 6856 7939 14.50 6911 8005 14.60 7038 8162 14.70 7513 8728 14.80 7634 8876 14.90 7681 8925 15.00 7731 8985 15.10 7793 9054 15.20 7848 9121 15.30 7904 9185 15.40 7960 9246 15.50 8016 9306 15.60 8072 9366 15.70 8129 9434 15.80 8253 9587 15.90 8393 9752 16.00 8510 9880 16.10 8578 9953 16.20 8634 10013 16.30 8690 10073 16.40 8738 10126 16.50 8776 10172 16.60 8820 10221 16.70 8870 10277 16.80 8928 10346 16.90 8988 10415 17.00 9046 10480 17.10 9088 10524 17.20 9126 10568 17.30 9160 10607 17.40 9185 10632 17.50 9211 10659 17.60 9236 10692 17.70 9261 10718 17.80 9284 10747 17.90 9304 10769 18.00 9325 10791 18.10 9346 10817 18.20 9365 10837 18.30 9376 10850 18.40 9385 10859 18.50 9394 10874 18.60 9404 10884 18.70 9413 10894 18.80 9422 10903 18.90 9431 10912 19.00 9440 10921 19.10 9449 10930 19.20 9459 10945 19.30 9468 10954 19.40 9477 10964 19.50 9486 10973 19.60 9495 10984 19.70 9505 10994 19.80 9514 11012 19.90 9523 11021 20.00 9532 11031 Time course of concentrations written to file ./CaOscillate_Func.cdat. Time course of groups written to file ./CaOscillate_Func.gdat. Propagation took 4.00e-02 CPU seconds Program times: 0.04 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Func.cdat CPU TIME: simulate 0.04 s. Finished processing file CaOscillate_Func.bngl. CPU TIME: total 0.10 s. BioNetGen version 2.5.0 Reading from file CaOscillate_Sat.bngl (level 0) Read 17 parameters. Read 4 molecule types. Read 4 species. Read 4 observable(s). Read 8 reaction rule(s). ACTION: generate_network( CaOscillate_Sat ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 4 species 8 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Wrote network in net format to ./CaOscillate_Sat.net. CPU TIME: generate_network 0.01 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net. Wrote network in net format to ./CaOscillate_Sat.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200 [simulation PID is: 15370] run_network 3.0 Read 17 parameters from ./CaOscillate_Sat.net Read 4 species from ./CaOscillate_Sat.net Read 4 group(s) from ./CaOscillate_Sat.net Read 0 function(s) from ./CaOscillate_Sat.net Read 8 reaction(s) from ./CaOscillate_Sat.net 8 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU time n_steps n_deriv_calls 0.00 0 0 0.10 717 850 0.20 741 879 0.30 765 904 0.40 790 930 0.50 814 960 0.60 838 985 0.70 863 1015 0.80 887 1040 0.90 911 1066 1.00 936 1099 1.10 961 1129 1.20 993 1171 1.30 1025 1207 1.40 1064 1257 1.50 1108 1309 1.60 1155 1366 1.70 1210 1431 1.80 1284 1514 1.90 1358 1601 2.00 1442 1703 2.10 1521 1789 2.20 1596 1869 2.30 1649 1928 2.40 1701 1987 2.50 1757 2053 2.60 1896 2222 2.70 2360 2768 2.80 2463 2900 2.90 2511 2957 3.00 2560 3015 3.10 2618 3082 3.20 2677 3148 3.30 2735 3213 3.40 2793 3275 3.50 2852 3338 3.60 2910 3400 3.70 2969 3470 3.80 3099 3626 3.90 3243 3798 4.00 3343 3906 4.10 3413 3985 4.20 3479 4055 4.30 3546 4126 4.40 3590 4175 4.50 3634 4222 4.60 3679 4275 4.70 3723 4327 4.80 3778 4394 4.90 3835 4465 5.00 3890 4527 5.10 3930 4571 5.20 3966 4613 5.30 3999 4651 5.40 4023 4676 5.50 4047 4702 5.60 4071 4732 5.70 4095 4759 5.80 4117 4787 5.90 4138 4811 6.00 4158 4833 6.10 4178 4854 6.20 4198 4879 6.30 4211 4892 6.40 4225 4907 6.50 4238 4924 6.60 4252 4938 6.70 4265 4951 6.80 4274 4961 6.90 4283 4970 7.00 4292 4979 7.10 4301 4989 7.20 4310 5003 7.30 4319 5012 BUILDSTDERR: 7.40 4328 Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. 5022 7.50 4337 5031 7.60 4345 5040 7.70 4354 5050 7.80 4363 5064 7.90 4372 5079 8.00 4381 5088 8.10 4390 5099 8.20 4400 5115 8.30 4412 5134 8.40 4431 5179 8.50 4456 5205 8.60 4483 5240 8.70 4519 5286 8.80 4575 5356 8.90 4682 5482 9.00 5014 5875 9.10 5309 6200 9.20 5417 6315 9.30 5456 6361 9.40 5471 6377 9.50 5482 6388 9.60 5493 6404 9.70 5505 6417 9.80 5516 6428 9.90 5527 6440 10.00 5539 6452 10.10 5550 6468 10.20 5561 6479 10.30 5573 6493 10.40 5584 6504 10.50 5595 6517 10.60 5607 6535 10.70 5618 6546 10.80 5630 6560 10.90 5643 6575 11.00 5658 6595 11.10 5673 6610 11.20 5689 6627 11.30 5704 6644 11.40 5719 6665 11.50 5735 6681 11.60 5750 6698 11.70 5765 6715 11.80 5781 6737 11.90 5796 6753 12.00 5811 6769 12.10 5827 6787 12.20 5842 6808 12.30 5857 6825 12.40 5873 6841 12.50 5892 6863 12.60 5913 6889 12.70 5934 6912 12.80 5955 6935 12.90 5975 6961 13.00 6001 6992 13.10 6029 7028 13.20 6057 7058 13.30 6095 7112 13.40 6133 7157 13.50 6171 7203 13.60 6220 7263 13.70 6275 7328 13.80 6345 7407 13.90 6415 7492 14.00 6497 7592 14.10 6572 7678 14.20 6647 7757 14.30 6703 7819 14.40 6753 7876 14.50 6805 7938 14.60 6932 8095 14.70 7381 8618 14.80 7498 8747 14.90 7552 8807 15.00 7599 8867 15.10 7663 8938 15.20 7718 9002 15.30 7774 9065 15.40 7831 9127 15.50 7887 9187 15.60 7944 9244 15.70 8001 9317 15.80 8126 9469 15.90 8281 9649 16.00 8392 9771 16.10 8457 9841 16.20 8507 9898 16.30 8557 9954 16.40 8604 10006 16.50 8640 10047 16.60 8685 10100 16.70 8730 10154 16.80 8785 10215 16.90 8841 10289 17.00 8895 10347 17.10 8935 10395 17.20 8971 10437 17.30 9004 10471 17.40 9028 10499 17.50 9051 10525 17.60 9075 10551 17.70 9098 10580 17.80 9120 10605 17.90 9140 10629 18.00 9160 10655 18.10 9181 10677 18.20 9200 10701 18.30 9210 10716 18.40 9221 10728 18.50 9232 10740 18.60 9243 10751 18.70 9254 10762 18.80 9265 10773 18.90 9276 10788 19.00 9287 10799 19.10 9298 10810 19.20 9309 10821 19.30 9320 10832 19.40 9331 10847 19.50 9342 10858 19.60 9353 10869 19.70 9364 10880 19.80 9375 10891 19.90 9386 10903 20.00 9397 10919 Time course of concentrations written to file ./CaOscillate_Sat.cdat. Time course of groups written to file ./CaOscillate_Sat.gdat. Propagation took 3.00e-02 CPU seconds Program times: 0.03 CPU s 0.00 clock s Updating species concentrations from ./CaOscillate_Sat.cdat CPU TIME: simulate 0.03 s. Finished processing file CaOscillate_Sat.bngl. CPU TIME: total 0.07 s. BioNetGen version 2.5.0 Reading from file catalysis.bngl (level 0) CPU TIME: version 0.00 s. Read 17 parameters. Read 1 compartments. Read 5 molecule types. Read 5 species. Read 4 reaction rule(s). Read 4 energy patterns(s). Read 6 observable(s). ACTION: generate_network( catalysis ) Iteration 0: 5 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 2 rxns 1.00e-02 CPU s Iteration 2: 9 species 6 rxns 2.00e-02 CPU s Iteration 3: 10 species 10 rxns 1.00e-02 CPU s Iteration 4: 10 species 12 rxns 1.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 3: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 4: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Total : 12 reactions 3.00e-02 CPU s 2.50e-03 CPU s/rxn Wrote network in net format to ./catalysis.net. CPU TIME: generate_network 0.05 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./catalysis.net. Wrote network in net format to ./catalysis.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120 [simulation PID is: 15372] run_network 3.0 Read 30 parameters from ./catalysis.net @C::$ATP() is a fixed (boundaryCondition) variable @C::$ADP() is a fixed (boundaryCondition) variable Read 10 species from ./catalysis.net Read 6 group(s) from ./catalysis.net Read 0 function(s) from ./catalysis.net Read 12 reaction(s) from ./catalysis.net 12 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./catalysis.cdat. Time course of groups written to file ./catalysis.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./catalysis.cdat CPU TIME: simulate 0.03 s. Finished processing file catalysis.bngl. CPU TIME: total 0.12 s. BioNetGen version 2.5.0 Reading from file egfr_net.bngl (level 0) BUILDSTDERR: Read 48 pCan't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. arameters. Read 5 molecule types. Read 6 species. Read 23 reaction rule(s). Read 15 observable(s). ACTION: generate_network( egfr_net ) Iteration 0: 6 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 2.00e-02 CPU s Iteration 2: 8 species 5 rxns 2.00e-02 CPU s Iteration 3: 10 species 8 rxns 2.00e-02 CPU s Iteration 4: 19 species 21 rxns 7.00e-02 CPU s Iteration 5: 37 species 76 rxns 2.80e-01 CPU s Iteration 6: 69 species 213 rxns 6.60e-01 CPU s Iteration 7: 131 species 494 rxns 1.51e+00 CPU s Iteration 8: 295 species 1260 rxns 4.80e+00 CPU s Iteration 9: 356 species 3088 rxns 1.26e+01 CPU s Iteration 10: 356 species 3749 rxns 5.91e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 2.90e-01 CPU s 6.04e-03 CPU s/rxn Rule 2: 600 reactions 6.29e+00 CPU s 1.05e-02 CPU s/rxn Rule 3: 144 reactions 7.20e-01 CPU s 5.00e-03 CPU s/rxn Rule 4: 96 reactions 4.80e-01 CPU s 5.00e-03 CPU s/rxn Rule 5: 156 reactions 6.60e-01 CPU s 4.23e-03 CPU s/rxn Rule 6: 104 reactions 4.40e-01 CPU s 4.23e-03 CPU s/rxn Rule 7: 96 reactions 5.50e-01 CPU s 5.73e-03 CPU s/rxn Rule 8: 104 reactions 4.80e-01 CPU s 4.62e-03 CPU s/rxn Rule 9: 312 reactions 1.80e+00 CPU s 5.77e-03 CPU s/rxn Rule 10: 312 reactions 1.85e+00 CPU s 5.93e-03 CPU s/rxn Rule 11: 312 reactions 1.97e+00 CPU s 6.31e-03 CPU s/rxn Rule 12: 208 reactions 1.15e+00 CPU s 5.53e-03 CPU s/rxn Rule 13: 208 reactions 1.17e+00 CPU s 5.63e-03 CPU s/rxn Rule 14: 208 reactions 1.49e+00 CPU s 7.16e-03 CPU s/rxn Rule 15: 208 reactions 1.61e+00 CPU s 7.74e-03 CPU s/rxn Rule 16: 208 reactions 1.39e+00 CPU s 6.68e-03 CPU s/rxn Rule 17: 208 reactions 1.52e+00 CPU s 7.31e-03 CPU s/rxn Rule 18: 208 reactions 1.48e+00 CPU s 7.12e-03 CPU s/rxn Rule 19: 2 reactions 1.00e-01 CPU s 5.00e-02 CPU s/rxn Rule 20: 2 reactions 1.10e-01 CPU s 5.50e-02 CPU s/rxn Rule 21: 1 reactions 3.00e-02 CPU s 3.00e-02 CPU s/rxn Rule 22: 2 reactions 1.30e-01 CPU s 6.50e-02 CPU s/rxn Rule 23: 2 reactions 9.00e-02 CPU s 4.50e-02 CPU s/rxn Total : 3749 reactions 2.58e+01 CPU s 6.88e-03 CPU s/rxn Wrote network in net format to ./egfr_net.net. CPU TIME: generate_network 26.22 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net.net. Wrote network in net format to ./egfr_net.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50 [simulation PID is: 15374] run_network 3.0 Read 48 parameters from ./egfr_net.net Read 356 species from ./egfr_net.net Read 15 group(s) from ./egfr_net.net Read 0 function(s) from ./egfr_net.net Read 3749 reaction(s) from ./egfr_net.net 3749 reaction(s) have nonzero rate Initialization took 0.07 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net.cdat. Time course of groups written to file ./egfr_net.gdat. Propagation took 3.50e-01 CPU seconds Program times: 0.42 CPU s 0.00 clock s Updating species concentrations from ./egfr_net.cdat CPU TIME: simulate 0.80 s. Finished processing file egfr_net.bngl. CPU TIME: total 27.17 s. BioNetGen version 2.5.0 Reading from file egfr_net_red.bngl (level 0) Read 48 parameters. Read 7 molecule types. Read 7 species. Read 14 observable(s). Read 26 reaction rule(s). ACTION: generate_network( egfr_net_red ) Iteration 0: 7 species 0 rxns 0.00e+00 CPU s Iteration 1: 11 species 4 rxns 2.00e-02 CPU s Iteration 2: 13 species 10 rxns 3.00e-02 CPU s Iteration 3: 15 species 14 rxns 2.00e-02 CPU s Iteration 4: 20 species 21 rxns 4.00e-02 CPU s Iteration 5: 26 species 39 rxns 7.00e-02 CPU s Iteration 6: 33 species 62 rxns 9.00e-02 CPU s Iteration 7: 38 species 90 rxns 1.00e-01 CPU s Iteration 8: 40 species 115 rxns 1.00e-01 CPU s Iteration 9: 40 species 123 rxns 3.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 2: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 12 reactions 3.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 4: 8 reactions 3.00e-02 CPU s 3.75e-03 CPU s/rxn Rule 5: 12 reactions 5.00e-02 CPU s 4.17e-03 CPU s/rxn Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 3 reactions 2.00e-02 CPU s 6.67e-03 CPU s/rxn Rule 9: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 10: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn Rule 11: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 12: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 13: 6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 14: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 15: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 16: 6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 17: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 18: 6 reactions 4.00e-02 CPU s 6.67e-03 CPU s/rxn Rule 19: 6 reactions 4.00e-02 CPU s 6.67e-03 CPU s/rxn Rule 20: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn Rule 21: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn Rule 22: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Rule 23: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 24: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 25: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 26: 2 reactions 2.00e-02 CPU s 1.00e-02 CPU s/rxn Total : 123 reactions 4.40e-01 CPU s 3.58e-03 CPU s/rxn Wrote network in net format to ./egfr_net_red.net. CPU TIME: generate_network 0.53 s. Set concentration of species egf(r) to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10 [simulation PID is: 15376] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.03 s. Set concentration of species egf(r) to value egf_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net. Wrote network in net format to ./egfr_net_red.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120 [simulation PID is: 15378] run_network 3.0 Read 48 parameters from ./egfr_net_red.net Read 40 species from ./egfr_net_red.net Read 14 group(s) from ./egfr_net_red.net Read 3 function(s) from ./egfr_net_red.net Read 123 reaction(s) from ./egfr_net_red.net 123 reaction(s) have nonzero rate Initialization took 0.01 CPU seconds Propagating with cvode using GMRES Time course of concentrations written to file ./egfr_net_red.cdat. Time course of groups written to file ./egfr_net_red.gdat. BUILDSTDERR: PropagatioCan't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. n took 2.00e-02 CPU seconds Program times: 0.03 CPU s 0.00 clock s Updating species concentrations from ./egfr_net_red.cdat CPU TIME: simulate 0.07 s. Finished processing file egfr_net_red.bngl. CPU TIME: total 0.79 s. BioNetGen version 2.5.0 Reading from file egfr_path.bngl (level 0) Read 48 parameters. Read 18 species. Read 19 reaction rule(s). Read 11 observable(s). ACTION: generate_network( egfr_path ) Iteration 0: 18 species 0 rxns 0.00e+00 CPU s Iteration 1: 18 species 37 rxns 7.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 2: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 3: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 5: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 6: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 7: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 8: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 9: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 10: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 11: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 12: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 13: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 14: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 15: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 16: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 17: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 18: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn Total : 37 reactions 6.00e-02 CPU s 1.62e-03 CPU s/rxn Wrote network in net format to ./egfr_path.net. CPU TIME: generate_network 0.11 s. Set concentration of species EGF() to value 0 CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10 [simulation PID is: 15380] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Simulation reached steady state by t_end=100000 Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.02 s. Set concentration of species EGF() to value EGF_tot CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./egfr_path.net. Wrote network in net format to ./egfr_path.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120 [simulation PID is: 15382] run_network 3.0 Read 48 parameters from ./egfr_path.net Read 18 species from ./egfr_path.net Read 11 group(s) from ./egfr_path.net Read 0 function(s) from ./egfr_path.net Read 37 reaction(s) from ./egfr_path.net 37 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./egfr_path.cdat. Time course of groups written to file ./egfr_path.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./egfr_path.cdat CPU TIME: simulate 0.03 s. Finished processing file egfr_path.bngl. CPU TIME: total 0.26 s. BioNetGen version 2.5.0 Reading from file energy_example1.bngl (level 0) CPU TIME: version 0.00 s. Read 19 parameters. Read 1 compartments. Read 4 molecule types. Read 4 species. Read 6 energy patterns(s). Read 11 observable(s). Read 3 reaction rule(s). ACTION: generate_network( energy_example1 ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 7 species 3 rxns 1.00e-02 CPU s Iteration 2: 10 species 12 rxns 4.00e-02 CPU s Iteration 3: 11 species 21 rxns 4.00e-02 CPU s Iteration 4: 11 species 24 rxns 2.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 2: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn Rule 3: 8 reactions 3.00e-02 CPU s 3.75e-03 CPU s/rxn Total : 24 reactions 7.00e-02 CPU s 2.92e-03 CPU s/rxn Wrote network in net format to ./energy_example1.net. CPU TIME: generate_network 0.14 s. Wrote SBML to ./energy_example1_sbml.xml. CPU TIME: writeSBML 0.01 s. Finished processing file energy_example1.bngl. CPU TIME: total 0.19 s. BioNetGen version 2.5.0 Reading from file fceri_ji.bngl (level 0) Read 26 parameters. Read 4 species. Adding pY as allowed state of component b of molecule Rec Adding pY as allowed state of component g of molecule Rec Adding pY as allowed state of component l of molecule Syk Adding pY as allowed state of component a of molecule Syk Read 19 reaction rule(s). Read 10 observable(s). ACTION: generate_network( fceri_ji ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 2.00e-02 CPU s Iteration 2: 9 species 8 rxns 2.00e-02 CPU s Iteration 3: 12 species 20 rxns 5.00e-02 CPU s Iteration 4: 22 species 36 rxns 9.00e-02 CPU s Iteration 5: 43 species 100 rxns 2.20e-01 CPU s Iteration 6: 78 species 255 rxns 5.70e-01 CPU s Iteration 7: 139 species 586 rxns 1.28e+00 CPU s Iteration 8: 199 species 1190 rxns 2.59e+00 CPU s Iteration 9: 303 species 1841 rxns 3.19e+00 CPU s Iteration 10: 354 species 3143 rxns 5.64e+00 CPU s Iteration 11: 354 species 3680 rxns 2.43e+00 CPU s Cumulative CPU time for each rule Rule 1: 48 reactions 2.70e-01 CPU s 5.63e-03 CPU s/rxn Rule 2: 1152 reactions 4.49e+00 CPU s 3.90e-03 CPU s/rxn Rule 3: 312 reactions 1.34e+00 CPU s 4.29e-03 CPU s/rxn Rule 4: 36 reactions 2.70e-01 CPU s 7.50e-03 CPU s/rxn Rule 5: 24 reactions 2.40e-01 CPU s 1.00e-02 CPU s/rxn Rule 6: 312 reactions 1.34e+00 CPU s 4.29e-03 CPU s/rxn Rule 7: 36 reactions 2.70e-01 CPU s 7.50e-03 CPU s/rxn Rule 8: 24 reactions 2.30e-01 CPU s 9.58e-03 CPU s/rxn Rule 9: 832 reactions 3.32e+00 CPU s 3.99e-03 CPU s/rxn Rule 10: 48 reactions 3.60e-01 CPU s 7.50e-03 CPU s/rxn Rule 11: 48 reactions 3.40e-01 CPU s 7.08e-03 CPU s/rxn Rule 12: 64 reactions 5.90e-01 CPU s 9.22e-03 CPU s/rxn Rule 13: 64 reactions 4.80e-01 CPU s 7.50e-03 CPU s/rxn Rule 14: 156 reactions 5.10e-01 CPU s 3.27e-03 CPU s/rxn Rule 15: 104 reactions 3.20e-01 CPU s 3.08e-03 CPU s/rxn Rule 16: 208 reactions 8.10e-01 CPU s 3.89e-03 CPU s/rxn Rule 17: 208 reactions 7.70e-01 CPU s 3.70e-03 CPU s/rxn Rule 18: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Rule 19: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn Total : 3680 reactions 1.60e+01 CPU s 4.35e-03 CPU s/rxn Wrote network in net format to ./fceri_ji.net. CPU TIME: generate_network 16.46 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./fceri_ji.net. Wrote network in net format to ./fceri_ji.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10 [simulation PID is: 15384] run_network 3.0 BUILDSTDERR: Read 26 parCan't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. BUILDSTDERR: Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. ameters from ./fceri_ji.net Read 354 species from ./fceri_ji.net Read 10 group(s) from ./fceri_ji.net Read 0 function(s) from ./fceri_ji.net Read 3680 reaction(s) from ./fceri_ji.net Removed 600 reactions with zero rate 3080 reaction(s) have nonzero rate Initialization took 0.07 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./fceri_ji.cdat. Time course of groups written to file ./fceri_ji.gdat. Propagation took 1.98e+00 CPU seconds Program times: 2.05 CPU s 2.00 clock s Updating species concentrations from ./fceri_ji.cdat CPU TIME: simulate 2.41 s. Finished processing file fceri_ji.bngl. CPU TIME: total 18.98 s. BioNetGen version 2.5.0 Reading from file test_continue.bngl (level 0) Read 19 parameters. Read 5 molecule types. Read 4 species. Read 6 observable(s). Read 6 reaction rule(s). ACTION: generate_network( test_continue ) Iteration 0: 4 species 0 rxns 0.00e+00 CPU s Iteration 1: 6 species 2 rxns 1.00e-02 CPU s Iteration 2: 7 species 5 rxns 1.00e-02 CPU s Iteration 3: 8 species 7 rxns 1.00e-02 CPU s Iteration 4: 12 species 12 rxns 2.00e-02 CPU s Iteration 5: 17 species 30 rxns 8.00e-02 CPU s Iteration 6: 22 species 59 rxns 1.10e-01 CPU s Iteration 7: 22 species 76 rxns 9.00e-02 CPU s Cumulative CPU time for each rule Rule 1: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn Rule 2: 20 reactions 1.00e-01 CPU s 5.00e-03 CPU s/rxn Rule 3: 4 reactions 2.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 4: 6 reactions 3.00e-02 CPU s 5.00e-03 CPU s/rxn Rule 5: 24 reactions 9.00e-02 CPU s 3.75e-03 CPU s/rxn Rule 6: 14 reactions 6.00e-02 CPU s 4.29e-03 CPU s/rxn Total : 76 reactions 3.10e-01 CPU s 4.08e-03 CPU s/rxn Wrote network in net format to ./test_continue.net. CPU TIME: generate_network 0.35 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 15386] run_network 3.0 Read 19 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.02 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 15388] run_network 3.0 Read 20 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 1.00e-02 CPU seconds Program times: 0.01 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.03 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"cvode" ) Network simulation using cvode WARNING: writeFile(): Overwriting existing file ./test_continue.net. Wrote network in net format to ./test_continue.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40 [simulation PID is: 15390] run_network 3.0 Read 21 parameters from ./test_continue.net Read 22 species from ./test_continue.net Read 6 group(s) from ./test_continue.net Read 0 function(s) from ./test_continue.net Read 76 reaction(s) from ./test_continue.net 76 reaction(s) have nonzero rate Initialization took 0.00 CPU seconds Propagating with cvode using dense LU Time course of concentrations written to file ./test_continue.cdat. Time course of groups written to file ./test_continue.gdat. Propagation took 0.00e+00 CPU seconds Program times: 0.00 CPU s 0.00 clock s Updating species concentrations from ./test_continue.cdat CPU TIME: simulate 0.03 s. Reset species concentrations to "DEFAULT" saved values. CPU TIME: resetConcentrations 0.00 s. Set concentration of species EGF(R) to value EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa Wrote network in net format to ./test_continue_ssa.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./test_continue_ssa -p ssa -h 731991722 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 15392] run_network 3.0 Read 21 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 71421 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 4.00e-02 CPU seconds Program times: 0.04 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.08 s. Set concentration of species EGF(R) to value 10*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./test_continue_ssa -p ssa -h 1096754191 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 15394] run_network 3.0 Read 22 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 129858 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 9.00e-02 CPU seconds Program times: 0.09 CPU s 0.00 clock s BUILDSTDERR: Updating species concentrations from ./test_continue_Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/Perl2/BNGAction.pm line 547. + echo 'Tests finished.' + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 ssa.cdat CPU TIME: simulate 0.12 s. Set concentration of species EGF(R) to value 0.1*EGF_init CPU TIME: setConcentration 0.00 s. ACTION: simulate( method=>"ssa" ) Network simulation using ssa WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net. Wrote network in net format to ./test_continue_ssa.net. Running run_network on full command: /builddir/build/BUILD/bionetgen-2.5.0/bionetgen-BioNetGen-2.5.0/bng2/bin/run_network_ppc64le-linux -o ./test_continue_ssa -p ssa -h 389765409 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40 [simulation PID is: 15396] run_network 3.0 Read 23 parameters from ./test_continue_ssa.net Read 22 species from ./test_continue_ssa.net Read 6 group(s) from ./test_continue_ssa.net Read 0 function(s) from ./test_continue_ssa.net Read 76 reaction(s) from ./test_continue_ssa.net 76 reaction(s) have nonzero rate rxn_rate_update_interval=1 Average number of update rxns is 14.17 Initialization took 0.00 CPU seconds Stochastic simulation using direct Gillespie algorithm TOTAL STEPS: 106751 Time course of concentrations written to file ./test_continue_ssa.cdat. Time course of groups written to file ./test_continue_ssa.gdat. Propagation took 8.00e-02 CPU seconds Program times: 0.08 CPU s 0.00 clock s Updating species concentrations from ./test_continue_ssa.cdat CPU TIME: simulate 0.10 s. Finished processing file test_continue.bngl. CPU TIME: total 0.77 s. Tests finished. Processing files: bionetgen-2.5.0-3.fc31.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FovYlb + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/doc/bionetgen + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/README.md /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/doc/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/doc/bionetgen + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.xR4Wca + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/licenses/bionetgen + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/licenses/bionetgen + cp -pr bionetgen-BioNetGen-2.5.0/LICENSE /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le/usr/share/licenses/bionetgen + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Provides: bionetgen = 2.5.0-3.fc31 bionetgen(ppc-64) = 2.5.0-3.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: bionetgen-perl-2.5.0-3.fc31.noarch Provides: bionetgen-perl = 2.5.0-3.fc31 perl(Viz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings) Processing files: bionetgen-debugsource-2.5.0-3.fc31.ppc64le Provides: bionetgen-debugsource = 2.5.0-3.fc31 bionetgen-debugsource(ppc-64) = 2.5.0-3.fc31 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bionetgen-debuginfo-2.5.0-3.fc31.ppc64le Provides: bionetgen-debuginfo = 2.5.0-3.fc31 bionetgen-debuginfo(ppc-64) = 2.5.0-3.fc31 debuginfo(build-id) = 66f25d25ce682fd22ad56e8d8c694d8a43b5d8ab Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bionetgen-debugsource(ppc-64) = 2.5.0-3.fc31 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.5.0-3.fc31.ppc64le.rpm Wrote: /builddir/build/RPMS/bionetgen-2.5.0-3.fc31.ppc64le.rpm Wrote: /builddir/build/RPMS/bionetgen-perl-2.5.0-3.fc31.noarch.rpm Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.5.0-3.fc31.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.lMfKK9 + umask 022 + cd /builddir/build/BUILD + cd bionetgen-2.5.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.5.0-3.fc31.ppc64le + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Child return code was: 0