Mock Version: 2.12
Mock Version: 2.12
Mock Version: 2.12
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/f36-build-31171661-4260624/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f24b23081f0>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target i686 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1635897600
Wrote: /builddir/build/SRPMS/R-4.1.2-1.fc36.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/f36-build-31171661-4260624/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f24b23081f0>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target i686 --nodeps /builddir/build/SPECS/R.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: i686
Building for target i686
setting SOURCE_DATE_EPOCH=1635897600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OuWj9w
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf R-4.1.2
+ /usr/bin/gzip -dc /builddir/build/SOURCES/R-4.1.2.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd R-4.1.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch):
+ echo 'Patch #1 (R-3.3.0-fix-java_path-in-javareconf.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fixpath --fuzz=0
patching file src/scripts/javareconf.in
Hunk #1 succeeded at 79 (offset 1 line).
+ cat
+ chmod +x /builddir/build/BUILD/R-4.1.2/R-prov
+ cat
+ chmod +x /builddir/build/BUILD/R-4.1.2/R-req
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ZXyCle
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-4.1.2
+ echo 'R_LIBS_SITE=${R_LIBS_SITE-'\''/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library:/usr/share/R/library'\''}'
+ export R_PDFVIEWER=/usr/bin/xdg-open
+ R_PDFVIEWER=/usr/bin/xdg-open
+ export R_PRINTCMD=lpr
+ R_PRINTCMD=lpr
+ export R_BROWSER=/usr/bin/xdg-open
+ R_BROWSER=/usr/bin/xdg-open
+ case "i686" in
+ export 'CC=gcc -m32'
+ CC='gcc -m32'
+ export 'CXX=g++ -m32'
+ CXX='g++ -m32'
+ export 'F77=gfortran -m32'
+ F77='gfortran -m32'
+ export 'FC=gfortran -m32'
+ FC='gfortran -m32'
+ export 'FCFLAGS=-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls'
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls'
+ export 'FFLAGS=-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls'
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls'
+ sed -i '/"checking whether the BLAS is complete/i r_cv_complete_blas=yes' configure
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ tee CONFIGURE.log
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls'
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC='gcc -m32'
+ export CC
+ CXX='g++ -m32'
+ export CXX
+ '[' x '!=' x ']'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./tools/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./tools/config.guess
++ basename ./tools/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./tools/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './tools/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./tools/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./tools/config.sub
++ basename ./tools/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./tools/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './tools/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./tools/ltmain.sh
+ ./configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-system-tre --with-system-valgrind-headers --with-lapack --with-blas=flexiblas --with-tcl-config=/usr/lib/tclConfig.sh --with-tk-config=/usr/lib/tkConfig.sh --enable-R-shlib --enable-prebuilt-html --enable-R-profiling --enable-memory-profiling MAKEINFO=texi2any rdocdir=/usr/share/doc/R rincludedir=/usr/include/R rsharedir=/usr/share/R
configure: WARNING: unrecognized options: --disable-dependency-tracking
checking build system type... i686-redhat-linux-gnu
checking host system type... i686-redhat-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /usr/bin/pwd
checking whether builddir is srcdir... yes
checking whether ln -s works... yes
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... /usr/bin/gtar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... /usr/sbin/install-info
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for bzip2... /usr/bin/bzip2
using default browser ... /usr/bin/xdg-open
checking for /usr/bin/xdg-open... /usr/bin/xdg-open
checking for working aclocal... found
checking for working autoconf... found
checking for working autoheader... found
checking for bison... no
checking for byacc... no
checking for yacc... no
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for i686-redhat-linux-gnu-gcc... gcc -m32
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc -m32 accepts -g... yes
checking for gcc -m32 option to enable C11 features... none needed
checking how to run the C preprocessor... gcc -m32 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether gcc -m32 needs -traditional... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for wchar.h... yes
checking for minix/config.h... no
checking for sys/time.h... yes
checking for sys/param.h... yes
checking whether it is safe to define __EXTENSIONS__... yes
checking whether _XOPEN_SOURCE should be defined... no
checking how to run the C preprocessor... gcc -m32 -E
looking for a modern Fortran compiler
checking for i686-redhat-linux-gnu-gfortran... gfortran -m32
checking whether the compiler supports GNU Fortran... yes
checking whether gfortran -m32 accepts -g... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ -m32 accepts -g... yes
checking for g++ -m32 option to enable C++11 features... none needed
checking whether g++ -m32 -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection can compile C++ code... yes
checking how to run the C++ preprocessor... g++ -m32 -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -m32 accepts -fvisibility... yes
checking whether g++ -m32 accepts -fvisibility... yes
checking whether gfortran -m32 accepts -fvisibility... yes
checking for i686-redhat-linux-gnu-gcc... no
checking for i686-redhat-linux-gnu-objcc... no
checking for i686-redhat-linux-gnu-objc... no
checking for i686-redhat-linux-gnu-cc... no
checking for i686-redhat-linux-gnu-CC... no
checking for i686-redhat-linux-gnu-clang... no
checking for gcc... gcc
checking whether the compiler supports GNU Objective C... no
checking whether gcc accepts -g... no
checking whether g++ -m32 can compile ObjC++... no
checking whether  can compile ObjC++... no
checking for Objective C++ compiler... no working ObjC++ compiler found
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc -m32... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert i686-redhat-linux-gnu file names to i686-redhat-linux-gnu format... func_convert_file_noop
checking how to convert i686-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for i686-redhat-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for i686-redhat-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for i686-redhat-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for i686-redhat-linux-gnu-strip... no
checking for strip... strip
checking for i686-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for gawk... gawk
checking command to parse /usr/bin/nm -B output from gcc -m32 object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for i686-redhat-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc -m32 supports -fno-rtti -fno-exceptions... no
checking for gcc -m32 option to produce PIC... -fPIC -DPIC
checking if gcc -m32 PIC flag -fPIC -DPIC works... yes
checking if gcc -m32 static flag -static works... no
checking if gcc -m32 supports -c -o file.o... yes
checking if gcc -m32 supports -c -o file.o... (cached) yes
checking whether the gcc -m32 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -m32 -E
checking for ld used by g++ -m32... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ -m32 linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ -m32 option to produce PIC... -fPIC -DPIC
checking if g++ -m32 PIC flag -fPIC -DPIC works... yes
checking if g++ -m32 static flag -static works... no
checking if g++ -m32 supports -c -o file.o... yes
checking if g++ -m32 supports -c -o file.o... (cached) yes
checking whether the g++ -m32 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran -m32 option to produce PIC... -fPIC
checking if gfortran -m32 PIC flag -fPIC works... yes
checking if gfortran -m32 static flag -static works... no
checking if gfortran -m32 supports -c -o file.o... yes
checking if gfortran -m32 supports -c -o file.o... (cached) yes
checking whether the gfortran -m32 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking for readline/history.h... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for tilde_expand_word... yes
checking whether rl_completion_matches exists and is declared... yes
checking whether rl_resize_terminal exists and is declared... yes
checking whether rl_sort_completion_matches exists and is declared... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for dlfcn.h... (cached) yes
checking for fcntl.h... yes
checking for glob.h... yes
checking for grp.h... yes
checking for pwd.h... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking for sys/resource.h... yes
checking for sys/select.h... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking for sys/time.h... (cached) yes
checking for sys/times.h... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking for utime.h... yes
checking for arpa/inet.h... yes
checking for elf.h... yes
checking for features.h... yes
checking for floatingpoint.h... no
checking for langinfo.h... yes
checking for netdb.h... yes
checking for netinet/in.h... yes
checking for sys/param.h... (cached) yes
checking for stdalign.h... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... yes
checking for locale.h... yes
checking for stdarg.h... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for gcc -m32 options needed to detect all undeclared functions... none needed
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking for C stack direction... down
checking size of long double... 12
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -m32 supports -c -o FILE.lo... yes
checking for gcc -m32 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran -m32... -v
checking for Fortran libraries of gfortran -m32...  -L/usr/lib/gcc/i686-redhat-linux/11 -L/usr/lib/gcc/i686-redhat-linux/11/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc -m32... -v
checking for C libraries of gcc -m32...  -L/usr/lib/gcc/i686-redhat-linux/11 -L/usr/lib/gcc/i686-redhat-linux/11/../../.. -lgcc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran -m32 appends underscores to external names... yes
checking whether gfortran -m32 appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran -m32 and gcc -m32 agree on int and double... yes
checking whether gfortran -m32 and gcc -m32 agree on double complex... yes
checking for gfortran -m32 option to support OpenMP... -fopenmp
checking whether g++ -m32 accepts -M for generating dependencies... yes
checking whether we can compute ObjC Make dependencies... no
checking if need -fno-optimize-sibling-calls for gfortran... yes
checking for type of 'hidden' Fortran character lengths... size_t
checking for xmkmf... no
checking whether g++ -m32  supports C++11 features with -std=gnu++11... yes
checking whether g++ -m32  supports C++14 features with -std=gnu++14... yes
checking whether g++ -m32  supports C++17 features with -std=gnu++17... yes
checking whether g++ -m32  supports C++20 features with -std=gnu++20... yes
checking for g++ -m32 -std=gnu++14 option to support OpenMP... -fopenmp
checking for option providing pthread_kill... none required
checking whether POSIX threads are supported... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for __cospi... no
checking for __sinpi... no
checking for __tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... no
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwnam exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether getline exists and is declared... yes
checking whether select exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether setrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether utimensat exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for dladdr... yes
checking for dlsym... yes
checking whether dladdr is declared... yes
checking whether dlsym is declared... yes
checking whether RTLD_DEFAULT is declared... yes
checking whether RTLD_NEXT is declared... yes
checking for thread.h... no
checking whether thr_stksegment exists and is declared... no
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... yes
checking whether mktime works correctly outside 1902-2037... no
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for working ctanh... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_ in -lflexiblas... yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... (cached) yes
checking for dpstrf_... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking whether iconv accepts "CP1252"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for wchar.h... (cached) yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking whether wcwidth exists and is declared... yes
checking whether wcswidth exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... yes
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for /usr/lib/tclConfig.sh... /usr/lib/tclConfig.sh
checking for /usr/lib/tkConfig.sh... /usr/lib/tkConfig.sh
checking for tcl.h... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking for rpc/types.h... no
checking for tirpc/rpc/types.h... no
checking for XDR support... no
checking for inflateInit2_ in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support suffices... yes
checking for BZ2_bzlibVersion in -lbz2... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support suffices... yes
checking for lzma_version_number in -llzma... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre2.h... yes
checking for pcre2_compile_8 in -lpcre2-8... yes
checking if PCRE2 has Unicode support... yes
checking whether PCRE support suffices... yes
checking for tre_regncompb in -ltre... yes
checking for tre/tre.h... yes
checking for curl-config... /usr/bin/curl-config
checking libcurl version ... 7.80.0
checking for curl/curl.h... yes
checking if libcurl is version 7 and >= 7.28.0... yes
checking if libcurl supports https... yes
checking if pkg-config knows about libjpeg... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking if pkg-config knows about libpng... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking if pkg-config knows about libtiff... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran -m32 option to support OpenMP... (cached) -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes
Configuring src/extra/intl directory
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for i686-redhat-linux-gnu-ranlib... ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc -m32... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... no
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory
checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands
configure: WARNING: unrecognized options: --disable-dependency-tracking
R is now configured for i686-redhat-linux-gnu
  Source directory:            .
  Installation directory:      /usr
  C compiler:                  gcc -m32  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
  Fortran fixed-form compiler: gfortran -m32 -fno-optimize-sibling-calls -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls
  Default C++ compiler:        g++ -m32 -std=gnu++14  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
  C++11 compiler:              g++ -m32 -std=gnu++11  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
  C++14 compiler:              g++ -m32 -std=gnu++14  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
  C++17 compiler:              g++ -m32 -std=gnu++17  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
  C++20 compiler:              g++ -m32 -std=gnu++20  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
  Fortran free-form compiler:  gfortran -m32 -fno-optimize-sibling-calls -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls
  Obj-C compiler:	        
  Interfaces supported:        X11, tcltk
  External libraries:          pcre2, readline, BLAS(generic), LAPACK(in blas), tre, curl
  Additional capabilities:     PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:             shared R library, R profiling, memory profiling, static HTML
  Capabilities skipped:        
  Options not enabled:         shared BLAS
  Recommended packages:        yes
+ cat CONFIGURE.log
+ grep -A30 'R is now' -
+ make V=1
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/m4'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/m4'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tools'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tools'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/html'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/html'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/etc'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/etc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/share'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/share'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/scripts'
creating src/scripts/R.fe
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/scripts'
mkdir -p -- ../../bin
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/scripts'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/scripts'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include'
mkdir -p -- ../../include
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr'
making xdr.d from xdr.c
making xdr_float.d from xdr_float.c
making xdr_mem.d from xdr_mem.c
making xdr_stdio.d from xdr_stdio.c
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr'
gcc -m32 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -fvisibility=hidden -c xdr.c -o xdr.o
gcc -m32 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -fvisibility=hidden -c xdr_float.c -o xdr_float.o
gcc -m32 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -fvisibility=hidden -c xdr_mem.c -o xdr_mem.o
gcc -m32 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -fvisibility=hidden -c xdr_stdio.c -o xdr_stdio.o
ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o
ranlib libxdr.a
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/appl'
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c integrate.c -o integrate.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c interv.c -o interv.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c maxcol.c -o maxcol.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c optim.c -o optim.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pretty.c -o pretty.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c uncmin.c -o uncmin.o
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dchdc.f -o dchdc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dpbfa.f -o dpbfa.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dpbsl.f -o dpbsl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dpoco.f -o dpoco.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dpodi.f -o dpodi.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dpofa.f -o dpofa.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dposl.f -o dposl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dqrdc.f -o dqrdc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dqrdc2.f -o dqrdc2.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dqrls.f -o dqrls.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dqrsl.f -o dqrsl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dqrutl.f -o dqrutl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dsvdc.f -o dsvdc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dtrco.f -o dtrco.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dtrsl.f -o dtrsl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o  
ranlib libappl.a
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/appl'
#@make install-Linpack
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/appl'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath'
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mlutils.c -o mlutils.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c d1mach.c -o d1mach.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c i1mach.c -o i1mach.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fmax2.c -o fmax2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fmin2.c -o fmin2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fprec.c -o fprec.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fround.c -o fround.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ftrunc.c -o ftrunc.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sign.c -o sign.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fsign.c -o fsign.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c imax2.c -o imax2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c imin2.c -o imin2.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chebyshev.c -o chebyshev.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c log1p.c -o log1p.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lgammacor.c -o lgammacor.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gammalims.c -o gammalims.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c stirlerr.c -o stirlerr.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bd0.c -o bd0.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gamma.c -o gamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lgamma.c -o lgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gamma_cody.c -o gamma_cody.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c beta.c -o beta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lbeta.c -o lbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c polygamma.c -o polygamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cospi.c -o cospi.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bessel_i.c -o bessel_i.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bessel_j.c -o bessel_j.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bessel_k.c -o bessel_k.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bessel_y.c -o bessel_y.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c choose.c -o choose.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c snorm.c -o snorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sexp.c -o sexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dgamma.c -o dgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pgamma.c -o pgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qgamma.c -o qgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rgamma.c -o rgamma.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dbeta.c -o dbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pbeta.c -o pbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qbeta.c -o qbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rbeta.c -o rbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dunif.c -o dunif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c punif.c -o punif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qunif.c -o qunif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c runif.c -o runif.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dnorm.c -o dnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pnorm.c -o pnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qnorm.c -o qnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rnorm.c -o rnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dlnorm.c -o dlnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c plnorm.c -o plnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qlnorm.c -o qlnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rlnorm.c -o rlnorm.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c df.c -o df.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pf.c -o pf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qf.c -o qf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rf.c -o rf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dnf.c -o dnf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dt.c -o dt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pt.c -o pt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qt.c -o qt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rt.c -o rt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dnt.c -o dnt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dchisq.c -o dchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pchisq.c -o pchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qchisq.c -o qchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rchisq.c -o rchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rnchisq.c -o rnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dbinom.c -o dbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pbinom.c -o pbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qbinom.c -o qbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rbinom.c -o rbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rmultinom.c -o rmultinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dcauchy.c -o dcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pcauchy.c -o pcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qcauchy.c -o qcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rcauchy.c -o rcauchy.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dexp.c -o dexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pexp.c -o pexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qexp.c -o qexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rexp.c -o rexp.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dgeom.c -o dgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pgeom.c -o pgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qgeom.c -o qgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rgeom.c -o rgeom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dhyper.c -o dhyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c phyper.c -o phyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qhyper.c -o qhyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rhyper.c -o rhyper.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dnbinom.c -o dnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pnbinom.c -o pnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qnbinom.c -o qnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qnbinom_mu.c -o qnbinom_mu.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rnbinom.c -o rnbinom.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dpois.c -o dpois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ppois.c -o ppois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qpois.c -o qpois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rpois.c -o rpois.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dweibull.c -o dweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pweibull.c -o pweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qweibull.c -o qweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rweibull.c -o rweibull.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dlogis.c -o dlogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c plogis.c -o plogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qlogis.c -o qlogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rlogis.c -o rlogis.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dnchisq.c -o dnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pnchisq.c -o pnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qnchisq.c -o qnchisq.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dnbeta.c -o dnbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pnbeta.c -o pnbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qnbeta.c -o qnbeta.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pnf.c -o pnf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pnt.c -o pnt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qnf.c -o qnf.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qnt.c -o qnt.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ptukey.c -o ptukey.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qtukey.c -o qtukey.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c toms708.c -o toms708.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c wilcox.c -o wilcox.o
gcc -m32 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix'
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Rembedded.c -o Rembedded.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dynload.c -o dynload.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c system.c -o system.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sys-unix.c -o sys-unix.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sys-std.c -o sys-std.o
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix'
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -DR_HOME='"/builddir/build/BUILD/R-4.1.2"' \
  -o Rscript ./Rscript.c
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making altclasses.d from altclasses.c
making altrep.d from altrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making patterns.d from patterns.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making radixsort.d from radixsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c CommandLineArgs.c -o CommandLineArgs.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Rdynload.c -o Rdynload.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Renviron.c -o Renviron.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c RNG.c -o RNG.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agrep.c -o agrep.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c altclasses.c -o altclasses.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c altrep.c -o altrep.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c apply.c -o apply.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c arithmetic.c -o arithmetic.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c array.c -o array.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c attrib.c -o attrib.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bind.c -o bind.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c builtin.c -o builtin.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c character.c -o character.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coerce.c -o coerce.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c colors.c -o colors.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c complex.c -o complex.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c connections.c -o connections.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c context.c -o context.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cum.c -o cum.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dcf.c -o dcf.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c datetime.c -o datetime.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c debug.c -o debug.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c deparse.c -o deparse.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c devices.c -o devices.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dotcode.c -o dotcode.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dounzip.c -o dounzip.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dstruct.c -o dstruct.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c duplicate.c -o duplicate.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c edit.c -o edit.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c engine.c -o engine.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c envir.c -o envir.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c errors.c -o errors.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c eval.c -o eval.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c format.c -o format.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gevents.c -o gevents.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gram.c -o gram.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gram-ex.c -o gram-ex.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c graphics.c -o graphics.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c grep.c -o grep.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c identical.c -o identical.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c inlined.c -o inlined.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c inspect.c -o inspect.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c internet.c -o internet.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c iosupport.c -o iosupport.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lapack.c -o lapack.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c list.c -o list.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c localecharset.c -o localecharset.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c logic.c -o logic.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c main.c -o main.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mapply.c -o mapply.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c match.c -o match.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c memory.c -o memory.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c names.c -o names.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c objects.c -o objects.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c options.c -o options.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c paste.c -o paste.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c patterns.c -o patterns.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c platform.c -o platform.o
In file included from /usr/include/stdlib.h:1027,
                 from ../../src/include/Defn.h:246,
                 from platform.c:41:
In function 'realpath',
    inlined from 'do_eSoftVersion' at platform.c:3426:14:
/usr/include/bits/stdlib.h:46:12: warning: call to '__realpath_chk_warn' declared with attribute warning: second argument of realpath must be either NULL or at least PATH_MAX bytes long buffer [-Wattribute-warning]
   46 |     return __realpath_chk_warn (__name, __resolved, sz);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c plot.c -o plot.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c plot3d.c -o plot3d.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c plotmath.c -o plotmath.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c print.c -o print.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c printarray.c -o printarray.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c printvector.c -o printvector.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c printutils.c -o printutils.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qsort.c -o qsort.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c radixsort.c -o radixsort.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c random.c -o random.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c raw.c -o raw.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c registration.c -o registration.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c relop.c -o relop.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rlocale.c -o rlocale.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c saveload.c -o saveload.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c scan.c -o scan.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c seq.c -o seq.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c serialize.c -o serialize.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sort.c -o sort.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c source.c -o source.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c split.c -o split.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sprintf.c -o sprintf.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c startup.c -o startup.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c subassign.c -o subassign.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c subscript.c -o subscript.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c subset.c -o subset.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c summary.c -o summary.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sysutils.c -o sysutils.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c times.c -o times.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c unique.c -o unique.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c util.c -o util.o
In file included from /usr/include/stdlib.h:1027,
                 from ../../src/include/Defn.h:246,
                 from util.c:26:
In function 'realpath',
    inlined from 'do_normalizepath' at util.c:1007:18:
/usr/include/bits/stdlib.h:46:12: warning: call to '__realpath_chk_warn' declared with attribute warning: second argument of realpath must be either NULL or at least PATH_MAX bytes long buffer [-Wattribute-warning]
   46 |     return __realpath_chk_warn (__name, __resolved, sz);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c version.c -o version.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c g_alab_her.c -o g_alab_her.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c g_cntrlify.c -o g_cntrlify.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c g_fontdb.c -o g_fontdb.o
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c g_her_glyph.c -o g_her_glyph.o
gfortran -m32 -fno-optimize-sibling-calls -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c xxxpr.f -o xxxpr.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gcc -m32 -shared -fopenmp -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1   -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`  ../extra/xdr/libxdr.a   -lflexiblas -lgfortran -lm -lquadmath   -lreadline  -ltre -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n  
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
mkdir -p -- /builddir/build/BUILD/R-4.1.2/bin/exec
mkdir -p -- /builddir/build/BUILD/R-4.1.2/lib
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
gcc -m32  -I../../src/extra/xdr -I. -I../../src/include -I../../src/include  -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Rmain.c -o Rmain.o
gcc -m32 -Wl,--export-dynamic -fopenmp  -L"../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o R.bin Rmain.o  -lR 
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c internet.c -o internet.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c sock.c -o sock.o
gcc -m32 -I. -I../../../src/include -I../../../src/include  -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection   -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -m32 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR  
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
mkdir -p -- /builddir/build/BUILD/R-4.1.2/modules
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
making Lapack.d from Lapack.c
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Lapack.c -o Lapack.o
In file included from /usr/include/stdlib.h:1027,
                 from ../../../src/include/Defn.h:246,
                 from Lapack.c:27:
In function 'realpath',
    inlined from 'mod_do_lapack' at Lapack.c:1388:18:
/usr/include/bits/stdlib.h:46:12: warning: call to '__realpath_chk_warn' declared with attribute warning: second argument of realpath must be either NULL or at least PATH_MAX bytes long buffer [-Wattribute-warning]
   46 |     return __realpath_chk_warn (__name, __resolved, sz);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -m32 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o lapack.so  Lapack.o  -lR   -lflexiblas -lgfortran -lm -lquadmath
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
gcc -m32 -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c devX11.c -o devX11.o
gcc -m32 -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rotated.c -o rotated.o
gcc -m32 -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rbitmap.c -o rbitmap.o
gcc -m32 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff  -ljpeg  -lpng16 -lz  -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext  -lX11 -lXt -lXmu  -lR -lm 
gcc -m32 -I/usr/include/libpng16   -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dataentry.c -o dataentry.o
gcc -m32 -shared -L"../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext  -lX11 -lXt -lXmu  -lR -lm 
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
mkdir -p -- ../../library
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/profile'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/translations'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/translations'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/translations'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
building package 'base'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
mkdir -p -- ../../../library/base/demo
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making pdscan.d from pdscan.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c text.c -o text.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Rmd5.c -o Rmd5.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c md5.c -o md5.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c signals.c -o signals.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c install.c -o install.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c getfmts.c -o getfmts.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c http.c -o http.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gramLatex.c -o gramLatex.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gramRd.c -o gramRd.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pdscan.c -o pdscan.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
installing 'sysdata.rda'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler'
byte-compiling package 'compiler'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/compiler'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
byte-compiling package 'base'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
byte-compiling package 'tools'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tools'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c io.c -o io.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c size.c -o size.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sock.c -o sock.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c stubs.c -o stubs.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c utils.c -o utils.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
installing 'sysdata.rda'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
byte-compiling package 'utils'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/utils'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making clippath.d from clippath.c
making patterns.d from patterns.c
making mask.d from mask.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c axis_scales.c -o axis_scales.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chull.c -o chull.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c devices.c -o devices.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c stubs.c -o stubs.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c colors.c -o colors.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c clippath.c -o clippath.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c patterns.c -o patterns.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mask.c -o mask.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c devCairo.c -o devCairo.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c devPicTeX.c -o devPicTeX.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c devPS.c -o devPS.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c devQuartz.c -o devQuartz.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[7]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[8]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo'
make[9]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo'
gcc -m32 -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/sysprof-4 -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cairoBM.c -o cairoBM.o
gcc -m32 -shared -L"../../../../../lib" -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff  -ljpeg  -lpng16 -lz  -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo  -L"../../../../../lib" -lR -lm 
make[9]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src/cairo'
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
byte-compiling package 'grDevices'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grDevices'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c base.c -o base.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c graphics.c -o graphics.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c par.c -o par.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c plot.c -o plot.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c plot3d.c -o plot3d.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c stem.c -o stem.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
byte-compiling package 'graphics'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/graphics'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c kmeans.c -o kmeans.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ansari.c -o ansari.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bandwidths.c -o bandwidths.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chisqsim.c -o chisqsim.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c d2x2xk.c -o d2x2xk.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fexact.c -o fexact.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c kendall.c -o kendall.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ks.c -o ks.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c line.c -o line.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c smooth.c -o smooth.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c prho.c -o prho.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c swilk.c -o swilk.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ksmooth.c -o ksmooth.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c loessc.c -o loessc.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c monoSpl.c -o monoSpl.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c isoreg.c -o isoreg.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Srunmed.c -o Srunmed.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dblcen.c -o dblcen.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c distance.c -o distance.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c hclust-utils.c -o hclust-utils.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c nls.c -o nls.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rWishart.c -o rWishart.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c HoltWinters.c -o HoltWinters.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c PPsum.c -o PPsum.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c arima.c -o arima.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c burg.c -o burg.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c filter.c -o filter.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mAR.c -o mAR.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pacf.c -o pacf.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c starma.c -o starma.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c port.c -o port.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c family.c -o family.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sbart.c -o sbart.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c approx.c -o approx.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c loglin.c -o loglin.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lowess.c -o lowess.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c massdist.c -o massdist.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c splines.c -o splines.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lm.c -o lm.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c complete_cases.c -o complete_cases.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cov.c -o cov.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c deriv.c -o deriv.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fft.c -o fft.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fourier.c -o fourier.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c model.c -o model.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c optim.c -o optim.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c optimize.c -o optimize.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c integrate.c -o integrate.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c random.c -o random.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c distn.c -o distn.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c zeroin.c -o zeroin.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rcont.c -o rcont.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fopenmp -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c influence.c -o influence.o
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c bsplvd.f -o bsplvd.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c bvalue.f -o bvalue.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c bvalus.f -o bvalus.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c loessf.f -o loessf.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c ppr.f -o ppr.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c qsbart.f -o qsbart.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c sgram.f -o sgram.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c sinerp.f -o sinerp.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c sslvrg.f -o sslvrg.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c stxwx.f -o stxwx.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c hclust.f -o hclust.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c kmns.f -o kmns.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c eureka.f -o eureka.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c stl.f -o stl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls -msse2 -mfpmath=sse  -c portsrc.f -o portsrc.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
portsrc.f:6663:72:
 6663 |          NCOMP = NCOMP + 1
      |                                                                        ^
Warning: 'ncomp' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:6683:72:
 6683 |          JPU = JPNTR(JCOL+1) - 1
      |                                                                        ^
Warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:5521:51:
 5521 |       IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
      |                                                   ^
Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:5658:18:
 5658 |               IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310
      |                  ^
Warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10329:55:
10329 |       IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK)
      |                                                       ^
Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10412:72:
10412 |       V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA)
      |                                                                        ^
Warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10324:72:
10324 |       LK = DMAX1(LK, PHI*W(PHIPIN))
      |                                                                        ^
Warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:10466:10:
10466 |       IF (KA .GE. KAMIN) GO TO 340
      |          ^
Warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:12243:72:
12243 |       V(NREDUC) = NRED
      |                                                                        ^
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:12246:72:
12246 |       V(DST0) = DNWTST
      |                                                                        ^
Warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:2515:72:
 2515 |       V(NREDUC) = NRED
      |                                                                        ^
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:2514:72:
 2514 |  60   V(DST0) = DS0
      |                                                                        ^
Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:8174:72:
 8174 |       V(NREDUC) = NRED
      |                                                                        ^
Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:8173:72:
 8173 |  90   V(DST0) = DS0
      |                                                                        ^
Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:8652:72:
 8652 |  210  IV(FDH) = HES
      |                                                                        ^
Warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:3587:10:
 3587 |       IF (LIV .LT. MIV2) GO TO 300
      |          ^
Warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:12079:72:
12079 |  270  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
      |                                                                        ^
Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:458:72:
  458 |  300  CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X)
      |                                                                        ^
Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:366:72:
  366 |       CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1))
      |                                                                        ^
Warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized]
portsrc.f:366:72: Warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -m32 -fno-optimize-sibling-calls -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c lminfl.f -o lminfl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lflexiblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
byte-compiling package 'stats'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/datasets'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c do_substitute_direct.c -o do_substitute_direct.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c slot.c -o slot.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c class_support.c -o class_support.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c tests.c -o tests.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c utils.c -o utils.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
byte-compiling package 'methods'
initializing class and method definitions ... done
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/methods'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src'
making clippath.d from clippath.c
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making mask.d from mask.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c clippath.c -o clippath.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gpar.c -o gpar.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c grid.c -o grid.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c just.c -o just.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c layout.c -o layout.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mask.c -o mask.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c matrix.c -o matrix.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c register.c -o register.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c state.c -o state.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c unit.c -o unit.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c util.c -o util.o
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c viewport.c -o viewport.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
byte-compiling package 'grid'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/grid'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src'
making splines.d from splines.c
gcc -m32 -I"../../../../include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c splines.c -o splines.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o splines.so splines.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
byte-compiling package 'splines'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/splines'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4'
byte-compiling package 'stats4'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/stats4'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c tcltk.c -o tcltk.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c tcltk_unix.c -o tcltk_unix.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib -ltcl8.6 -L/usr/lib -ltk8.6 -lX11 -lm -L../../../../lib -lR
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk/src'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk'
byte-compiling package 'tcltk'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/tcltk'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
make[5]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rngstream.c -o rngstream.o
gcc -m32 -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H  -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fork.c -o fork.o
gcc -m32 -shared -L../../../../lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[6]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[6]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src'
make[5]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel/src'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
byte-compiling package 'parallel'
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/parallel'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/base'
installing parsed NAMESPACE files
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
make[1]: Nothing to be done for 'R'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
you should 'make docs' now ...
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc'
creating doc/NEWS
creating doc/NEWS.pdf
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/html'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/html'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
installing parsed Rd
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
building/updating package metadata ...
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
writing package indices
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
building all R object docs
  converting help for package 'base'
    Arithmetic                              html  
    AsIs                                    html  
    Bessel                                  html  
    CallExternal                            html  
    Colon                                   html  
    Comparison                              html  
    Constants                               html  
    Control                                 html  
    Cstack_info                             html  
    DateTimeClasses                         html  
    Dates                                   html  
    Defunct                                 html  
    Deprecated                              html  
    Encoding                                html  
    EnvVar                                  html  
    Extract                                 html  
    Extract.data.frame                      html  
    Extract.factor                          html  
    Extremes                                html  
    Foreign-internal                        html  
    Foreign                                 html  
    Hyperbolic                              html  
    ISOdatetime                             html  
    Internal                                html  
    InternalMethods                         html  
    La_library                              html  
    La_version                              html  
    Last.value                              html  
    Log                                     html  
    Logic                                   html  
    LongVectors                             html  
    MathFun                                 html  
    Memory-limits                           html  
    Memory                                  html  
    NA                                      html  
    NULL                                    html  
    NumericConstants                        html  
    Ops.Date                                html  
    Paren                                   html  
    Platform                                html  
    Primitive                               html  
    Quotes                                  html  
    Random-user                             html  
    Random                                  html  
    RdUtils                                 html  
    Recall                                  html  
    Reserved                                html  
    Rhome                                   html  
    Round                                   html  
    S3method                                html  
    Special                                 html  
    Startup                                 html  
    Syntax                                  html  
    Sys.getenv                              html  
    Sys.getpid                              html  
    Sys.glob                                html  
    Sys.info                                html  
    Sys.localeconv                          html  
    Sys.readlink                            html  
    Sys.setFileTime                         html  
    Sys.setenv                              html  
    Sys.sleep                               html  
    Sys.time                                html  
    Sys.which                               html  
    Trig                                    html  
    UTF8filepaths                           html  
    UseMethod                               html  
    Vectorize                               html  
    Version                                 html  
    abbreviate                              html  
    agrep                                   html  
    all                                     html  
    all.equal                               html  
    allnames                                html  
    any                                     html  
    aperm                                   html  
    append                                  html  
    apply                                   html  
    args                                    html  
    array                                   html  
    as.Date                                 html  
    as.POSIXlt                              html  
    as.data.frame                           html  
    as.environment                          html  
    as.function                             html  
    asplit                                  html  
    assign                                  html  
    assignOps                               html  
    attach                                  html  
    attr                                    html  
    attributes                              html  
    autoload                                html  
    backsolve                               html  
    base-defunct                            html  
REDIRECT:topic	 Previous alias or file overwritten by alias: ../../library/base/help/Version.html
REDIRECT:topic	 Previous alias or file overwritten by alias: ../../library/base/help/Platform.html
    base-deprecated                         html  
    base-internal                           html  
    base-package                            html  
    basename                                html  
    bincode                                 html  
    bindenv                                 html  
    bitwise                                 html  
    body                                    html  
    bquote                                  html  
    browser                                 html  
    browserText                             html  
    builtins                                html  
    by                                      html  
    c                                       html  
    call                                    html  
    callCC                                  html  
    capabilities                            html  
    cat                                     html  
    cbind                                   html  
    char.expand                             html  
    character                               html  
    charmatch                               html  
    chartr                                  html  
    chkDots                                 html  
    chol                                    html  
    chol2inv                                html  
    class                                   html  
    col                                     html  
    colSums                                 html  
    colnames                                html  
    commandArgs                             html  
    comment                                 html  
    complex                                 html  
    conditions                              html  
    conflicts                               html  
    connections                             html  
    contributors                            html  
    copyright                               html  
    crossprod                               html  
    cumsum                                  html  
    curlGetHeaders                          html  
    cut.POSIXt                              html  
    cut                                     html  
    data.class                              html  
    data.frame                              html  
    data.matrix                             html  
    dataframeHelpers                        html  
    date                                    html  
    dcf                                     html  
    debug                                   html  
    delayedAssign                           html  
    deparse                                 html  
    deparseOpts                             html  
    det                                     html  
    detach                                  html  
    dev                                     html  
    diag                                    html  
    diff                                    html  
    difftime                                html  
    dim                                     html  
    dimnames                                html  
    do.call                                 html  
    dontCheck                               html  
    dots                                    html  
    double                                  html  
    dput                                    html  
    drop                                    html  
    droplevels                              html  
    dump                                    html  
    duplicated                              html  
    dynload                                 html  
    eapply                                  html  
    eigen                                   html  
    encodeString                            html  
    environment                             html  
    eval                                    html  
    exists                                  html  
    expand.grid                             html  
    expression                              html  
    extSoftVersion                          html  
    factor                                  html  
    file.access                             html  
    file.choose                             html  
    file.info                               html  
    file.path                               html  
    file.show                               html  
    files                                   html  
    files2                                  html  
    find.package                            html  
    findInterval                            html  
    force                                   html  
    forceAndCall                            html  
    formals                                 html  
    format                                  html  
    format.info                             html  
    format.pval                             html  
    formatDL                                html  
    formatc                                 html  
    function                                html  
    funprog                                 html  
    gc                                      html  
    gc.time                                 html  
    gctorture                               html  
    get                                     html  
    getCallingDLL                           html  
    getDLLRegisteredRoutines                html  
    getLoadedDLLs                           html  
    getNativeSymbolInfo                     html  
    gettext                                 html  
    getwd                                   html  
    gl                                      html  
    grep                                    html  
    grepRaw                                 html  
    groupGeneric                            html  
    grouping                                html  
    gzcon                                   html  
    hexmode                                 html  
    iconv                                   html  
    icuSetCollate                           html  
    identical                               html  
    identity                                html  
    ifelse                                  html  
    integer                                 html  
    interaction                             html  
    interactive                             html  
    invisible                               html  
    is.finite                               html  
    is.function                             html  
    is.language                             html  
    is.object                               html  
    is.recursive                            html  
    is.single                               html  
    is.unsorted                             html  
    isR                                     html  
    isS4                                    html  
    isSymmetric                             html  
    jitter                                  html  
    kappa                                   html  
    kronecker                               html  
    l10n_info                               html  
    labels                                  html  
    lapply                                  html  
    lazyload                                html  
    length                                  html  
    lengths                                 html  
    levels                                  html  
    libPaths                                html  
    libcurlVersion                          html  
    library                                 html  
    library.dynam                           html  
    license                                 html  
    list                                    html  
    list.files                              html  
    list2DF                                 html  
    list2env                                html  
    load                                    html  
    locales                                 html  
    logical                                 html  
    lower.tri                               html  
    ls                                      html  
    make.names                              html  
    make.unique                             html  
    mapply                                  html  
    marginSums                              html  
    mat.or.vec                              html  
    match                                   html  
    match.arg                               html  
    match.call                              html  
    match.fun                               html  
    matmult                                 html  
    matrix                                  html  
    maxCol                                  html  
    mean                                    html  
    memCompress                             html  
    memlimits                               html  
    memory.profile                          html  
    merge                                   html  
    message                                 html  
    missing                                 html  
    mode                                    html  
    name                                    html  
    names                                   html  
    nargs                                   html  
    nchar                                   html  
    nlevels                                 html  
    noquote                                 html  
    norm                                    html  
    normalizePath                           html  
    notyet                                  html  
    nrow                                    html  
    ns-dblcolon                             html  
    ns-hooks                                html  
    ns-internal                             html  
    ns-load                                 html  
    ns-reflect                              html  
    ns-topenv                               html  
    numeric                                 html  
    numeric_version                         html  
    octmode                                 html  
    on.exit                                 html  
    options                                 html  
    order                                   html  
    outer                                   html  
    parse                                   html  
    paste                                   html  
    path.expand                             html  
    pcre_config                             html  
    pipeOp                                  html  
    plot                                    html  
    pmatch                                  html  
    polyroot                                html  
    pos.to.env                              html  
    pretty                                  html  
    print                                   html  
    print.dataframe                         html  
    print.default                           html  
    prmatrix                                html  
    proc.time                               html  
    prod                                    html  
    proportions                             html  
    pushBack                                html  
    qr                                      html  
    qraux                                   html  
    quit                                    html  
    range                                   html  
    rank                                    html  
    rapply                                  html  
    raw                                     html  
    rawConnection                           html  
    rawConversion                           html  
    readBin                                 html  
    readChar                                html  
    readLines                               html  
    readRDS                                 html  
    readRenviron                            html  
    readline                                html  
    reg.finalizer                           html  
    regex                                   html  
    regmatches                              html  
    rep                                     html  
    replace                                 html  
    rev                                     html  
    rle                                     html  
    rm                                      html  
    round.POSIXt                            html  
    row                                     html  
    row.names                               html  
    rowsum                                  html  
    sQuote                                  html  
    sample                                  html  
    save                                    html  
    scale                                   html  
    scan                                    html  
    search                                  html  
    seek                                    html  
    seq.Date                                html  
    seq.POSIXt                              html  
    seq                                     html  
    sequence                                html  
    serialize                               html  
    setTimeLimit                            html  
    sets                                    html  
    shQuote                                 html  
    showConnections                         html  
    sign                                    html  
    sink                                    html  
    slice.index                             html  
    slotOp                                  html  
    socketSelect                            html  
    solve                                   html  
    sort                                    html  
    source                                  html  
    split                                   html  
    sprintf                                 html  
    srcfile                                 html  
    standardGeneric                         html  
    startsWith                              html  
    stop                                    html  
    stopifnot                               html  
    strptime                                html  
    strrep                                  html  
    strsplit                                html  
    strtoi                                  html  
    strtrim                                 html  
    structure                               html  
    strwrap                                 html  
    subset                                  html  
    substitute                              html  
    substr                                  html  
    sum                                     html  
    summary                                 html  
    svd                                     html  
    sweep                                   html  
    switch                                  html  
    sys.parent                              html  
    sys.source                              html  
    system                                  html  
    system.file                             html  
    system.time                             html  
    system2                                 html  
    t                                       html  
    table                                   html  
    tabulate                                html  
    tapply                                  html  
    taskCallback                            html  
    taskCallbackManager                     html  
    taskCallbackNames                       html  
    tempfile                                html  
    textconnections                         html  
    tilde                                   html  
    timezones                               html  
    toString                                html  
    trace                                   html  
    traceback                               html  
    tracemem                                html  
    transform                               html  
    trimws                                  html  
    try                                     html  
    typeof                                  html  
    unique                                  html  
    unlink                                  html  
    unlist                                  html  
    unname                                  html  
    userhooks                               html  
    utf8Conversion                          html  
    validUTF8                               html  
    vector                                  html  
    warning                                 html  
    warnings                                html  
    weekday.POSIXt                          html  
    which                                   html  
    which.min                               html  
    with                                    html  
    withVisible                             html  
    write                                   html  
    writeLines                              html  
    xtfrm                                   html  
    zMachine                                html  
    zScript                                 html  
    zapsmall                                html  
    zpackages                               html  
    zutils                                  html  
    Signals                                 html  
  converting help for package 'tools'
    CRANtools                               html  
    HTMLheader                              html  
    HTMLlinks                               html  
    QC                                      html  
    Rcmd                                    html  
    Rd2HTML                                 html  
    Rd2txt_options                          html  
    RdTextFilter                            html  
    Rdiff                                   html  
    Rdindex                                 html  
    Rdutils                                 html  
    SweaveTeXFilter                         html  
    add_datalist                            html  
    assertCondition                         html  
    bibstyle                                html  
    buildVignette                           html  
    buildVignettes                          html  
    charsets                                html  
    checkFF                                 html  
    checkMD5sums                            html  
    checkPoFiles                            html  
    checkRd                                 html  
    checkRdaFiles                           html  
    checkTnF                                html  
    checkVignettes                          html  
    check_packages_in_dir                   html  
    codoc                                   html  
    compactPDF                              html  
    delimMatch                              html  
    dependsOnPkgs                           html  
    encoded                                 html  
    fileutils                               html  
    find_gs_cmd                             html  
    getVignetteInfo                         html  
    loadRdMacros                            html  
    makeLazyLoading                         html  
    make_translations_pkg                   html  
    makevars                                html  
    md5sum                                  html  
    package_dependencies                    html  
    package_native_routine_registration_skeleton
                                            html  
    parseLatex                              html  
    parse_Rd                                html  
    print.via.format                        html  
    pskill                                  html  
    psnice                                  html  
    read.00Index                            html  
    showNonASCII                            html  
    startDynamicHelp                        html  
    testInstalledPackage                    html  
    texi2dvi                                html  
    toHTML                                  html  
    toRd                                    html  
    toTitleCase                             html  
    tools-defunct                           html  
    tools-deprecated                        html  
    tools-package                           html  
    undoc                                   html  
    updatePACKAGES                          html  
    update_pkg_po                           html  
    userdir                                 html  
    vignetteEngine                          html  
    vignetteInfo                            html  
    writePACKAGES                           html  
    xgettext                                html  
  converting help for package 'utils'
    BATCH                                   html  
    COMPILE                                 html  
    DLL.version                             html  
    INSTALL                                 html  
    LINK                                    html  
    PkgUtils                                html  
    Question                                html  
    REMOVE                                  html  
    RHOME                                   html  
    RShowDoc                                html  
    RSiteSearch                             html  
    Rconsole                                html  
    Rprof                                   html  
    Rprofmem                                html  
    Rscript                                 html  
    Rtangle                                 html  
    RweaveLatex                             html  
    SHLIB                                   html  
    Sweave                                  html  
    SweaveSyntConv                          html  
    SweaveUtils                             html  
    URLencode                               html  
    View                                    html  
    adist                                   html  
    alarm                                   html  
    apropos                                 html  
    aregexec                                html  
    arrangeWindows                          html  
    askYesNo                                html  
    aspell-utils                            html  
    aspell                                  html  
    available.packages                      html  
    bibentry                                html  
    browseEnv                               html  
    browseURL                               html  
    browseVignettes                         html  
    bug.report                              html  
    capture.output                          html  
    changedFiles                            html  
    charClass                               html  
    choose.dir                              html  
    choose.files                            html  
    chooseBioCmirror                        html  
    chooseCRANmirror                        html  
    citEntry                                html  
    citation                                html  
    cite                                    html  
    clipboard                               html  
    close.socket                            html  
    combn                                   html  
    compareVersion                          html  
    contrib.url                             html  
    count.fields                            html  
    create.post                             html  
    data                                    html  
    dataentry                               html  
    debugcall                               html  
    debugger                                html  
    demo                                    html  
    download.file                           html  
    download.packages                       html  
    edit                                    html  
    edit.data.frame                         html  
    example                                 html  
    file.edit                               html  
    filetest                                html  
    findLineNum                             html  
    fix                                     html  
    flush.console                           html  
    format                                  html  
    getAnywhere                             html  
    getFromNamespace                        html  
    getParseData                            html  
    getS3method                             html  
    getWindowsHandle                        html  
    getWindowsHandles                       html  
    glob2rx                                 html  
    globalVariables                         html  
    hasName                                 html  
    head                                    html  
    help                                    html  
    help.request                            html  
    help.search                             html  
    help.start                              html  
    hsearch-utils                           html  
    install.packages                        html  
    installed.packages                      html  
    isS3method                              html  
    isS3stdGen                              html  
    localeToCharset                         html  
    ls_str                                  html  
    maintainer                              html  
    make.packages.html                      html  
    make.socket                             html  
    memory.size                             html  
    menu                                    html  
    methods                                 html  
    mirrorAdmin                             html  
    modifyList                              html  
    news                                    html  
    nsl                                     html  
    object.size                             html  
    package.skeleton                        html  
    packageDescription                      html  
    packageName                             html  
    packageStatus                           html  
    page                                    html  
    person                                  html  
    process.events                          html  
    prompt                                  html  
    promptData                              html  
    promptPackage                           html  
    rcompgen                                html  
    read.DIF                                html  
    read.fortran                            html  
    read.fwf                                html  
    read.socket                             html  
    read.table                              html  
    readRegistry                            html  
    recover                                 html  
    relist                                  html  
    remove.packages                         html  
    removeSource                            html  
    roman                                   html  
    rtags                                   html  
    savehistory                             html  
    select.list                             html  
    sessionInfo                             html  
    setRepositories                         html  
    setWindowTitle                          html  
    shortPathName                           html  
    sourceutils                             html  
    stack                                   html  
    str                                     html  
    strcapture                              html  
    summaryRprof                            html  
    tar                                     html  
    toLatex                                 html  
    txtProgressBar                          html  
    type.convert                            html  
    untar                                   html  
    unzip                                   html  
    update.packages                         html  
    url.show                                html  
    utils-defunct                           html  
    utils-deprecated                        html  
    utils-package                           html  
    vignette                                html  
    warnErrList                             html  
    winDialog                               html  
    winMenus                                html  
    winProgressBar                          html  
    winextras                               html  
    write.table                             html  
    zip                                     html  
  converting help for package 'grDevices'
    Devices                                 html  
    Hershey                                 html  
    Japanese                                html  
    Type1Font                               html  
    adjustcolor                             html  
    as.graphicsAnnot                        html  
    as.raster                               html  
    axisTicks                               html  
    boxplot.stats                           html  
    bringToTop                              html  
    cairo                                   html  
    cairoSymbolFont                         html  
    check.options                           html  
    chull                                   html  
    cm                                      html  
    col2rgb                                 html  
    colorRamp                               html  
    colors                                  html  
    contourLines                            html  
    convertColor                            html  
    densCols                                html  
    dev                                     html  
    dev.capabilities                        html  
    dev.capture                             html  
    dev.flush                               html  
    dev.interactive                         html  
    dev.size                                html  
    dev2                                    html  
    dev2bitmap                              html  
    devAskNewPage                           html  
    embedFonts                              html  
    extendrange                             html  
    getGraphicsEvent                        html  
    grDevices-package                       html  
    grSoftVersion                           html  
    gray                                    html  
    gray.colors                             html  
    hcl                                     html  
    hsv                                     html  
    make.rgb                                html  
    msgWindow                               html  
    n2mfrow                                 html  
    nclass                                  html  
    palette                                 html  
    palettes                                html  
    pdf                                     html  
    pdf.options                             html  
    pictex                                  html  
    plotmath                                html  
    postscript                              html  
    postscriptFonts                         html  
    pretty.Date                             html  
    ps.options                              html  
    quartz                                  html  
    quartzFonts                             html  
    recordGraphics                          html  
    recordplot                              html  
    rgb                                     html  
    rgb2hsv                                 html  
    trans3d                                 html  
    windows                                 html  
    windows.options                         html  
    windowsFonts                            html  
    x11                                     html  
    x11Fonts                                html  
    xfig                                    html  
    xy.coords                               html  
    xyTable                                 html  
    xyz.coords                              html  
    png                                     html  
    savePlot                                html  
  converting help for package 'graphics'
    abline                                  html  
    arrows                                  html  
    assocplot                               html  
    axTicks                                 html  
    axis.POSIXct                            html  
    axis                                    html  
    barplot                                 html  
    box                                     html  
    boxplot                                 html  
    boxplot.matrix                          html  
    bxp                                     html  
    cdplot                                  html  
    clip                                    html  
    contour                                 html  
    convertXY                               html  
    coplot                                  html  
    curve                                   html  
    dotchart                                html  
    filled.contour                          html  
    fourfoldplot                            html  
    frame                                   html  
    graphics-defunct                        html  
    graphics-package                        html  
    grid                                    html  
    hist.POSIXt                             html  
    hist                                    html  
    identify                                html  
    image                                   html  
    layout                                  html  
    legend                                  html  
    lines                                   html  
    locator                                 html  
    matplot                                 html  
    mosaicplot                              html  
    mtext                                   html  
    pairs                                   html  
    panel.smooth                            html  
    par                                     html  
    persp                                   html  
    pie                                     html  
    plot.dataframe                          html  
    plot.default                            html  
    plot.design                             html  
    plot.factor                             html  
    plot.formula                            html  
    plot.raster                             html  
    plot.table                              html  
    plot.window                             html  
    plot.xy                                 html  
    plothistogram                           html  
    points                                  html  
    polygon                                 html  
    polypath                                html  
    rasterImage                             html  
    rect                                    html  
    rug                                     html  
    screen                                  html  
    segments                                html  
    smoothScatter                           html  
    spineplot                               html  
    stars                                   html  
    stem                                    html  
    stripchart                              html  
    strwidth                                html  
    sunflowerplot                           html  
    symbols                                 html  
    text                                    html  
    title                                   html  
    units                                   html  
    xspline                                 html  
    zAxis                                   html  
  converting help for package 'stats'
    AIC                                     html  
    ARMAacf                                 html  
    ARMAtoMA                                html  
    Beta                                    html  
    Binomial                                html  
    Cauchy                                  html  
    Chisquare                               html  
    Distributions                           html  
    Exponential                             html  
    Fdist                                   html  
    GammaDist                               html  
    Geometric                               html  
    HoltWinters                             html  
    Hypergeometric                          html  
    IQR                                     html  
    KalmanLike                              html  
    Logistic                                html  
    Lognormal                               html  
    Multinom                                html  
    NLSstAsymptotic                         html  
    NLSstClosestX                           html  
    NLSstLfAsymptote                        html  
    NLSstRtAsymptote                        html  
    NegBinomial                             html  
    Normal                                  html  
    Pair                                    html  
    Poisson                                 html  
    SSD                                     html  
    SSasymp                                 html  
    SSasympOff                              html  
    SSasympOrig                             html  
    SSbiexp                                 html  
    SSfol                                   html  
    SSfpl                                   html  
    SSgompertz                              html  
    SSlogis                                 html  
    SSmicmen                                html  
    SSweibull                               html  
    SignRank                                html  
    StructTS                                html  
    TDist                                   html  
    Tukey                                   html  
    TukeyHSD                                html  
    Uniform                                 html  
    Weibull                                 html  
    Wilcoxon                                html  
    acf                                     html  
    acf2AR                                  html  
    add1                                    html  
    addmargins                              html  
    aggregate                               html  
    alias                                   html  
    anova                                   html  
    anova.glm                               html  
    anova.lm                                html  
    anova.mlm                               html  
    ansari.test                             html  
    aov                                     html  
    approxfun                               html  
    ar                                      html  
    ar.ols                                  html  
    arima                                   html  
    arima.sim                               html  
    arima0                                  html  
    as.hclust                               html  
    asOneSidedFormula                       html  
    ave                                     html  
    bandwidth                               html  
    bartlett.test                           html  
    binom.test                              html  
    biplot                                  html  
    biplot.princomp                         html  
    birthday                                html  
    box.test                                html  
    cancor                                  html  
    case.names                              html  
    checkMFClasses                          html  
    chisq.test                              html  
    cmdscale                                html  
    coef                                    html  
    complete.cases                          html  
    confint                                 html  
    constrOptim                             html  
    contrast                                html  
    contrasts                               html  
    convolve                                html  
    cophenetic                              html  
    cor                                     html  
    cor.test                                html  
    cov.wt                                  html  
    cpgram                                  html  
    cutree                                  html  
    decompose                               html  
    delete.response                         html  
    dendrapply                              html  
    dendrogram                              html  
    density                                 html  
    deriv                                   html  
    deviance                                html  
    df.residual                             html  
    diffinv                                 html  
    dist                                    html  
    dummy.coef                              html  
    ecdf                                    html  
    eff.aovlist                             html  
    effects                                 html  
    embed                                   html  
    expand.model.frame                      html  
    extractAIC                              html  
    factanal                                html  
    factor.scope                            html  
    family                                  html  
    fft                                     html  
    filter                                  html  
    fisher.test                             html  
    fitted.values                           html  
    fivenum                                 html  
    fligner.test                            html  
    formula                                 html  
    formula.nls                             html  
    friedman.test                           html  
    ftable                                  html  
    ftable.formula                          html  
    getInitial                              html  
    glm                                     html  
    glm.control                             html  
    glm.summaries                           html  
    hclust                                  html  
    heatmap                                 html  
    identify.hclust                         html  
    influence.measures                      html  
    integrate                               html  
    interaction.plot                        html  
    is.empty                                html  
    isoreg                                  html  
    kernapply                               html  
    kernel                                  html  
    kmeans                                  html  
    kruskal.test                            html  
    ks.test                                 html  
    ksmooth                                 html  
    lag                                     html  
    lag.plot                                html  
    line                                    html  
    listof                                  html  
    lm                                      html  
    lm.influence                            html  
    lm.summaries                            html  
    lmfit                                   html  
    loadings                                html  
    loess                                   html  
    loess.control                           html  
    logLik                                  html  
    loglin                                  html  
    lowess                                  html  
    ls.diag                                 html  
    ls.print                                html  
    lsfit                                   html  
    mad                                     html  
    mahalanobis                             html  
    make.link                               html  
    makepredictcall                         html  
    manova                                  html  
    mantelhaen.test                         html  
    mauchly.test                            html  
    mcnemar.test                            html  
    median                                  html  
    medpolish                               html  
    model.extract                           html  
    model.frame                             html  
    model.matrix                            html  
    model.tables                            html  
    monthplot                               html  
    mood.test                               html  
    na.action                               html  
    na.contiguous                           html  
    na.fail                                 html  
    nafns                                   html  
    naprint                                 html  
    nextn                                   html  
    nlm                                     html  
    nlminb                                  html  
    nls                                     html  
    nls.control                             html  
    nobs                                    html  
    numericDeriv                            html  
    offset                                  html  
    oneway.test                             html  
    optim                                   html  
    optimize                                html  
    order.dendrogram                        html  
    p.adjust                                html  
    pairwise.prop.test                      html  
    pairwise.t.test                         html  
    pairwise.table                          html  
    pairwise.wilcox.test                    html  
    plot.HoltWinters                        html  
    plot.acf                                html  
    plot.density                            html  
    plot.isoreg                             html  
    plot.lm                                 html  
    plot.ppr                                html  
    plot.profile.nls                        html  
    plot.spec                               html  
    plot.stepfun                            html  
    plot.ts                                 html  
    poisson.test                            html  
    poly                                    html  
    power                                   html  
    power.anova.test                        html  
    power.prop.test                         html  
    power.t.test                            html  
    pp.test                                 html  
    ppoints                                 html  
    ppr                                     html  
    prcomp                                  html  
    predict.HoltWinters                     html  
    predict                                 html  
    predict.arima                           html  
    predict.glm                             html  
    predict.lm                              html  
    predict.loess                           html  
    predict.nls                             html  
    predict.smooth.spline                   html  
    preplot                                 html  
    princomp                                html  
    print.power.htest                       html  
    print.ts                                html  
    printCoefmat                            html  
    profile                                 html  
    profile.nls                             html  
    proj                                    html  
    prop.test                               html  
    prop.trend.test                         html  
    qqnorm                                  html  
    quade.test                              html  
    quantile                                html  
    r2dtable                                html  
    rWishart                                html  
    read.ftable                             html  
    rect.hclust                             html  
    relevel                                 html  
    reorder.dendrogram                      html  
    reorder.factor                          html  
    replications                            html  
    reshape                                 html  
    residuals                               html  
    runmed                                  html  
    scatter.smooth                          html  
    screeplot                               html  
    sd                                      html  
    se.contrast                             html  
    selfStart                               html  
    setNames                                html  
    shapiro.test                            html  
    sigma                                   html  
    simulate                                html  
    smooth                                  html  
    smooth.spline                           html  
    smoothEnds                              html  
    sortedXyData                            html  
    spec.ar                                 html  
    spec.pgram                              html  
    spec.taper                              html  
    spectrum                                html  
    splinefun                               html  
    start                                   html  
    stat.anova                              html  
    stats-defunct                           html  
    stats-deprecated                        html  
    stats-package                           html  
    step                                    html  
    stepfun                                 html  
    stl                                     html  
    stlmethods                              html  
    summary.aov                             html  
    summary.glm                             html  
    summary.lm                              html  
    summary.manova                          html  
    summary.nls                             html  
    summary.princomp                        html  
    supsmu                                  html  
    symnum                                  html  
    t.test                                  html  
    termplot                                html  
    terms                                   html  
    terms.formula                           html  
    terms.object                            html  
    time                                    html  
    toeplitz                                html  
    ts-methods                              html  
    ts                                      html  
    ts.plot                                 html  
    ts.union                                html  
    tsSmooth                                html  
    tsdiag                                  html  
    tsp                                     html  
    uniroot                                 html  
    update                                  html  
    update.formula                          html  
    var.test                                html  
    varimax                                 html  
    vcov                                    html  
    weighted.mean                           html  
    weighted.residuals                      html  
    weights                                 html  
    wilcox.test                             html  
    window                                  html  
    xtabs                                   html  
    zC                                      html  
  converting help for package 'datasets'
    AirPassengers                           html  
    BJsales                                 html  
    BOD                                     html  
    ChickWeight                             html  
    DNase                                   html  
    EuStockMarkets                          html  
    Formaldehyde                            html  
    HairEyeColor                            html  
    Harman23.cor                            html  
    Harman74.cor                            html  
    Indometh                                html  
    InsectSprays                            html  
    JohnsonJohnson                          html  
    LakeHuron                               html  
    LifeCycleSavings                        html  
    Loblolly                                html  
    Nile                                    html  
    Orange                                  html  
    OrchardSprays                           html  
    PlantGrowth                             html  
    Puromycin                               html  
    Theoph                                  html  
    Titanic                                 html  
    ToothGrowth                             html  
    UCBAdmissions                           html  
    UKDriverDeaths                          html  
    UKLungDeaths                            html  
    UKgas                                   html  
    USAccDeaths                             html  
    USArrests                               html  
    USJudgeRatings                          html  
    USPersonalExpenditure                   html  
    VADeaths                                html  
    WWWusage                                html  
    WorldPhones                             html  
    ability.cov                             html  
    airmiles                                html  
    airquality                              html  
    anscombe                                html  
    attenu                                  html  
    attitude                                html  
    austres                                 html  
    beavers                                 html  
    cars                                    html  
    chickwts                                html  
    co2                                     html  
    crimtab                                 html  
    datasets-package                        html  
    discoveries                             html  
    esoph                                   html  
    euro                                    html  
    eurodist                                html  
    faithful                                html  
    freeny                                  html  
    infert                                  html  
    iris                                    html  
    islands                                 html  
    lh                                      html  
    longley                                 html  
    lynx                                    html  
    morley                                  html  
    mtcars                                  html  
    nhtemp                                  html  
    nottem                                  html  
    npk                                     html  
    occupationalStatus                      html  
    precip                                  html  
    presidents                              html  
    pressure                                html  
    quakes                                  html  
    randu                                   html  
    rivers                                  html  
    rock                                    html  
    sleep                                   html  
    stackloss                               html  
    state                                   html  
    sunspot.month                           html  
    sunspot.year                            html  
    sunspots                                html  
    swiss                                   html  
    treering                                html  
    trees                                   html  
    uspop                                   html  
    volcano                                 html  
    warpbreaks                              html  
    women                                   html  
    zCO2                                    html  
  converting help for package 'methods'
    BasicClasses                            html  
    Classes                                 html  
    Classes_Details                         html  
    Documentation                           html  
    EmptyMethodsList-class                  html  
    EnvironmentClass                        html  
    GenericFunctions                        html  
    Introduction                            html  
    LanguageClasses                         html  
    LinearMethodsList-class                 html  
    MethodDefinition-class                  html  
    MethodSupport                           html  
    MethodWithNext-class                    html  
    Methods                                 html  
    MethodsList-class                       html  
    MethodsList                             html  
    Methods_Details                         html  
    Methods_for_Nongenerics                 html  
    Methods_for_S3                          html  
    NextMethod                              html  
    ObjectsWithPackage-class                html  
    RClassUtils                             html  
    RMethodUtils                            html  
    S3Part                                  html  
    S4groupGeneric                          html  
    SClassExtension-class                   html  
    StructureClasses                        html  
    TraceClasses                            html  
    as                                      html  
    callGeneric                             html  
    canCoerce                               html  
    cbind2                                  html  
    className                               html  
    classRepresentation-class               html  
    classesToAM                             html  
    dotsMethods                             html  
    evalSource                              html  
    findClass                               html  
    findMethods                             html  
    fixPrevious                             html  
    genericFunction-class                   html  
    getClass                                html  
    getMethod                               html  
    getPackageName                          html  
    hasArg                                  html  
    implicitGeneric                         html  
    inheritedSlotNames                      html  
    initialize-methods                      html  
    is                                      html  
    isSealedMethod                          html  
    languageEl                              html  
    localRefClass                           html  
    method.skeleton                         html  
    methodUtilities                         html  
    methods-defunct                         html  
    methods-deprecated                      html  
    methods-package                         html  
    new                                     html  
    nonStructure-class                      html  
    promptClass                             html  
    promptMethods                           html  
    refClass                                html  
    removeMethod                            html  
    representation                          html  
    selectSuperClasses                      html  
    setAs                                   html  
    setClass                                html  
    setClassUnion                           html  
    setGeneric                              html  
    setGroupGeneric                         html  
    setIs                                   html  
    setLoadActions                          html  
    setMethod                               html  
    setOldClass                             html  
    setSClass                               html  
    show                                    html  
    showMethods                             html  
    signature-class                         html  
    slot                                    html  
    stdRefClass                             html  
    substituteDirect                        html  
    testInheritedMethods                    html  
    validObject                             html  
    zBasicFunsList                          html  
  converting help for package 'grid'
    Grid                                    html  
    absolute.size                           html  
    arrow                                   html  
    calcStringMetric                        html  
    current.viewport                        html  
    dataViewport                            html  
    depth                                   html  
    deviceLoc                               html  
    drawDetails                             html  
    editDetails                             html  
    editViewport                            html  
    explode                                 html  
    gEdit                                   html  
    gPath                                   html  
    getNames                                html  
    gpar                                    html  
    grid-defunct                            html  
    grid-internal                           html  
    grid-package                            html  
    grid.DLapply                            html  
    grid.add                                html  
    grid.bezier                             html  
    grid.cap                                html  
    grid.circle                             html  
    grid.clip                               html  
    grid.convert                            html  
    grid.copy                               html  
    grid.curve                              html  
    grid.delay                              html  
    grid.display.list                       html  
    grid.draw                               html  
    grid.edit                               html  
    grid.force                              html  
    grid.frame                              html  
    grid.function                           html  
    grid.get                                html  
    grid.grab                               html  
    grid.grep                               html  
    grid.grill                              html  
    grid.grob                               html  
    grid.layout                             html  
    grid.lines                              html  
    grid.locator                            html  
    grid.ls                                 html  
    grid.move.to                            html  
    grid.newpage                            html  
    grid.null                               html  
    grid.pack                               html  
    grid.path                               html  
    grid.place                              html  
    grid.plot.and.legend                    html  
    grid.points                             html  
    grid.polygon                            html  
    grid.pretty                             html  
    grid.raster                             html  
    grid.record                             html  
    grid.rect                               html  
    grid.refresh                            html  
    grid.remove                             html  
    grid.reorder                            html  
    grid.roundrect                          html  
    grid.segments                           html  
    grid.set                                html  
    grid.show.layout                        html  
    grid.show.viewport                      html  
    grid.text                               html  
    grid.xaxis                              html  
    grid.xspline                            html  
    grid.yaxis                              html  
    grobCoords                              html  
    grobName                                html  
    grobWidth                               html  
    grobX                                   html  
    legendGrob                              html  
    makeContent                             html  
    patterns                                html  
    plotViewport                            html  
    resolveRasterSize                       html  
    showGrob                                html  
    showViewport                            html  
    stringWidth                             html  
    unit                                    html  
    unit.c                                  html  
    unit.length                             html  
    unit.pmin                               html  
    unit.rep                                html  
    unitType                                html  
    valid.just                              html  
    validDetails                            html  
    viewport                                html  
    viewports                               html  
    vpPath                                  html  
    widthDetails                            html  
    xDetails                                html  
    xsplinePoints                           html  
  converting help for package 'splines'
    asVector                                html  
    backSpline                              html  
    bs                                      html  
    interpSpline                            html  
    ns                                      html  
    periodicSpline                          html  
    polySpline                              html  
    predict.bSpline                         html  
    predict.bs                              html  
    splineDesign                            html  
    splineKnots                             html  
    splineOrder                             html  
    splines-package                         html  
    xyVector                                html  
  converting help for package 'stats4'
    coef-methods                            html  
    confint-methods                         html  
    logLik-methods                          html  
    mle-class                               html  
    mle                                     html  
    plot-methods                            html  
    profile-methods                         html  
    profile.mle-class                       html  
    show-methods                            html  
    stats4-package                          html  
    summary-methods                         html  
    summary.mle-class                       html  
    update-methods                          html  
    vcov-methods                            html  
  converting help for package 'tcltk'
    TclInterface                            html  
    TkCommands                              html  
    TkWidgetcmds                            html  
    TkWidgets                               html  
    tclServiceMode                          html  
    tcltk-defunct                           html  
    tcltk-package                           html  
    tkProgressBar                           html  
    tkStartGUI                              html  
    tk_choose.dir                           html  
    tk_choose.files                         html  
    tk_messageBox                           html  
    tk_select.list                          html  
    tkpager                                 html  
  converting help for package 'compiler'
    compile                                 html  
  converting help for package 'parallel'
    RngStream                               html  
    clusterApply                            html  
    detectCores                             html  
    makeCluster                             html  
    parallel-package                        html  
    splitIndices                            html  
    children                                html  
    mcaffinity                              html  
    mcfork                                  html  
    mclapply                                html  
    mcparallel                              html  
    pvec                                    html  
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended'
begin installing recommended package MASS
* installing *source* package 'MASS' ...
** package 'MASS' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpzkPggS/R.INSTALL30cc3a4f7b6653/MASS/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c MASS.c -o MASS.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lqs.c -o lqs.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpzkPggS/R.INSTALL30cc3a4f7b6653/MASS/src'
installing to /builddir/build/BUILD/R-4.1.2/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MASS'
    finding HTML links ... done
    Aids2                                   html  
    Animals                                 html  
    Boston                                  html  
    Cars93                                  html  
    Cushings                                html  
    DDT                                     html  
    GAGurine                                html  
    Insurance                               html  
    MASS-internal                           html  
    Melanoma                                html  
    Null                                    html  
    OME                                     html  
    Pima.tr                                 html  
    Rabbit                                  html  
    Rubber                                  html  
    SP500                                   html  
    Sitka                                   html  
    Sitka89                                 html  
    Skye                                    html  
    Traffic                                 html  
    UScereal                                html  
    UScrime                                 html  
    VA                                      html  
    abbey                                   html  
    accdeaths                               html  
    addterm                                 html  
    anorexia                                html  
    anova.negbin                            html  
    area                                    html  
    bacteria                                html  
    bandwidth.nrd                           html  
    bcv                                     html  
    beav1                                   html  
    beav2                                   html  
    biopsy                                  html  
    birthwt                                 html  
    boxcox                                  html  
    cabbages                                html  
    caith                                   html  
    cats                                    html  
    cement                                  html  
    chem                                    html  
    con2tr                                  html  
    confint                                 html  
    contr.sdif                              html  
    coop                                    html  
    corresp                                 html  
    cov.rob                                 html  
    cov.trob                                html  
    cpus                                    html  
    crabs                                   html  
    deaths                                  html  
    denumerate                              html  
    dose.p                                  html  
    drivers                                 html  
    dropterm                                html  
    eagles                                  html  
    epil                                    html  
    eqscplot                                html  
    farms                                   html  
    fgl                                     html  
    fitdistr                                html  
    forbes                                  html  
    fractions                               html  
    galaxies                                html  
    gamma.dispersion                        html  
    gamma.shape.glm                         html  
    gehan                                   html  
    genotype                                html  
    geyser                                  html  
    gilgais                                 html  
    ginv                                    html  
    glm.convert                             html  
    glm.nb                                  html  
    glmmPQL                                 html  
    hills                                   html  
    hist.scott                              html  
    housing                                 html  
    huber                                   html  
    hubers                                  html  
    immer                                   html  
    isoMDS                                  html  
    kde2d                                   html  
    lda                                     html  
    ldahist                                 html  
    leuk                                    html  
    lm.gls                                  html  
    lm.ridge                                html  
    loglm                                   html  
    loglm1                                  html  
    logtrans                                html  
    lqs                                     html  
    mammals                                 html  
    mca                                     html  
    mcycle                                  html  
    menarche                                html  
    michelson                               html  
    minn38                                  html  
    motors                                  html  
    muscle                                  html  
    mvrnorm                                 html  
    negative.binomial                       html  
    newcomb                                 html  
    nlschools                               html  
    npk                                     html  
    npr1                                    html  
    oats                                    html  
    painters                                html  
    pairs.lda                               html  
    parcoord                                html  
    petrol                                  html  
    phones                                  html  
    plot.lda                                html  
    plot.mca                                html  
    plot.profile                            html  
    polr                                    html  
    predict.glmmPQL                         html  
    predict.lda                             html  
    predict.lqs                             html  
    predict.mca                             html  
    predict.qda                             html  
    profile.glm                             html  
    qda                                     html  
    quine                                   html  
    rational                                html  
    renumerate                              html  
    rlm                                     html  
    rms.curv                                html  
    rnegbin                                 html  
    road                                    html  
    rotifer                                 html  
    sammon                                  html  
    ships                                   html  
    shoes                                   html  
    shrimp                                  html  
    shuttle                                 html  
    snails                                  html  
    stdres                                  html  
    steam                                   html  
    stepAIC                                 html  
    stormer                                 html  
    studres                                 html  
    summary.loglm                           html  
    summary.negbin                          html  
    summary.rlm                             html  
    survey                                  html  
    synth.tr                                html  
    theta.md                                html  
    topo                                    html  
    truehist                                html  
    ucv                                     html  
    waders                                  html  
    whiteside                               html  
    width.SJ                                html  
    write.matrix                            html  
    wtloss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
Making 'packages.html' ... done
begin installing recommended package lattice
* installing *source* package 'lattice' ...
** package 'lattice' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpzS40OX/R.INSTALL30cc676816199/lattice/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c threeDplot.c -o threeDplot.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpzS40OX/R.INSTALL30cc676816199/lattice/src'
installing to /builddir/build/BUILD/R-4.1.2/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'lattice'
    finding HTML links ... done
    Lattice                                 html  
    Rows                                    html  
    USMortality                             html  
    axis.default                            html  
    banking                                 html  
    barchart.table                          html  
    barley                                  html  
    cloud                                   html  
    draw.colorkey                           html  
    draw.key                                html  
    environmental                           html  
    ethanol                                 html  
    histogram                               html  
    interaction                             html  
    lattice.options                         html  
    latticeParseFormula                     html  
    level.colors                            html  
    levelplot                               html  
    llines                                  html  
    lset                                    html  
    make.groups                             html  
    melanoma                                html  
    oneway                                  html  
    packet.panel.default                    html  
    panel.axis                              html  
    panel.barchart                          html  
    panel.bwplot                            html  
    panel.cloud                             html  
    panel.densityplot                       html  
    panel.dotplot                           html  
    panel.functions                         html  
    panel.histogram                         html  
    panel.levelplot                         html  
    panel.loess                             html  
    panel.number                            html  
    panel.pairs                             html  
    panel.parallel                          html  
    panel.qqmath                            html  
    panel.qqmathline                        html  
    panel.smoothScatter                     html  
    panel.spline                            html  
    panel.stripplot                         html  
    panel.superpose                         html  
    panel.violin                            html  
    panel.xyplot                            html  
    prepanel.default                        html  
    prepanel.functions                      html  
    print.trellis                           html  
    qq                                      html  
    qqmath                                  html  
    rfs                                     html  
    shingles                                html  
    simpleKey                               html  
    simpleTheme                             html  
    singer                                  html  
    splom                                   html  
    strip.default                           html  
    tmd                                     html  
    trellis.device                          html  
    trellis.object                          html  
    trellis.par.get                         html  
    update.trellis                          html  
    utilities.3d                            html  
    xyplot                                  html  
    xyplot.ts                               html  
** building package indices
** testing if installed package can be loaded
* DONE (lattice)
Making 'packages.html' ... done
begin installing recommended package Matrix
* installing *source* package 'Matrix' ...
** package 'Matrix' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c CHMfactor.c -o CHMfactor.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Csparse.c -o Csparse.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c TMatrix_as.c -o TMatrix_as.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Tsparse.c -o Tsparse.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Mutils.c -o Mutils.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chm_common.c -o chm_common.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cs.c -o cs.o
cs.c: In function 'cs_qr':
cs.c:1409:18: warning: variable 'm' set but not used [-Wunused-but-set-variable]
 1409 |     csi i, k, p, m, n, vnz, p1, top, m2, len, col, rnz, *s, *leftmost, *Ap, *Ai,
      |                  ^
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cs_utils.c -o cs_utils.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dense.c -o dense.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dgCMatrix.c -o dgCMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dgTMatrix.c -o dgTMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dgeMatrix.c -o dgeMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dpoMatrix.c -o dpoMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dppMatrix.c -o dppMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dsCMatrix.c -o dsCMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dsyMatrix.c -o dsyMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dspMatrix.c -o dspMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dtCMatrix.c -o dtCMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dtTMatrix.c -o dtTMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dtrMatrix.c -o dtrMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dtpMatrix.c -o dtpMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c factorizations.c -o factorizations.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ldense.c -o ldense.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c lgCMatrix.c -o lgCMatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sparseQR.c -o sparseQR.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c abIndex.c -o abIndex.o
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD'
( cd Lib ; make clean )
make[5]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD/Lib'
make[5]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD'
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD'
( cd Source ; make clean )
make[5]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD/Source'
make[5]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD/Source'
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD'
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD'
( cd Source ; make clean )
make[5]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD/Source'
make[5]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD/Source'
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD'
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/SuiteSparse_config'
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/SuiteSparse_config'
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD'
( cd Lib ; make -f "/builddir/build/BUILD/R-4.1.2/etc/Makeconf" -f Makefile )
make[5]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD/Lib'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_aat.c -o cholmod_aat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_add.c -o cholmod_add.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_band.c -o cholmod_band.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
In file included from ../Core/cholmod_change_factor.c:113:
../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
In file included from ../Core/cholmod_change_factor.c:115:
../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic':
../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]
  262 |     Int nsuper, xsize, ssize ;
      |                 ^~~~~
../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric':
../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |               ^~
../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |          ^~
../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |             ^~
../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric':
../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  824 |     Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;
      |         ^
../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |                     ^~~
../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |          ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_common.c -o cholmod_common.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_complex.c -o cholmod_complex.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_copy.c -o cholmod_copy.o
../Core/cholmod_copy.c: In function 'cholmod_copy':
../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                         ^~
../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                     ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_dense.c -o cholmod_dense.o
In file included from ../Core/cholmod_dense.c:45:
../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |             ^~
In file included from ../Core/cholmod_dense.c:47:
../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
In file included from ../Core/cholmod_dense.c:49:
../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
../Core/cholmod_dense.c: In function 'cholmod_eye':
../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  300 |     Int i, n, nz ;
      |               ^~
../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  299 |     double *Xx, *Xz ;
      |                  ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_error.c -o cholmod_error.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_factor.c -o cholmod_factor.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_memory.c -o cholmod_memory.o
../Core/cholmod_memory.c: In function 'cholmod_malloc':
../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]
  121 |     size_t s ;
      |            ^
../Core/cholmod_memory.c: In function 'cholmod_realloc':
../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]
  311 |     size_t s ;
      |            ^
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
../Core/cholmod_sparse.c: In function 'cholmod_copy_sparse':
../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  485 |     Int p, pend, j, ncol, packed, nzmax, nz, xtype ;
      |                                   ^~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
In file included from ../Core/cholmod_transpose.c:121:
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
In file included from ../Core/cholmod_transpose.c:123:
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:125:
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:128:
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:130:
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
In file included from ../Core/cholmod_transpose.c:133:
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
In file included from ../Core/cholmod_triplet.c:105:
../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                       ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |             ^~
In file included from ../Core/cholmod_triplet.c:107:
../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
In file included from ../Core/cholmod_triplet.c:109:
../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/cholmod_triplet.c: In function 'cholmod_triplet_to_sparse':
../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
  342 |     Int i, j, p, k, stype, nrow, ncol, nz, ok ;
      |                                            ^~
../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]
  341 |     Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;
      |                    ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Core/cholmod_version.c -o cholmod_version.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Check/cholmod_check.c -o cholmod_check.o
../Check/cholmod_check.c: In function 'check_common':
../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]
  204 |     Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;
      |                                                             ^~~~~~~~~~
../Check/cholmod_check.c: In function 'check_dense':
../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  950 |     Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;
      |                                     ^~
../Check/cholmod_check.c: In function 'check_factor':
../Check/cholmod_check.c:1497:9: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]
 1497 |         ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;
      |         ^~~
../Check/cholmod_check.c:1495:16: warning: variable 'precise' set but not used [-Wunused-but-set-variable]
 1495 |         count, precise, init_print, ilast, lnz, head, tail, jprev, plast,
      |                ^~~~~~~
../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]
 1494 |     Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,
      |                                      ^~~~~~~~
../Check/cholmod_check.c: In function 'check_factor.constprop':
../Check/cholmod_check.c:1496:62: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1496 |         jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol,
      |                                                              ^~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Check/cholmod_read.c -o cholmod_read.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Check/cholmod_write.c -o cholmod_write.o
../Check/cholmod_write.c: In function 'cholmod_write_sparse':
../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]
  366 |     Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,
      |                                 ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
../Cholesky/cholmod_analyze.c: In function 'cholmod_analyze_p2':
../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
  419 |     Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,
      |                                                                     ^~~~
../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                             ^~~~~~~
../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                   ^~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
../Cholesky/cholmod_factorize.c: In function 'cholmod_factorize_p':
../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  111 |     Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;
      |                                     ^
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
In file included from ../Cholesky/cholmod_rowfac.c:161:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:163:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:165:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
In file included from ../Cholesky/cholmod_rowfac.c:169:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:171:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:173:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
In file included from ../Cholesky/cholmod_solve.c:63:
../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
In file included from ../Cholesky/cholmod_solve.c:66:
../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
../Cholesky/cholmod_solve.c: In function 'iperm':
../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]
  334 |     Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;
      |             ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
In file included from ../MatrixOps/cholmod_sdmult.c:44:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:46:
../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:48:
../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Modify/cholmod_updown.c -o cholmod_updown.o
../Modify/cholmod_updown.c: In function 'cholmod_updown_mask2':
../Modify/cholmod_updown.c:433:40: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]
  433 |         *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;
      |                                        ^~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
In file included from ../Supernodal/cholmod_super_numeric.c:82:
../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:84:
../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:86:
../Supernodal/t_cholmod_super_numeric.c: In function 'z_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
In file included from ../Supernodal/cholmod_super_solve.c:26:
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
In file included from ../Supernodal/cholmod_super_solve.c:28:
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_super_symbolic2':
../Supernodal/cholmod_super_symbolic.c:562:21: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]
  562 |                 Int totsize ;
      |                     ^~~~~~~
../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]
  185 |     double max_fraction;
      |            ^~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]
  184 |     const char* env_max_fraction;
      |                 ^~~~~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]
  183 |     size_t max_bytes;
      |            ^~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]
  182 |     const char* env_max_bytes;
      |                 ^~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]
  181 |     const char* env_use_gpu;
      |                 ^~~~~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
../Core/cholmod_add.c:34:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
   34 |     double alpha [2],       /* scale factor for A */
      |     ~~~~~~~^~~~~~~~~
In file included from ../Core/cholmod_add.c:27:
../Include/cholmod_core.h:1582:68: note: previously declared as 'double *'
 1582 | cholmod_sparse *cholmod_l_add (cholmod_sparse *, cholmod_sparse *, double *,
      |                                                                    ^~~~~~~~
../Core/cholmod_add.c:35:12: warning: argument 4 of type 'double[2]' with mismatched bound [-Warray-parameter=]
   35 |     double beta [2],        /* scale factor for B */
      |     ~~~~~~~^~~~~~~~
In file included from ../Core/cholmod_add.c:27:
../Include/cholmod_core.h:1583:5: note: previously declared as 'double *'
 1583 |     double *, int, int, cholmod_common *) ;
      |     ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
In file included from ../Core/cholmod_change_factor.c:113:
../Core/t_cholmod_change_factor.c: In function 'r_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
In file included from ../Core/cholmod_change_factor.c:115:
../Core/t_cholmod_change_factor.c: In function 'c_change_simplicial_numeric':
../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   37 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c: In function 'simplicial_symbolic_to_super_symbolic':
../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]
  262 |     Int nsuper, xsize, ssize ;
      |                 ^~~~~
../Core/cholmod_change_factor.c: In function 'change_simplicial_numeric':
../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |               ^~
../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]
  677 |     Int *Lp, *Li, *Lnz ;
      |          ^~
../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |                  ^~
../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]
  676 |     double *Lx, *Lz ;
      |             ^~
../Core/cholmod_change_factor.c: In function 'll_super_to_simplicial_numeric':
../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  824 |     Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;
      |         ^
../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |                     ^~~
../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]
  823 |     Int *Ls, *Lpi, *Lpx, *Super, *Li ;
      |          ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
../Core/cholmod_copy.c: In function 'cholmod_l_copy':
../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                         ^~
../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]
  275 |     Int nrow, ncol, up, lo, values, diag, astype ;
      |                     ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
In file included from ../Core/cholmod_dense.c:45:
../Core/t_cholmod_dense.c: In function 'p_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |             ^~
In file included from ../Core/cholmod_dense.c:47:
../Core/t_cholmod_dense.c: In function 'r_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'r_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
In file included from ../Core/cholmod_dense.c:49:
../Core/t_cholmod_dense.c: In function 'c_cholmod_sparse_to_dense':
../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                            ^~
../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   27 |     double *Ax, *Xx, *Az, *Xz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_dense_to_sparse':
../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                            ^~
../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  133 |     double *Xx, *Cx, *Xz, *Cz ;
      |                       ^~
../Core/t_cholmod_dense.c: In function 'c_cholmod_copy_dense2':
../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                            ^~
../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  226 |     double *Xx, *Xz, *Yx, *Yz ;
      |                  ^~
../Core/cholmod_dense.c: In function 'cholmod_l_eye':
../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  300 |     Int i, n, nz ;
      |               ^~
../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
  299 |     double *Xx, *Xz ;
      |                  ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
../Core/cholmod_memory.c: In function 'cholmod_l_malloc':
../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]
  121 |     size_t s ;
      |            ^
../Core/cholmod_memory.c: In function 'cholmod_l_realloc':
../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]
  311 |     size_t s ;
      |            ^
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
../Core/cholmod_sparse.c: In function 'cholmod_l_copy_sparse':
../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
  485 |     Int p, pend, j, ncol, packed, nzmax, nz, xtype ;
      |                                   ^~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
In file included from ../Core/cholmod_transpose.c:121:
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
../Core/t_cholmod_transpose.c: In function 'p_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                       ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |             ^~
In file included from ../Core/cholmod_transpose.c:123:
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'r_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:125:
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'c_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:128:
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   42 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
../Core/t_cholmod_transpose.c: In function 'ct_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                            ^~
../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  139 |     double *Ax, *Az, *Fx, *Fz ;
      |                  ^~
In file included from ../Core/cholmod_transpose.c:130:
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'z_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
In file included from ../Core/cholmod_transpose.c:133:
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_unsym':
../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                                     ^~~~~~~
../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                                                        ^~~~~~~
../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   44 |     Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;
      |                     ^~~~
../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                               ^~~
../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
   43 |     Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;
      |                          ^~
../Core/t_cholmod_transpose.c: In function 'zt_cholmod_transpose_sym':
../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]
  140 |     Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;
      |                          ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
In file included from ../Core/cholmod_triplet.c:105:
../Core/t_cholmod_triplet.c: In function 'p_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                       ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |             ^~
In file included from ../Core/cholmod_triplet.c:107:
../Core/t_cholmod_triplet.c: In function 'r_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
In file included from ../Core/cholmod_triplet.c:109:
../Core/t_cholmod_triplet.c: In function 'c_cholmod_triplet_to_sparse':
../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                            ^~
../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]
   28 |     double *Rx, *Rz, *Tx, *Tz ;
      |                  ^~
../Core/cholmod_triplet.c: In function 'cholmod_l_triplet_to_sparse':
../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
  342 |     Int i, j, p, k, stype, nrow, ncol, nz, ok ;
      |                                            ^~
../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]
  341 |     Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;
      |                    ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
../Check/cholmod_check.c: In function 'check_common':
../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]
  204 |     Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;
      |                                                             ^~~~~~~~~~
../Check/cholmod_check.c: In function 'check_dense':
../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]
  950 |     Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;
      |                                     ^~
../Check/cholmod_check.c: In function 'check_factor':
../Check/cholmod_check.c:1497:9: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]
 1497 |         ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;
      |         ^~~
../Check/cholmod_check.c:1495:16: warning: variable 'precise' set but not used [-Wunused-but-set-variable]
 1495 |         count, precise, init_print, ilast, lnz, head, tail, jprev, plast,
      |                ^~~~~~~
../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]
 1494 |     Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,
      |                                      ^~~~~~~~
../Check/cholmod_check.c: In function 'check_factor.constprop':
../Check/cholmod_check.c:1496:62: warning: 'psx' may be used uninitialized in this function [-Wmaybe-uninitialized]
 1496 |         jnext, examine_super, nsuper, s, k1, k2, psi, psend, psx, nsrow, nscol,
      |                                                              ^~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
../Check/cholmod_write.c: In function 'cholmod_l_write_sparse':
../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]
  366 |     Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,
      |                                 ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
../Cholesky/cholmod_analyze.c: In function 'cholmod_l_analyze_p2':
../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
  419 |     Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,
      |                                                                     ^~~~
../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                             ^~~~~~~
../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]
  416 |     Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,
      |                                   ^~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
../Cholesky/cholmod_factorize.c:101:12: warning: argument 2 of type 'double[2]' with mismatched bound [-Warray-parameter=]
  101 |     double beta [2],    /* factorize beta*I+A or beta*I+A'*A */
      |     ~~~~~~~^~~~~~~~
In file included from ../Cholesky/cholmod_factorize.c:58:
../Include/cholmod_cholesky.h:168:46: note: previously declared as 'double *'
  168 | int cholmod_l_factorize_p (cholmod_sparse *, double *, SuiteSparse_long *,
      |                                              ^~~~~~~~
../Cholesky/cholmod_factorize.c: In function 'cholmod_l_factorize_p':
../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  111 |     Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;
      |                                     ^
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
In file included from ../Cholesky/cholmod_rowfac.c:161:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:163:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:165:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
In file included from ../Cholesky/cholmod_rowfac.c:169:
../Cholesky/t_cholmod_rowfac.c: In function 'r_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:171:
../Cholesky/t_cholmod_rowfac.c: In function 'c_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                                ^~
../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                                      ^~
../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                            ^~
../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   46 |     double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;
      |                  ^~
In file included from ../Cholesky/cholmod_rowfac.c:173:
../Cholesky/t_cholmod_rowfac.c: In function 'z_cholmod_rowfac_mask':
../Cholesky/t_cholmod_rowfac.c:50:53: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]
   50 |         use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;
      |                                                     ^~~~~
../Cholesky/cholmod_rowfac.c: At top level:
../Cholesky/cholmod_rowfac.c:577:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
  577 |     double beta [2],    /* factorize beta*I+A or beta*I+AA' */
      |     ~~~~~~~^~~~~~~~
In file included from ../Cholesky/cholmod_rowfac.c:103:
../Include/cholmod_cholesky.h:387:59: note: previously declared as 'double *'
  387 | int cholmod_l_rowfac (cholmod_sparse *, cholmod_sparse *, double *, size_t,
      |                                                           ^~~~~~~~
../Cholesky/cholmod_rowfac.c:602:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
  602 |     double beta [2],    /* factorize beta*I+A or beta*I+AA' */
      |     ~~~~~~~^~~~~~~~
In file included from ../Cholesky/cholmod_rowfac.c:103:
../Include/cholmod_cholesky.h:413:64: note: previously declared as 'double *'
  413 | int cholmod_l_rowfac_mask (cholmod_sparse *, cholmod_sparse *, double *, size_t,
      |                                                                ^~~~~~~~
../Cholesky/cholmod_rowfac.c:629:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
  629 |     double beta [2],    /* factorize beta*I+A or beta*I+AA' */
      |     ~~~~~~~^~~~~~~~
In file included from ../Cholesky/cholmod_rowfac.c:103:
../Include/cholmod_cholesky.h:434:65: note: previously declared as 'double *'
  434 | int cholmod_l_rowfac_mask2 (cholmod_sparse *, cholmod_sparse *, double *,
      |                                                                 ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
In file included from ../Cholesky/cholmod_solve.c:63:
../Cholesky/t_cholmod_solve.c: In function 'r_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
In file included from ../Cholesky/cholmod_solve.c:66:
../Cholesky/t_cholmod_solve.c: In function 'c_ldl_dsolve':
../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   61 |     double *Lx, *Yx, *Yz ;
      |                       ^~
../Cholesky/cholmod_solve.c: In function 'iperm':
../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]
  334 |     Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;
      |             ^~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
In file included from ../MatrixOps/cholmod_sdmult.c:44:
../MatrixOps/t_cholmod_sdmult.c: In function 'r_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:46:
../MatrixOps/t_cholmod_sdmult.c: In function 'c_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                               ^~
../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                                      ^~
../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                            ^~
../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
   49 |     double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;
      |                  ^~
In file included from ../MatrixOps/cholmod_sdmult.c:48:
../MatrixOps/t_cholmod_sdmult.c: In function 'z_cholmod_sdmult':
../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]
   52 |     Int packed, nrow, ncol, j, k, p, pend, kcol, i ;
      |                 ^~~~
../MatrixOps/cholmod_sdmult.c: At top level:
../MatrixOps/cholmod_sdmult.c:59:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
   59 |     double alpha [2],   /* scale factor for A */
      |     ~~~~~~~^~~~~~~~~
In file included from ../MatrixOps/cholmod_sdmult.c:36:
../Include/cholmod_matrixops.h:143:46: note: previously declared as 'double *'
  143 | int cholmod_l_sdmult (cholmod_sparse *, int, double *, double *,
      |                                              ^~~~~~~~
../MatrixOps/cholmod_sdmult.c:60:12: warning: argument 4 of type 'double[2]' with mismatched bound [-Warray-parameter=]
   60 |     double beta [2],    /* scale factor for Y */
      |     ~~~~~~~^~~~~~~~
In file included from ../MatrixOps/cholmod_sdmult.c:36:
../Include/cholmod_matrixops.h:143:56: note: previously declared as 'double *'
  143 | int cholmod_l_sdmult (cholmod_sparse *, int, double *, double *,
      |                                                        ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
../Modify/cholmod_rowadd.c:72:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
   72 |     double bk [2],      /* kth entry of the right-hand-side b */
      |     ~~~~~~~^~~~~~
In file included from ../Modify/cholmod_rowadd.c:24:
../Include/cholmod_modify.h:215:55: note: previously declared as 'double *'
  215 | int cholmod_l_rowadd_solve (size_t, cholmod_sparse *, double *,
      |                                                       ^~~~~~~~
../Modify/cholmod_rowadd.c:116:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
  116 |     double bk [2],      /* kth entry of the right hand side, b */
      |     ~~~~~~~^~~~~~
In file included from ../Modify/cholmod_rowadd.c:24:
../Include/cholmod_modify.h:241:54: note: previously declared as 'double *'
  241 | int cholmod_l_rowadd_mark (size_t, cholmod_sparse *, double *,
      |                                                      ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
../Modify/cholmod_rowdel.c:72:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
   72 |     double yk [2],      /* kth entry in the solution to A*y=b */
      |     ~~~~~~~^~~~~~
In file included from ../Modify/cholmod_rowdel.c:25:
../Include/cholmod_modify.h:294:55: note: previously declared as 'double *'
  294 | int cholmod_l_rowdel_solve (size_t, cholmod_sparse *, double *,
      |                                                       ^~~~~~~~
../Modify/cholmod_rowdel.c:104:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
  104 |     double yk [2],      /* kth entry in the solution to A*y=b */
      |     ~~~~~~~^~~~~~
In file included from ../Modify/cholmod_rowdel.c:25:
../Include/cholmod_modify.h:320:54: note: previously declared as 'double *'
  320 | int cholmod_l_rowdel_mark (size_t, cholmod_sparse *, double *,
      |                                                      ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
../Modify/cholmod_updown.c: In function 'cholmod_l_updown_mask2':
../Modify/cholmod_updown.c:433:40: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]
  433 |         *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;
      |                                        ^~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
In file included from ../Supernodal/cholmod_super_numeric.c:82:
../Supernodal/t_cholmod_super_numeric.c: In function 'r_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:84:
../Supernodal/t_cholmod_super_numeric.c: In function 'c_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                                 ^~
../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]
  108 |     double *Lx, *Ax, *Fx, *Az, *Fz, *C ;
      |                            ^~
In file included from ../Supernodal/cholmod_super_numeric.c:86:
../Supernodal/t_cholmod_super_numeric.c: In function 'z_cholmod_super_numeric':
../Supernodal/t_cholmod_super_numeric.c:249: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  249 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS) \
      | 
../Supernodal/t_cholmod_super_numeric.c:311: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  311 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  326 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:355: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  355 | #pragma omp parallel for private ( p, pend, pfend, pf, i, j, imap, q )  \
      | 
../Supernodal/t_cholmod_super_numeric.c:743: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  743 | #pragma omp parallel for num_threads(CHOLMOD_OMP_NUM_THREADS)   \
      | 
../Supernodal/t_cholmod_super_numeric.c:756: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  756 | #pragma omp parallel for private ( j, i, px, q )                \
      | 
../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]
  116 |         tail, nscol_new = 0;
      |         ^~~~
../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]
  113 |         pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,
      |         ^~
../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]
  111 |         *Previous;
      |          ^~~~~~~~
../Supernodal/cholmod_super_numeric.c: At top level:
../Supernodal/cholmod_super_numeric.c:102:12: warning: argument 3 of type 'double[2]' with mismatched bound [-Warray-parameter=]
  102 |     double beta [2],    /* beta*I is added to diagonal of matrix to factorize */
      |     ~~~~~~~^~~~~~~~
In file included from ../Supernodal/cholmod_super_numeric.c:60:
../Include/cholmod_supernodal.h:120:66: note: previously declared as 'double *'
  120 | int cholmod_l_super_numeric (cholmod_sparse *, cholmod_sparse *, double *,
      |                                                                  ^~~~~~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
In file included from ../Supernodal/cholmod_super_solve.c:26:
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'r_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
In file included from ../Supernodal/cholmod_super_solve.c:28:
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_lsolve':
../Supernodal/t_cholmod_super_solve.c:30:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   30 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
../Supernodal/t_cholmod_super_solve.c: In function 'c_cholmod_super_ltsolve':
../Supernodal/t_cholmod_super_solve.c:238:17: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  238 |         nsrow2, n, ps2, j, i, d, nrhs ;
      |                 ^
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
../Supernodal/cholmod_super_symbolic.c: In function 'cholmod_l_super_symbolic2':
../Supernodal/cholmod_super_symbolic.c:562:21: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]
  562 |                 Int totsize ;
      |                     ^~~~~~~
../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]
  185 |     double max_fraction;
      |            ^~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]
  184 |     const char* env_max_fraction;
      |                 ^~~~~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]
  183 |     size_t max_bytes;
      |            ^~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]
  182 |     const char* env_max_bytes;
      |                 ^~~~~~~~~~~~~
../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]
  181 |     const char* env_use_gpu;
      |                 ^~~~~~~~~~~
ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o 
make[5]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/CHOLMOD'
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD'
( cd Source ; make -f "/builddir/build/BUILD/R-4.1.2/etc/Makeconf" -f Makefile lib )
make[5]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD/Source'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c colamd.c -o colamd.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c colamd.c -o colamd_l.o
ar -rucs ../../COLAMD.a colamd.o colamd_l.o
make[5]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD/Source'
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/COLAMD'
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD'
( cd Source ; make -f "/builddir/build/BUILD/R-4.1.2/etc/Makeconf" -f Makefile lib )
make[5]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD/Source'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_1.c -o amd_i_1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_2.c -o amd_i_2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_order.c -o amd_i_order.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_control.c -o amd_i_control.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_info.c -o amd_i_info.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o
make[5]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD/Source'
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/AMD'
make[4]: Entering directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/SuiteSparse_config'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG -DNTIMER  -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c SuiteSparse_config.c -o SuiteSparse_config.o
ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
make[4]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src/SuiteSparse_config'
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -lflexiblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpwjIlMk/R.INSTALL30cc963c49e800/Matrix/src'
installing to /builddir/build/BUILD/R-4.1.2/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
Creating a generic function for 'diag' from package 'base' in package 'Matrix'
Creating a generic function for 'drop' from package 'base' in package 'Matrix'
Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
Creating a generic function for 'unname' from package 'base' in package 'Matrix'
Creating a generic function for 'norm' from package 'base' in package 'Matrix'
Creating a generic function for 'rcond' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
Creating a generic function for 'crossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'which' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM"
in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
** help
*** installing help indices
  converting help for package 'Matrix'
    finding HTML links ... done
    BunchKaufman-methods                    html  
    CAex                                    html  
    CHMfactor-class                         html  
    Cholesky-class                          html  
    Cholesky                                html  
    CsparseMatrix-class                     html  
    Diagonal                                html  
    Hilbert                                 html  
    KNex                                    html  
    KhatriRao                               html  
    LU-class                                html  
    Matrix-class                            html  
    Matrix                                  html  
    MatrixClass                             html  
    MatrixFactorization-class               html  
    RsparseMatrix-class                     html  
    Schur-class                             html  
    Schur                                   html  
    SparseM-conv                            html  
    Subassign-methods                       html  
    TsparseMatrix-class                     html  
    USCounties                              html  
    Xtrct-methods                           html  
    abIndex-class                           html  
    abIseq                                  html  
    all-methods                             html  
    all.equal-methods                       html  
    atomicVector-class                      html  
    band                                    html  
    bandSparse                              html  
    bdiag                                   html  
    boolean-matprod                         html  
    cBind                                   html  
    chol                                    html  
    chol2inv-methods                        html  
    colSums                                 html  
    compMatrix-class                        html  
    condest                                 html  
    dMatrix-class                           html  
    ddenseMatrix-class                      html  
    ddiMatrix-class                         html  
    denseMatrix-class                       html  
    dgCMatrix-class                         html  
    dgRMatrix-class                         html  
    dgTMatrix-class                         html  
    dgeMatrix-class                         html  
    diagU2N                                 html  
    diagonalMatrix-class                    html  
    dpoMatrix-class                         html  
    drop0                                   html  
    dsCMatrix-class                         html  
    dsRMatrix-class                         html  
    dsparseMatrix-class                     html  
    dsyMatrix-class                         html  
    dtCMatrix-class                         html  
    dtRMatrix-class-def                     html  
    dtpMatrix-class                         html  
    dtrMatrix-class                         html  
    expand                                  html  
    expm                                    html  
    externalFormats                         html  
    facmul                                  html  
    forceSymmetric                          html  
    formatSparseM                           html  
    generalMatrix-class                     html  
    graph2T                                 html  
    image-methods                           html  
    indMatrix-class                         html  
    index-class                             html  
    invPerm                                 html  
    is.na-methods                           html  
    is.null.DN                              html  
    isSymmetric-methods                     html  
    isTriangular                            html  
    kronecker-methods                       html  
    ldenseMatrix-class                      html  
    ldiMatrix-class                         html  
    lgeMatrix-class                         html  
    lsparseMatrix-classes                   html  
    lsyMatrix-class                         html  
    ltrMatrix-class                         html  
    lu                                      html  
    mat2triplet                             html  
    matrix-products                         html  
    nMatrix-class                           html  
    ndenseMatrix-class                      html  
    nearPD                                  html  
    ngeMatrix-class                         html  
    nnzero                                  html  
    norm                                    html  
    nsparseMatrix-classes                   html  
    nsyMatrix-class                         html  
    ntrMatrix-class                         html  
    number-class                            html  
    pMatrix-class                           html  
    printSpMatrix                           html  
    qr-methods                              html  
    rankMatrix                              html  
    rcond                                   html  
    rep2abI                                 html  
    replValue-class                         html  
    rleDiff-class                           html  
    rsparsematrix                           html  
    solve-methods                           html  
    spMatrix                                html  
    sparse.model.matrix                     html  
    sparseLU-class                          html  
    sparseMatrix-class                      html  
    sparseMatrix                            html  
    sparseQR-class                          html  
    sparseVector-class                      html  
    sparseVector                            html  
    symmetricMatrix-class                   html  
    symmpart                                html  
    triangularMatrix-class                  html  
    uniqTsparse                             html  
    unpack                                  html  
    unused-classes                          html  
    updown                                  html  
    wrld_1deg                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
Making 'packages.html' ... done
begin installing recommended package nlme
* installing *source* package 'nlme' ...
** package 'nlme' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/Rtmpyk8BfG/R.INSTALL30cec71822179c/nlme/src'
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c chol.f -o chol.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c corStruct.c -o corStruct.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gnls.c -o gnls.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c matrix.c -o matrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c nlOptimizer.c -o nlOptimizer.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c nlme.c -o nlme.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c nlmefit.c -o nlmefit.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pdMat.c -o pdMat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pythag.c -o pythag.o
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c rs.f -o rs.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/Rtmpyk8BfG/R.INSTALL30cec71822179c/nlme/src'
installing to /builddir/build/BUILD/R-4.1.2/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nlme'
    finding HTML links ... done
    ACF                                     html  
    ACF.gls                                 html  
    ACF.lme                                 html  
    Alfalfa                                 html  
    Assay                                   html  
    BodyWeight                              html  
    Cefamandole                             html  
    Coef                                    html  
    Covariate                               html  
    Covariate.varFunc                       html  
    Dialyzer                                html  
    Dim                                     html  
    Dim.corSpatial                          html  
    Dim.corStruct                           html  
    Dim.pdMat                               html  
    Earthquake                              html  
    Extract.pdMat                           html  
    Fatigue                                 html  
    Gasoline                                html  
    Glucose                                 html  
    Glucose2                                html  
    Gun                                     html  
    IGF                                     html  
    Initialize                              html  
    Initialize.corStruct                    html  
    Initialize.glsStruct                    html  
    Initialize.lmeStruct                    html  
    Initialize.reStruct                     html  
    Initialize.varFunc                      html  
    LDEsysMat                               html  
    Machines                                html  
    MathAchSchool                           html  
    MathAchieve                             html  
    Matrix                                  html  
    Matrix.pdMat                            html  
    Matrix.reStruct                         html  
    Meat                                    html  
    Milk                                    html  
    Muscle                                  html  
    Names                                   html  
    Names.formula                           html  
    Names.pdBlocked                         html  
    Names.pdMat                             html  
    Names.reStruct                          html  
    Nitrendipene                            html  
    Oats                                    html  
    Orthodont                               html  
    Ovary                                   html  
    Oxboys                                  html  
    Oxide                                   html  
    PBG                                     html  
    Phenobarb                               html  
    Pixel                                   html  
    Quinidine                               html  
    Rail                                    html  
    RatPupWeight                            html  
    Relaxin                                 html  
    Remifentanil                            html  
    Soybean                                 html  
    Spruce                                  html  
    Tetracycline1                           html  
    Tetracycline2                           html  
    VarCorr                                 html  
    Variogram                               html  
    Variogram.corExp                        html  
    Variogram.corGaus                       html  
    Variogram.corLin                        html  
    Variogram.corRatio                      html  
    Variogram.corSpatial                    html  
    Variogram.corSpher                      html  
    Variogram.default                       html  
    Variogram.gls                           html  
    Variogram.lme                           html  
    Wafer                                   html  
    Wheat                                   html  
    Wheat2                                  html  
    allCoef                                 html  
    anova.gls                               html  
    anova.lme                               html  
    as.matrix.corStruct                     html  
    as.matrix.pdMat                         html  
    as.matrix.reStruct                      html  
    asOneFormula                            html  
    asTable                                 html  
    augPred                                 html  
    balancedGrouped                         html  
    bdf                                     html  
    coef.corStruct                          html  
    coef.gnls                               html  
    coef.lmList                             html  
    coef.lme                                html  
    coef.modelStruct                        html  
    coef.pdMat                              html  
    coef.reStruct                           html  
    coef.varFunc                            html  
    collapse                                html  
    collapse.groupedData                    html  
    compareFits                             html  
    comparePred                             html  
    corAR1                                  html  
    corARMA                                 html  
    corCAR1                                 html  
    corClasses                              html  
    corCompSymm                             html  
    corExp                                  html  
    corFactor                               html  
    corFactor.corStruct                     html  
    corGaus                                 html  
    corLin                                  html  
    corMatrix                               html  
    corMatrix.corStruct                     html  
    corMatrix.pdMat                         html  
    corMatrix.reStruct                      html  
    corNatural                              html  
    corRatio                                html  
    corSpatial                              html  
    corSpher                                html  
    corSymm                                 html  
    ergoStool                               html  
    fdHess                                  html  
    fitted.glsStruct                        html  
    fitted.gnlsStruct                       html  
    fitted.lmList                           html  
    fitted.lme                              html  
    fitted.lmeStruct                        html  
    fitted.nlmeStruct                       html  
    fixed.effects                           html  
    fixef.lmList                            html  
    formula.pdBlocked                       html  
    formula.pdMat                           html  
    formula.reStruct                        html  
    gapply                                  html  
    getCovariate                            html  
    getCovariate.corStruct                  html  
    getCovariate.data.frame                 html  
    getCovariate.varFunc                    html  
    getCovariateFormula                     html  
    getData                                 html  
    getData.gls                             html  
    getData.lmList                          html  
    getData.lme                             html  
    getGroups                               html  
    getGroups.corStruct                     html  
    getGroups.data.frame                    html  
    getGroups.gls                           html  
    getGroups.lmList                        html  
    getGroups.lme                           html  
    getGroups.varFunc                       html  
    getGroupsFormula                        html  
    getResponse                             html  
    getResponseFormula                      html  
    getVarCov                               html  
    gls-internal                            html  
    gls                                     html  
    glsControl                              html  
    glsObject                               html  
    glsStruct                               html  
    gnls                                    html  
    gnlsControl                             html  
    gnlsObject                              html  
    gnlsStruct                              html  
    groupedData                             html  
    gsummary                                html  
    intervals                               html  
    intervals.gls                           html  
    intervals.lmList                        html  
    intervals.lme                           html  
    isBalanced                              html  
    isInitialized                           html  
    lmList                                  html  
    lmList.groupedData                      html  
    lme                                     html  
    lme.groupedData                         html  
    lme.lmList                              html  
    lmeControl                              html  
    lmeObject                               html  
    lmeStruct                               html  
    logDet                                  html  
    logDet.corStruct                        html  
    logDet.pdMat                            html  
    logDet.reStruct                         html  
    logLik.corStruct                        html  
    logLik.glsStruct                        html  
    logLik.gnls                             html  
    logLik.gnlsStruct                       html  
    logLik.lmList                           html  
    logLik.lme                              html  
    logLik.lmeStruct                        html  
    logLik.reStruct                         html  
    logLik.varFunc                          html  
    model.matrix.reStruct                   html  
    needUpdate                              html  
    needUpdate.modelStruct                  html  
    nlme                                    html  
    nlme.nlsList                            html  
    nlmeControl                             html  
    nlmeObject                              html  
    nlmeStruct                              html  
    nlsList                                 html  
    nlsList.selfStart                       html  
    pairs.compareFits                       html  
    pairs.lmList                            html  
    pairs.lme                               html  
    pdBlocked                               html  
    pdClasses                               html  
    pdCompSymm                              html  
    pdConstruct                             html  
    pdConstruct.pdBlocked                   html  
    pdDiag                                  html  
    pdFactor                                html  
    pdFactor.reStruct                       html  
    pdIdent                                 html  
    pdLogChol                               html  
    pdMat                                   html  
    pdMatrix                                html  
    pdMatrix.reStruct                       html  
    pdNatural                               html  
    pdSymm                                  html  
    phenoModel                              html  
    plot.ACF                                html  
    plot.Variogram                          html  
    plot.augPred                            html  
    plot.compareFits                        html  
    plot.gls                                html  
    plot.intervals.lmList                   html  
    plot.lmList                             html  
    plot.lme                                html  
    plot.nffGroupedData                     html  
    plot.nfnGroupedData                     html  
    plot.nmGroupedData                      html  
    plot.ranef.lmList                       html  
    plot.ranef.lme                          html  
    pooledSD                                html  
    predict.gls                             html  
    predict.gnls                            html  
    predict.lmList                          html  
    predict.lme                             html  
    predict.nlme                            html  
    print.summary.pdMat                     html  
    print.varFunc                           html  
    qqnorm.gls                              html  
    qqnorm.lme                              html  
    quinModel                               html  
    random.effects                          html  
    ranef.lmList                            html  
    ranef.lme                               html  
    reStruct                                html  
    recalc                                  html  
    recalc.corStruct                        html  
    recalc.modelStruct                      html  
    recalc.reStruct                         html  
    recalc.varFunc                          html  
    residuals.gls                           html  
    residuals.glsStruct                     html  
    residuals.gnlsStruct                    html  
    residuals.lmList                        html  
    residuals.lme                           html  
    residuals.lmeStruct                     html  
    residuals.nlmeStruct                    html  
    simulate.lme                            html  
    solve.pdMat                             html  
    solve.reStruct                          html  
    splitFormula                            html  
    summary.corStruct                       html  
    summary.gls                             html  
    summary.lmList                          html  
    summary.lme                             html  
    summary.modelStruct                     html  
    summary.nlsList                         html  
    summary.pdMat                           html  
    summary.varFunc                         html  
    update.modelStruct                      html  
    update.varFunc                          html  
    varClasses                              html  
    varComb                                 html  
    varConstPower                           html  
    varConstProp                            html  
    varExp                                  html  
    varFixed                                html  
    varFunc                                 html  
    varIdent                                html  
    varPower                                html  
    varWeights                              html  
    varWeights.glsStruct                    html  
    varWeights.lmeStruct                    html  
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
Making 'packages.html' ... done
begin installing recommended package survival
* installing *source* package 'survival' ...
** package 'survival' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/Rtmpq1A4Tw/R.INSTALL30cf0e27c3a600/survival/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agexact.c -o agexact.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agfit4.c -o agfit4.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agfit5.c -o agfit5.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agmart.c -o agmart.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agmart3.c -o agmart3.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agscore2.c -o agscore2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agsurv3.c -o agsurv3.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agsurv4.c -o agsurv4.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c agsurv5.c -o agsurv5.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cdecomp.c -o cdecomp.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chinv2.c -o chinv2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chinv3.c -o chinv3.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cholesky2.c -o cholesky2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cholesky3.c -o cholesky3.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cholesky5.c -o cholesky5.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chsolve2.c -o chsolve2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chsolve3.c -o chsolve3.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c chsolve5.c -o chsolve5.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c collapse.c -o collapse.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c concordance1.c -o concordance1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c concordance3.c -o concordance3.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c concordance5.c -o concordance5.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c cox_Rcallback.c -o cox_Rcallback.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxcount1.c -o coxcount1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxdetail.c -o coxdetail.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxexact.c -o coxexact.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxfit5.c -o coxfit5.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxfit6.c -o coxfit6.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxmart.c -o coxmart.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxmart2.c -o coxmart2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxph_wtest.c -o coxph_wtest.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxsafe.c -o coxsafe.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxscho.c -o coxscho.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxscore2.c -o coxscore2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxsurv1.c -o coxsurv1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxsurv2.c -o coxsurv2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dmatrix.c -o dmatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c doloop.c -o doloop.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c finegray.c -o finegray.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gchol.c -o gchol.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c multicheck.c -o multicheck.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c norisk.c -o norisk.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pyears1.c -o pyears1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pyears2.c -o pyears2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pyears3b.c -o pyears3b.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pystep.c -o pystep.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survConcordance.c -o survConcordance.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survdiff2.c -o survdiff2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survfit4.c -o survfit4.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survfitci.c -o survfitci.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survfitkm.c -o survfitkm.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survfitresid.c -o survfitresid.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survpenal.c -o survpenal.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survreg6.c -o survreg6.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survreg7.c -o survreg7.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survregc1.c -o survregc1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survregc2.c -o survregc2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c survsplit.c -o survsplit.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c tmerge.c -o tmerge.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c zph1.c -o zph1.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c zph2.c -o zph2.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agsurv3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o dmatrix.o doloop.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/Rtmpq1A4Tw/R.INSTALL30cf0e27c3a600/survival/src'
installing to /builddir/build/BUILD/R-4.1.2/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'survival'
    finding HTML links ... done
    Surv                                    html  
    Surv2                                   html  
    Surv2data                               html  
    Survmethods                             html  
    aareg                                   html  
    aeqSurv                                 html  
    aggregate.survfit                       html  
    agreg.fit                               html  
    aml                                     html  
    anova.coxph                             html  
    attrassign                              html  
    basehaz                                 html  
    bladder                                 html  
    blogit                                  html  
    cch                                     html  
    cgd                                     html  
    cgd0                                    html  
    cipoisson                               html  
    clogit                                  html  
    cluster                                 html  
    colon                                   html  
    concordance                             html  
    concordancefit                          html  
    cox.zph                                 html  
    coxph                                   html  
    coxph.control                           html  
    coxph.detail                            html  
    coxph.object                            html  
    coxph.wtest                             html  
    coxsurv.fit                             html  
    diabetic                                html  
    dsurvreg                                html  
    finegray                                html  
    flchain                                 html  
    frailty                                 html  
    gbsg                                    html  
    heart                                   html  
    is.ratetable                            html  
    kidney                                  html  
    levels.Surv                             html  
    lines.survfit                           html  
    logLik.coxph                            html  
    logan                                   html  
    lung                                    html  
    mgus                                    html  
    mgus2                                   html  
    model.frame.coxph                       html  
    model.matrix.coxph                      html  
    myeloid                                 html  
    myeloma                                 html  
    nafld                                   html  
    neardate                                html  
    nsk                                     html  
    nwtco                                   html  
    ovarian                                 html  
    pbc                                     html  
    pbcseq                                  html  
    plot.aareg                              html  
    plot.cox.zph                            html  
    plot.survfit                            html  
    predict.coxph                           html  
    predict.survreg                         html  
    print.aareg                             html  
    print.summary.coxph                     html  
    print.summary.survexp                   html  
    print.summary.survfit                   html  
    print.survfit                           html  
    pseudo                                  html  
    pspline                                 html  
    pyears                                  html  
    quantile.survfit                        html  
    ratetable                               html  
    ratetableDate                           html  
    rats                                    html  
    rats2                                   html  
    reliability                             html  
    residuals.coxph                         html  
    residuals.survfit                       html  
    residuals.survreg                       html  
    retinopathy                             html  
    rhDNase                                 html  
    ridge                                   html  
    rotterdam                               html  
    royston                                 html  
    rttright                                html  
    solder                                  html  
    stanford2                               html  
    statefig                                html  
    strata                                  html  
    summary.aareg                           html  
    summary.coxph                           html  
    summary.pyears                          html  
    summary.survexp                         html  
    summary.survfit                         html  
    survSplit                               html  
    survcheck                               html  
    survdiff                                html  
    survexp                                 html  
    survexp.fit                             html  
    survexp.object                          html  
    survexp.us                              html  
    survfit                                 html  
    survfit.coxph                           html  
    survfit.formula                         html  
    survfit.matrix                          html  
    survfit.object                          html  
    survfit0                                html  
    survfitcoxph.fit                        html  
    survival-deprecated                     html  
    survival-internal                       html  
    survobrien                              html  
    survreg                                 html  
    survreg.control                         html  
    survreg.distributions                   html  
    survreg.object                          html  
    survregDtest                            html  
    tcut                                    html  
    tmerge                                  html  
    tobin                                   html  
    transplant                              html  
    udca                                    html  
    untangle.specials                       html  
    uspop2                                  html  
    vcov.coxph                              html  
    veteran                                 html  
    xtfrm.Surv                              html  
    yates                                   html  
    yates_setup                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
Making 'packages.html' ... done
begin installing recommended package boot
* installing *source* package 'boot' ...
** package 'boot' successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'boot'
    finding HTML links ... done
    EEF.profile                             html  
    Imp.Estimates                           html  
    abc.ci                                  html  
    acme                                    html  
    aids                                    html  
    aircondit                               html  
    amis                                    html  
    aml                                     html  
    beaver                                  html  
    bigcity                                 html  
    boot-practicals                         html  
    boot                                    html  
    boot.array                              html  
    boot.ci                                 html  
    brambles                                html  
    breslow                                 html  
    calcium                                 html  
    cane                                    html  
    capability                              html  
    catsM                                   html  
    cav                                     html  
    cd4                                     html  
    cd4.nested                              html  
    censboot                                html  
    channing                                html  
    claridge                                html  
    cloth                                   html  
    co.transfer                             html  
    coal                                    html  
    control                                 html  
    corr                                    html  
    cum3                                    html  
    cv.glm                                  html  
    darwin                                  html  
    dogs                                    html  
    downs.bc                                html  
    ducks                                   html  
    empinf                                  html  
    envelope                                html  
    exp.tilt                                html  
    fir                                     html  
    freq.array                              html  
    frets                                   html  
    glm.diag                                html  
    glm.diag.plots                          html  
    gravity                                 html  
    hirose                                  html  
    imp.weights                             html  
    inv.logit                               html  
    islay                                   html  
    jack.after.boot                         html  
    k3.linear                               html  
    linear.approx                           html  
    lines.saddle.distn                      html  
    logit                                   html  
    manaus                                  html  
    melanoma                                html  
    motor                                   html  
    neuro                                   html  
    nitrofen                                html  
    nodal                                   html  
    norm.ci                                 html  
    nuclear                                 html  
    paulsen                                 html  
    plot.boot                               html  
    poisons                                 html  
    polar                                   html  
    print.boot                              html  
    print.bootci                            html  
    print.saddle.distn                      html  
    print.simplex                           html  
    remission                               html  
    saddle                                  html  
    saddle.distn                            html  
    saddle.distn.object                     html  
    salinity                                html  
    simplex                                 html  
    simplex.object                          html  
    smooth.f                                html  
    sunspot                                 html  
    survival                                html  
    tau                                     html  
    tilt.boot                               html  
    tsboot                                  html  
    tuna                                    html  
    urine                                   html  
    var.linear                              html  
    wool                                    html  
** building package indices
** testing if installed package can be loaded
* DONE (boot)
Making 'packages.html' ... done
begin installing recommended package cluster
* installing *source* package 'cluster' ...
** package 'cluster' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/Rtmp5GxWkZ/R.INSTALL30d0127607002c/cluster/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c clara.c -o clara.o
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c daisy.f -o daisy.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dysta.f -o dysta.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fanny.c -o fanny.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mona.c -o mona.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pam.c -o pam.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sildist.c -o sildist.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c spannel.c -o spannel.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c twins.c -o twins.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/Rtmp5GxWkZ/R.INSTALL30d0127607002c/cluster/src'
installing to /builddir/build/BUILD/R-4.1.2/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cluster'
    finding HTML links ... done
    agnes                                   html  
    agnes.object                            html  
    agriculture                             html  
    animals                                 html  
    bannerplot                              html  
    chorSub                                 html  
    clara                                   html  
    clara.object                            html  
    clusGap                                 html  
    clusplot.default                        html  
    clusplot.partition                      html  
    cluster-internal                        html  
    coef.hclust                             html  
    daisy                                   html  
    diana                                   html  
    dissimilarity.object                    html  
    ellipsoidhull                           html  
    fanny                                   html  
    fanny.object                            html  
    flower                                  html  
    lower.to.upper.tri.inds                 html  
    mona                                    html  
    mona.object                             html  
    pam                                     html  
    pam.object                              html  
    partition.object                        html  
    plantTraits                             html  
    plot.agnes                              html  
    plot.diana                              html  
    plot.mona                               html  
    plot.partition                          html  
    pltree                                  html  
    pluton                                  html  
    predict.ellipsoid                       html  
    print.agnes                             html  
    print.clara                             html  
    print.diana                             html  
    print.dissimilarity                     html  
    print.fanny                             html  
    print.mona                              html  
    print.pam                               html  
    ruspini                                 html  
    silhouette                              html  
    sizeDiss                                html  
    summary.agnes                           html  
    summary.clara                           html  
    summary.diana                           html  
    summary.mona                            html  
    summary.pam                             html  
    twins.object                            html  
    volume.ellipsoid                        html  
    votes.repub                             html  
    xclara                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
Making 'packages.html' ... done
begin installing recommended package codetools
* installing *source* package 'codetools' ...
** package 'codetools' successfully unpacked and MD5 sums checked
** using non-staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'codetools'
    finding HTML links ... done
    checkUsage                              html  
    codetools                               html  
    findGlobals                             html  
    showTree                                html  
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
Making 'packages.html' ... done
begin installing recommended package foreign
* installing *source* package 'foreign' ...
** package 'foreign' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmplTzuEc/R.INSTALL30d0776aacd919/foreign/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c R_systat.c -o R_systat.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Rdbfread.c -o Rdbfread.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Rdbfwrite.c -o Rdbfwrite.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c SASxport.c -o SASxport.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c avl.c -o avl.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c dbfopen.c -o dbfopen.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c file-handle.c -o file-handle.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c format.c -o format.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c minitab.c -o minitab.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pfm-read.c -o pfm-read.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sfm-read.c -o sfm-read.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c spss.c -o spss.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c stataread.c -o stataread.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmplTzuEc/R.INSTALL30d0776aacd919/foreign/src'
installing to /builddir/build/BUILD/R-4.1.2/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'foreign'
    finding HTML links ... done
    lookup.xport                            html  
    read.S                                  html  
    read.arff                               html  
    read.dbf                                html  
    read.dta                                html  
    read.epiinfo                            html  
    read.mtp                                html  
    read.octave                             html  
    read.spss                               html  
    read.ssd                                html  
    read.systat                             html  
    read.xport                              html  
    write.arff                              html  
    write.dbf                               html  
    write.dta                               html  
    write.foreign                           html  
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
Making 'packages.html' ... done
begin installing recommended package KernSmooth
* installing *source* package 'KernSmooth' ...
** package 'KernSmooth' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpAuZbLZ/R.INSTALL30d0c7389eeaf5/KernSmooth/src'
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c blkest.f -o blkest.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c cp.f -o cp.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dgedi.f -o dgedi.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dgefa.f -o dgefa.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c dgesl.f -o dgesl.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c linbin.f -o linbin.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c linbin2D.f -o linbin2D.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c locpoly.f -o locpoly.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c rlbin.f -o rlbin.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c sdiag.f -o sdiag.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gfortran -m32 -fno-optimize-sibling-calls  -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection --no-optimize-sibling-calls  -c sstdiag.f -o sstdiag.o
f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lflexiblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpAuZbLZ/R.INSTALL30d0c7389eeaf5/KernSmooth/src'
installing to /builddir/build/BUILD/R-4.1.2/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'KernSmooth'
    finding HTML links ... done
    bkde                                    html  
    bkde2D                                  html  
    bkfe                                    html  
    dpih                                    html  
    dpik                                    html  
    dpill                                   html  
    locpoly                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
Making 'packages.html' ... done
begin installing recommended package rpart
* installing *source* package 'rpart' ...
** package 'rpart' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpEvSaxx/R.INSTALL30d1115449481b/rpart/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c anova.c -o anova.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c anovapred.c -o anovapred.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c branch.c -o branch.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c bsplit.c -o bsplit.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c choose_surg.c -o choose_surg.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c fix_cp.c -o fix_cp.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c free_tree.c -o free_tree.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gini.c -o gini.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c graycode.c -o graycode.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c insert_split.c -o insert_split.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c make_cp_list.c -o make_cp_list.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c make_cp_table.c -o make_cp_table.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mysort.c -o mysort.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c nodesplit.c -o nodesplit.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c partition.c -o partition.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c poisson.c -o poisson.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pred_rpart.c -o pred_rpart.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c print_tree.c -o print_tree.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rpart.c -o rpart.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rpart_callback.c -o rpart_callback.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rpartexp.c -o rpartexp.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rpartexp2.c -o rpartexp2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rpcountup.c -o rpcountup.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rpmatrix.c -o rpmatrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rundown.c -o rundown.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rundown2.c -o rundown2.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c surrogate.c -o surrogate.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c usersplit.c -o usersplit.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c xpred.c -o xpred.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c xval.c -o xval.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpEvSaxx/R.INSTALL30d1115449481b/rpart/src'
installing to /builddir/build/BUILD/R-4.1.2/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rpart'
    finding HTML links ... done
    car.test.frame                          html  
    car90                                   html  
    cu.summary                              html  
    kyphosis                                html  
    labels.rpart                            html  
    meanvar.rpart                           html  
    na.rpart                                html  
    path.rpart                              html  
    plot.rpart                              html  
    plotcp                                  html  
    post.rpart                              html  
    predict.rpart                           html  
    print.rpart                             html  
    printcp                                 html  
    prune.rpart                             html  
    residuals.rpart                         html  
    rpart-internal                          html  
    rpart                                   html  
    rpart.control                           html  
    rpart.exp                               html  
    rpart.object                            html  
    rsq.rpart                               html  
    snip.rpart                              html  
    solder.balance                          html  
    stagec                                  html  
    summary.rpart                           html  
    text.rpart                              html  
    xpred.rpart                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
Making 'packages.html' ... done
begin installing recommended package class
* installing *source* package 'class' ...
** package 'class' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpONC5du/R.INSTALL30d19463c40f04/class/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c class.c -o class.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o class.so class.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpONC5du/R.INSTALL30d19463c40f04/class/src'
installing to /builddir/build/BUILD/R-4.1.2/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'class'
    finding HTML links ... done
    SOM                                     html  
    batchSOM                                html  
    condense                                html  
    knn                                     html  
    knn.cv                                  html  
    knn1                                    html  
    lvq1                                    html  
    lvq2                                    html  
    lvq3                                    html  
    lvqinit                                 html  
    lvqtest                                 html  
    multiedit                               html  
    olvq1                                   html  
    reduce.nn                               html  
    somgrid                                 html  
** building package indices
** testing if installed package can be loaded
* DONE (class)
Making 'packages.html' ... done
begin installing recommended package nnet
* installing *source* package 'nnet' ...
** package 'nnet' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpqOFH5F/R.INSTALL30d1bde59932c/nnet/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c nnet.c -o nnet.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o nnet.so nnet.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpqOFH5F/R.INSTALL30d1bde59932c/nnet/src'
installing to /builddir/build/BUILD/R-4.1.2/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nnet'
    finding HTML links ... done
    class.ind                               html  
    multinom                                html  
    nnet.Hess                               html  
    nnet                                    html  
    predict.nnet                            html  
    which.is.max                            html  
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
Making 'packages.html' ... done
begin installing recommended package spatial
* installing *source* package 'spatial' ...
** package 'spatial' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpsMHHmo/R.INSTALL30d1e669000d36/spatial/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c krc.c -o krc.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pps.c -o pps.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpsMHHmo/R.INSTALL30d1e669000d36/spatial/src'
installing to /builddir/build/BUILD/R-4.1.2/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'spatial'
    finding HTML links ... done
    Kaver                                   html  
    Kenvl                                   html  
    Kfn                                     html  
    Psim                                    html  
    SSI                                     html  
    Strauss                                 html  
    anova.trls                              html  
    correlogram                             html  
    expcov                                  html  
    ppgetregion                             html  
    ppinit                                  html  
    pplik                                   html  
    ppregion                                html  
    predict.trls                            html  
    prmat                                   html  
    semat                                   html  
    surf.gls                                html  
    surf.ls                                 html  
    trls.influence                          html  
    trmat                                   html  
    variogram                               html  
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
Making 'packages.html' ... done
begin installing recommended package mgcv
* installing *source* package 'mgcv' ...
** package 'mgcv' successfully unpacked and MD5 sums checked
** using non-staged installation
** libs
make[3]: Entering directory '/tmp/RtmpriDuyW/R.INSTALL30d21768b19eae/mgcv/src'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c coxph.c -o coxph.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c davies.c -o davies.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c discrete.c -o discrete.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c gdi.c -o gdi.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c init.c -o init.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c magic.c -o magic.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mat.c -o mat.o
mat.c: In function 'Rlanczos':
mat.c:3623:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
 3623 |   for (i=0;i< *n+1;i++) if (q[i]) FREE(q[i]);FREE(q);
      |   ^~~
In file included from mat.c:58:
mgcv.h:62:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
   62 | #define FREE R_chk_free
      |              ^~~~~~~~~~
mat.c:3623:46: note: in expansion of macro 'FREE'
 3623 |   for (i=0;i< *n+1;i++) if (q[i]) FREE(q[i]);FREE(q);
      |                                              ^~~~
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c matrix.c -o matrix.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mgcv.c -o mgcv.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c misc.c -o misc.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c mvn.c -o mvn.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c qp.c -o qp.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c soap.c -o soap.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sparse-smooth.c -o sparse-smooth.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c sparse.c -o sparse.o
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c tprs.c -o tprs.o
gcc -m32 -shared -L/builddir/build/BUILD/R-4.1.2/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lflexiblas -lgfortran -lm -lquadmath -fopenmp -L/builddir/build/BUILD/R-4.1.2/lib -lR
make[3]: Leaving directory '/tmp/RtmpriDuyW/R.INSTALL30d21768b19eae/mgcv/src'
installing to /builddir/build/BUILD/R-4.1.2/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mgcv'
    finding HTML links ... done
    Beta                                    html  
    FFdes                                   html  
    Predict.matrix                          html  
    Predict.matrix.cr.smooth                html  
    Predict.matrix.soap.film                html  
    Rrank                                   html  
    Sl.initial.repara                       html  
    Sl.repara                               html  
    Sl.setup                                html  
    Tweedie                                 html  
    XWXd                                    html  
    anova.gam                               html  
    bam                                     html  
    bam.update                              html  
    bandchol                                html  
    blas.thread.test                        html  
    bug.reports.mgcv                        html  
    cSplineDes                              html  
    chol.down                               html  
    choose.k                                html  
    columb                                  html  
    concurvity                              html  
    coxph                                   html  
    coxpht                                  html  
    dDeta                                   html  
    exclude.too.far                         html  
    extract.lme.cov                         html  
    family.mgcv                             html  
    fix.family.link                         html  
    fixDependence                           html  
    formXtViX                               html  
    formula.gam                             html  
    fs.test                                 html  
    full.score                              html  
    gam                                     html  
    gam.check                               html  
    gam.control                             html  
    gam.convergence                         html  
    gam.fit                                 html  
    gam.fit3                                html  
    gam.fit5.post.proc                      html  
    gam.mh                                  html  
    gam.models                              html  
    gam.outer                               html  
    gam.reparam                             html  
    gam.scale                               html  
    gam.selection                           html  
    gam.side                                html  
    gam.vcomp                               html  
    gam2objective                           html  
    gamObject                               html  
    gamSim                                  html  
    gamlss.etamu                            html  
    gamlss.gH                               html  
    gamm                                    html  
    gammals                                 html  
    gaulss                                  html  
    get.var                                 html  
    gevlss                                  html  
    ginla                                   html  
    gumbls                                  html  
    identifiability                         html  
    in.out                                  html  
    inSide                                  html  
    influence.gam                           html  
    initial.sp                              html  
    interpret.gam                           html  
    jagam                                   html  
    k.check                                 html  
    ldTweedie                               html  
    ldetS                                   html  
    linear.functional.terms                 html  
    logLik.gam                              html  
    ls.size                                 html  
    magic                                   html  
    magic.post.proc                         html  
    mgcv-FAQ                                html  
    mgcv-package                            html  
    mgcv-parallel                           html  
    mini.roots                              html  
    missing.data                            html  
    model.matrix.gam                        html  
    mono.con                                html  
    mroot                                   html  
    multinom                                html  
    mvn                                     html  
    negbin                                  html  
    new.name                                html  
    notExp                                  html  
    notExp2                                 html  
    null.space.dimension                    html  
    ocat                                    html  
    one.se.rule                             html  
    pcls                                    html  
    pdIdnot                                 html  
    pdTens                                  html  
    pen.edf                                 html  
    place.knots                             html  
    plot.gam                                html  
    polys.plot                              html  
    predict.bam                             html  
    predict.gam                             html  
    print.gam                               html  
    psum.chisq                              html  
    qq.gam                                  html  
    rTweedie                                html  
    random.effects                          html  
    residuals.gam                           html  
    rig                                     html  
    rmvn                                    html  
    s                                       html  
    scat                                    html  
    sdiag                                   html  
    shash                                   html  
    single.index                            html  
    slanczos                                html  
    smooth.construct                        html  
    smooth.construct.ad.smooth.spec         html  
    smooth.construct.bs.smooth.spec         html  
    smooth.construct.cr.smooth.spec         html  
    smooth.construct.ds.smooth.spec         html  
    smooth.construct.fs.smooth.spec         html  
    smooth.construct.gp.smooth.spec         html  
    smooth.construct.mrf.smooth.spec        html  
    smooth.construct.ps.smooth.spec         html  
    smooth.construct.re.smooth.spec         html  
    smooth.construct.so.smooth.spec         html  
    smooth.construct.sos.smooth.spec        html  
    smooth.construct.t2.smooth.spec         html  
    smooth.construct.tensor.smooth.spec     html  
    smooth.construct.tp.smooth.spec         html  
    smooth.info                             html  
    smooth.terms                            html  
    smooth2random                           html  
    smoothCon                               html  
    sp.vcov                                 html  
    spasm.construct                         html  
    step.gam                                html  
    summary.gam                             html  
    t2                                      html  
    te                                      html  
    tensor.prod.model.matrix                html  
    totalPenaltySpace                       html  
    trichol                                 html  
    trind.generator                         html  
    twlss                                   html  
    uniquecombs                             html  
    vcov.gam                                html  
    vis.gam                                 html  
    ziP                                     html  
    ziplss                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
Making 'packages.html' ... done
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library/Recommended'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
building/updating vignettes for package 'stats' ...
processing 'reshape.Rnw'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 11.0.13
Java home path   : /usr/lib/jvm/java-11-openjdk-11.0.13.0.8-2.fc36.i386
Java compiler    : not present
Java headers gen.: 
Java archive tool: 
trying to compile and link a JNI program 
detected JNI cpp flags    : 
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
make[2]: Entering directory '/tmp/Rjavareconf.oH4p0L'
gcc -m32 -I"/builddir/build/BUILD/R-4.1.2/include" -DNDEBUG   -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c conftest.c -o conftest.o
conftest.c:1:10: fatal error: jni.h: No such file or directory
    1 | #include <jni.h>
      |          ^~~~~~~
compilation terminated.
make[2]: *** [/builddir/build/BUILD/R-4.1.2/etc/Makeconf:168: conftest.o] Error 1
make[2]: Leaving directory '/tmp/Rjavareconf.oH4p0L'
Unable to compile a JNI program
JAVA_HOME        : /usr/lib/jvm/java-11-openjdk-11.0.13.0.8-2.fc36.i386
Java library path: 
JNI cpp flags    : 
JNI linker flags : 
Updating Java configuration in /builddir/build/BUILD/R-4.1.2
Done.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2'
+ cd src/nmath/standalone
+ make
(cd ../../include; make Rmath.h)
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include'
make[1]: 'Rmath.h' is up to date.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include'
Copying source files
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making qnbinom_mu.d from qnbinom_mu.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.o
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c std_unif.c -o std_unif.o
ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone'
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c mlutils.c -o mlutils.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c d1mach.c -o d1mach.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c i1mach.c -o i1mach.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmax2.c -o fmax2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fmin2.c -o fmin2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fprec.c -o fprec.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fround.c -o fround.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ftrunc.c -o ftrunc.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sign.c -o sign.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c fsign.c -o fsign.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imax2.c -o imax2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c imin2.c -o imin2.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c chebyshev.c -o chebyshev.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c log1p.c -o log1p.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgammacor.c -o lgammacor.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gammalims.c -o gammalims.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c stirlerr.c -o stirlerr.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bd0.c -o bd0.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma.c -o gamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lgamma.c -o lgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c gamma_cody.c -o gamma_cody.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c beta.c -o beta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c lbeta.c -o lbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c polygamma.c -o polygamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c cospi.c -o cospi.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_i.c -o bessel_i.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_j.c -o bessel_j.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_k.c -o bessel_k.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bessel_y.c -o bessel_y.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c choose.c -o choose.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c snorm.c -o snorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c sexp.c -o sexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgamma.c -o dgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgamma.c -o pgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgamma.c -o qgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgamma.c -o rgamma.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbeta.c -o dbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbeta.c -o pbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbeta.c -o qbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbeta.c -o rbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dunif.c -o dunif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c punif.c -o punif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qunif.c -o qunif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c runif.c -o runif.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnorm.c -o dnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnorm.c -o pnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnorm.c -o qnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnorm.c -o rnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlnorm.c -o dlnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plnorm.c -o plnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlnorm.c -o qlnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlnorm.c -o rlnorm.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c df.c -o df.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pf.c -o pf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qf.c -o qf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rf.c -o rf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnf.c -o dnf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dt.c -o dt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pt.c -o pt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qt.c -o qt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rt.c -o rt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnt.c -o dnt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dchisq.c -o dchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pchisq.c -o pchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qchisq.c -o qchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rchisq.c -o rchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnchisq.c -o rnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dbinom.c -o dbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pbinom.c -o pbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qbinom.c -o qbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rbinom.c -o rbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rmultinom.c -o rmultinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dcauchy.c -o dcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pcauchy.c -o pcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qcauchy.c -o qcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rcauchy.c -o rcauchy.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dexp.c -o dexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pexp.c -o pexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qexp.c -o qexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rexp.c -o rexp.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dgeom.c -o dgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pgeom.c -o pgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qgeom.c -o qgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rgeom.c -o rgeom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dhyper.c -o dhyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c phyper.c -o phyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qhyper.c -o qhyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rhyper.c -o rhyper.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbinom.c -o dnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbinom.c -o pnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom.c -o qnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbinom_mu.c -o qnbinom_mu.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rnbinom.c -o rnbinom.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dpois.c -o dpois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ppois.c -o ppois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qpois.c -o qpois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rpois.c -o rpois.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dweibull.c -o dweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pweibull.c -o pweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qweibull.c -o qweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rweibull.c -o rweibull.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dlogis.c -o dlogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c plogis.c -o plogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qlogis.c -o qlogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c rlogis.c -o rlogis.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnchisq.c -o dnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnchisq.c -o pnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnchisq.c -o qnchisq.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c dnbeta.c -o dnbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnbeta.c -o pnbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnbeta.c -o qnbeta.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnf.c -o pnf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c pnt.c -o pnt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnf.c -o qnf.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qnt.c -o qnt.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ptukey.c -o ptukey.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c qtukey.c -o qtukey.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c toms708.c -o toms708.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wilcox.c -o wilcox.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c signrank.c -o signrank.lo
gcc -m32 -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c std_unif.c -o std_unif.lo
gcc -m32 -shared -fopenmp -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -o libRmath.so  mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath/standalone'
+ make pdf
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX ...........................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX ...............
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ...............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX .........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'MASS' ...
Converting parsed Rd's to LaTeX ...............
collecting LaTeX docs for package 'lattice' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'Matrix' ...
Converting parsed Rd's to LaTeX ............
collecting LaTeX docs for package 'nlme' ...
Converting parsed Rd's to LaTeX ............................
collecting LaTeX docs for package 'survival' ...
Converting parsed Rd's to LaTeX ............
collecting LaTeX docs for package 'boot' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'cluster' ...
Converting parsed Rd's to LaTeX .....
collecting LaTeX docs for package 'codetools' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'foreign' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'KernSmooth' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'rpart' ...
Converting parsed Rd's to LaTeX ..
collecting LaTeX docs for package 'class' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'nnet' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'spatial' ...
Converting parsed Rd's to LaTeX ..
collecting LaTeX docs for package 'mgcv' ...
Converting parsed Rd's to LaTeX ...............
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-05-07>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
(/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
(/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.
Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.
) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
No file fullrefman.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv
e/texmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont ca
n be used only with embedded Type1 fonts
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplri' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplro' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvro' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmri' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmro' already exists, duplica
tes ignored
}] [1] [2] [1] [2] (./base-pkg.tex
Chapter 1.
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [3] [4]
Underfull \hbox (badness 6995) in paragraph at lines 143--151
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As
Underfull \hbox (badness 4995) in paragraph at lines 143--151
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[5]
Underfull \hbox (badness 10000) in paragraph at lines 212--217
[]\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/
ptm/m/n/10 is true, there are 10 such
Underfull \hbox (badness 1675) in paragraph at lines 212--217
\T1/zi4/m/n/10 "longdouble.<kind>" \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T
1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor-
[6] [7]
Underfull \hbox (badness 1178) in paragraph at lines 322--325
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[8] [9] [10]
Underfull \hbox (badness 2556) in paragraph at lines 561--567
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[11] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[14] [15] [16] [17] [18] [19] [20] [21] [22]
(/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25]
Underfull \hbox (badness 10000) in paragraph at lines 1567--1573
[26] [27] [28] [29] [30] [31]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[32] [33] [34] [35] [36] [37] [38]
Underfull \hbox (badness 10000) in paragraph at lines 2492--2494
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by
Underfull \hbox (badness 10000) in paragraph at lines 2495--2500
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via
Underfull \hbox (badness 1102) in paragraph at lines 2495--2500
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51]
Underfull \vbox (badness 10000) has occurred while \output is active [52]
[53] [54] [55] [56] [57] [58]
Underfull \hbox (badness 10000) in paragraph at lines 3890--3892
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73]
[74] [75] [76]
Underfull \hbox (badness 2521) in paragraph at lines 5180--5182
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91]
[92] [93]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[94] [95] [96] [97] [98] [99]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 :
[100] [101] [102]
Underfull \hbox (badness 10000) in paragraph at lines 7020--7023
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[103] [104]
Underfull \hbox (badness 6063) in paragraph at lines 7202--7208
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
Underfull \hbox (badness 2343) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-
Underfull \hbox (badness 1708) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when
Underfull \hbox (badness 1831) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[105]
Underfull \hbox (badness 1303) in paragraph at lines 7264--7271
[]\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio
n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. 
This reads the
Underfull \hbox (badness 2111) in paragraph at lines 7275--7280
[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
 one of the X11 se-lec-tions may be able to do so via
[106] [107]
Underfull \vbox (badness 10000) has occurred while \output is active [108]
[109] [110]
Underfull \hbox (badness 1077) in paragraph at lines 7593--7599
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater
Underfull \hbox (badness 1231) in paragraph at lines 7593--7599
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[111] [112] [113] [114] [115]
Underfull \hbox (badness 2096) in paragraph at lines 7948--7952
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[116] [117]
Underfull \hbox (badness 2351) in paragraph at lines 8062--8065
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[118] [119] [120] [121] [122]
Underfull \hbox (badness 4479) in paragraph at lines 8388--8399
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[123] [124] [125] [126] [127]
Underfull \hbox (badness 1629) in paragraph at lines 8839--8851
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
Underfull \hbox (badness 1609) in paragraph at lines 8839--8851
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which
Underfull \hbox (badness 2426) in paragraph at lines 8839--8851
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
Underfull \hbox (badness 1178) in paragraph at lines 9596--9600
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150]
[151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
Underfull \hbox (badness 6396) in paragraph at lines 11228--11236
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
Underfull \hbox (badness 1946) in paragraph at lines 11228--11236
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173]
[174] [175] [176]
Underfull \hbox (badness 4569) in paragraph at lines 12377--12381
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment
Underfull \hbox (badness 2401) in paragraph at lines 12377--12381
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200]
Underfull \hbox (badness 2253) in paragraph at lines 14062--14064
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[201]
Underfull \hbox (badness 1565) in paragraph at lines 14138--14142
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[202]
Underfull \hbox (badness 4927) in paragraph at lines 14182--14184
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[203]
Underfull \hbox (badness 3148) in paragraph at lines 14284--14289
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[204]
Underfull \hbox (badness 1466) in paragraph at lines 14331--14334
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[205] [206]
Underfull \hbox (badness 10000) in paragraph at lines 14458--14462
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14469--14472
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[207] [208] [209] [210]
Underfull \hbox (badness 3965) in paragraph at lines 14766--14770
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222]
Underfull \hbox (badness 4429) in paragraph at lines 15546--15549
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[223]
Underfull \hbox (badness 10000) in paragraph at lines 15652--15654
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls
Underfull \hbox (badness 1215) in paragraph at lines 15652--15654
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see
Underfull \hbox (badness 10000) in paragraph at lines 15674--15679
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls
Underfull \hbox (badness 1558) in paragraph at lines 15674--15679
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not
Underfull \hbox (badness 10000) in paragraph at lines 15686--15690
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
Underfull \hbox (badness 2426) in paragraph at lines 15686--15690
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[224]
Underfull \hbox (badness 2035) in paragraph at lines 15725--15729
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[225]
Underfull \vbox (badness 10000) has occurred while \output is active [226]
[227] [228] [229] [230] [231] [232] [233]
Underfull \hbox (badness 2452) in paragraph at lines 16338--16342
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 16338--16342
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[234] [235] [236]
Underfull \hbox (badness 1092) in paragraph at lines 16511--16516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[237] [238] [239]
Underfull \hbox (badness 6741) in paragraph at lines 16764--16768
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[240] [241] [242] [243] [244] [245] [246] [247] [248]
Underfull \vbox (badness 10000) has occurred while \output is active [249]
[250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1478) in paragraph at lines 18113--18116
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[259] [260] [261]
Underfull \hbox (badness 10000) in paragraph at lines 18381--18383
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1442) in paragraph at lines 18980--18982
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[271] [272] [273] [274] [275]
Underfull \hbox (badness 10000) in paragraph at lines 19311--19317
[276] [277] [278]
Underfull \hbox (badness 1248) in paragraph at lines 19556--19559
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[279] [280] [281] [282]
Underfull \hbox (badness 4739) in paragraph at lines 19819--19821
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[283] [284] [285] [286]
Underfull \hbox (badness 1603) in paragraph at lines 20046--20049
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[287] [288] [289]
Underfull \hbox (badness 1596) in paragraph at lines 20273--20278
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[290] [291] [292] [293] [294] [295] [296] [297] [298] [299]
Underfull \hbox (badness 2469) in paragraph at lines 20878--20883
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and
[300]
Underfull \hbox (badness 10000) in paragraph at lines 20972--20976
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory
[301] [302]
Underfull \hbox (badness 1014) in paragraph at lines 21142--21147
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314]
Underfull \hbox (badness 1264) in paragraph at lines 21991--21996
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[315]
Underfull \hbox (badness 4441) in paragraph at lines 22020--22023
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325]
Underfull \hbox (badness 6047) in paragraph at lines 22794--22796
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337]
[338] [339] [340] [341] [342]
Underfull \hbox (badness 10000) in paragraph at lines 23874--23880
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 23874--23880
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[343] [344] [345] [346] [347] [348] [349] [350]
Underfull \hbox (badness 2790) in paragraph at lines 24375--24378
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24375--24378
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[351] [352] [353]
Underfull \hbox (badness 1194) in paragraph at lines 24664--24667
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[354] [355] [356]
Underfull \hbox (badness 2368) in paragraph at lines 24871--24877
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,
Underfull \hbox (badness 4981) in paragraph at lines 24871--24877
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[357] [358] [359] [360] [361] [362]
Underfull \hbox (badness 10000) in paragraph at lines 25256--25259
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[363] [364] [365] [366] [367] [368] [369] [370] [371]
Underfull \hbox (badness 10000) in paragraph at lines 25876--25878
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 1038) in paragraph at lines 26737--26745
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially
Underfull \hbox (badness 1735) in paragraph at lines 26737--26745
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-
Underfull \hbox (badness 1292) in paragraph at lines 26737--26745
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set
Underfull \hbox (badness 1881) in paragraph at lines 26746--26749
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 26770--26772
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[384] [385]
Underfull \hbox (badness 2142) in paragraph at lines 26911--26915
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 26968--26973
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[386] [387] [388]
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27275--27278
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[389]
Underfull \hbox (badness 2689) in paragraph at lines 27301--27303
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
Underfull \hbox (badness 10000) in paragraph at lines 27336--27341
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27342--27353
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27342--27353
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
Underfull \hbox (badness 7203) in paragraph at lines 27354--27357
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and
[390] [391] [392] [393] [394] [395] [396] [397]
Underfull \hbox (badness 10000) in paragraph at lines 27901--27904
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[398]
Underfull \hbox (badness 7925) in paragraph at lines 27982--27986
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to
Underfull \hbox (badness 1622) in paragraph at lines 27982--27986
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 6125) in paragraph at lines 27987--27996
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
[411] [412]
Underfull \hbox (badness 2726) in paragraph at lines 28935--28938
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423]
Underfull \hbox (badness 1603) in paragraph at lines 29685--29688
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[424] [425] [426] [427] [428] [429]
Underfull \vbox (badness 10000) has occurred while \output is active [430]
[431] [432] [433] [434] [435] [436] [437]
Underfull \hbox (badness 1533) in paragraph at lines 30713--30716
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[438] [439]
Underfull \hbox (badness 1163) in paragraph at lines 30876--30887
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450]
Underfull \vbox (badness 10000) has occurred while \output is active [451]
[452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463]
Underfull \hbox (badness 10000) in paragraph at lines 32539--32543
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 32539--32543
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[464]
Underfull \hbox (badness 3557) in paragraph at lines 32560--32562
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 32563--32567
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/
10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht
tps : / / www . pcre . org /
[465] [466] [467] [468] [469] [470] [471] [472]
Underfull \hbox (badness 1655) in paragraph at lines 33157--33159
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484]
[485] [486] [487] [488] [489] [490]
Underfull \hbox (badness 2261) in paragraph at lines 34349--34354
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
Underfull \hbox (badness 10000) in paragraph at lines 34376--34382
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
Underfull \hbox (badness 1484) in paragraph at lines 34376--34382
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526]
[527]
Underfull \hbox (badness 10000) in paragraph at lines 36987--36989
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[528] [529] [530] [531] [532] [533] [534] [535]
Underfull \hbox (badness 1072) in paragraph at lines 37584--37588
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 37589--37593
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
Underfull \hbox (badness 10000) in paragraph at lines 37619--37625
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 37619--37625
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 37619--37625
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 37634--37641
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[536] [537] [538] [539]
Underfull \hbox (badness 2644) in paragraph at lines 37866--37870
[]\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[540] [541]
Underfull \hbox (badness 1142) in paragraph at lines 38018--38024
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553]
[554] [555] [556] [557] [558] [559]
Underfull \hbox (badness 1565) in paragraph at lines 39297--39299
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[560] [561] [562] [563] [564] [565] [566] [567] [568]
Underfull \hbox (badness 1137) in paragraph at lines 39887--39893
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
Underfull \hbox (badness 4967) in paragraph at lines 39906--39911
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[569] [570]
Underfull \hbox (badness 1616) in paragraph at lines 40026--40031
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[571] [572] [573] [574] [575] [576] [577] [578]
Underfull \hbox (badness 1472) in paragraph at lines 40568--40571
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590]
[591]
Underfull \hbox (badness 10000) in paragraph at lines 41487--41491
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[592] [593] [594] [595]
Underfull \hbox (badness 10000) in paragraph at lines 41738--41741
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[596] [597] [598]
Underfull \hbox (badness 10000) in paragraph at lines 41922--41926
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[599] [600] [601] [602] [603] [604] [605] [606]
Underfull \hbox (badness 10000) in paragraph at lines 42547--42550
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618]
[619]
Underfull \hbox (badness 1990) in paragraph at lines 43469--43477
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 43469--43477
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[620] [621] [622] [623] [624] [625] [626] [627]
Underfull \hbox (badness 1917) in paragraph at lines 43975--43982
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[628] [629] [630] [631] [632] [633]
Underfull \hbox (badness 2452) in paragraph at lines 44428--44434
[][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 ,
[634] [635] [636] [637] [638] [639]
Underfull \hbox (badness 3668) in paragraph at lines 44802--44804
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[640]
Underfull \hbox (badness 2401) in paragraph at lines 44932--44936
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[641] [642] [643]
Underfull \hbox (badness 2111) in paragraph at lines 45139--45144
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.
[644]
Underfull \hbox (badness 10000) in paragraph at lines 45160--45165
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[645] [646] [647]
Underfull \hbox (badness 4001) in paragraph at lines 45385--45387
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[648] [649] [650] [651] [652]
Underfull \hbox (badness 5417) in paragraph at lines 45750--45754
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[653]
Underfull \hbox (badness 10000) in paragraph at lines 45811--45815
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[654]) (./compiler-pkg.tex
Chapter 2.
[655] [656] [657] [658]) (./datasets-pkg.tex
Chapter 3.
[659] [660] [661] [662] [663] [664]
Underfull \vbox (badness 1472) has occurred while \output is active [665]
[666] [667] [668] [669] [670] [671] [672] [673] [674]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686]
[687] [688] [689] [690] [691] [692] [693] [694] [695]
Overfull \vbox (4.26088pt too high) has occurred while \output is active
[696] [697] [698] [699] [700] [701]
Overfull \vbox (13.87083pt too high) has occurred while \output is active
[702]
Underfull \vbox (badness 2376) has occurred while \output is active [703]
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718]
Overfull \vbox (10.49593pt too high) has occurred while \output is active
[719]
Overfull \vbox (15.49593pt too high) has occurred while \output is active
[720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731]
[732] [733] [734]) (./grDevices-pkg.tex
Chapter 4.
[735] [736] [737] [738]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to
Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in
Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[739] [740] [741] [742] [743] [744] [745] [746] [747]
Underfull \hbox (badness 1424) in paragraph at lines 898--900
[][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and 
\T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i
-fied as
[748] [749] [750] [751] [752]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[753] [754]
Underfull \hbox (badness 2512) in paragraph at lines 1311--1313
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[755]
Underfull \hbox (badness 1852) in paragraph at lines 1405--1408
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[756] [757] [758]
Underfull \hbox (badness 1490) in paragraph at lines 1611--1616
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[759] [760] [761] [762] [763] [764]
Underfull \hbox (badness 1325) in paragraph at lines 2017--2027
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[765]
Underfull \hbox (badness 10000) in paragraph at lines 2129--2131
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[766] [767] [768]
Underfull \hbox (badness 6758) in paragraph at lines 2308--2311
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[769] [770] [771] [772] [773] [774] [775] [776] [777]
Underfull \hbox (badness 10000) in paragraph at lines 2919--2920
Underfull \vbox (badness 10000) has occurred while \output is active [778]
[779] [780] [781] [782] [783] [784] [785]
Underfull \hbox (badness 10000) in paragraph at lines 3493--3498
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[786] [787] [788] [789] [790] [791] [792]
Underfull \vbox (badness 10000) has occurred while \output is active [793]
Underfull \hbox (badness 10000) in paragraph at lines 3992--3995
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[794] [795] [796] [797] [798] [799] [800] [801] [802] [803]
Underfull \hbox (badness 10000) in paragraph at lines 4732--4737
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]
Underfull \hbox (badness 10000) in paragraph at lines 4732--4737
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte
nt / dam / acom / en / devnet / acrobat / pdfs / pdf _
Underfull \hbox (badness 1881) in paragraph at lines 4732--4737
\T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc
-tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac .
[804]
Underfull \vbox (badness 10000) has occurred while \output is active [805]
[806]
Underfull \hbox (badness 1584) in paragraph at lines 4888--4890
[]\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/
n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
Underfull \hbox (badness 1067) in paragraph at lines 4892--4899
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[807] [808] [809] [810]
Underfull \hbox (badness 1377) in paragraph at lines 5198--5203
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[811]
Underfull \hbox (badness 1418) in paragraph at lines 5274--5281
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,
Underfull \hbox (badness 1755) in paragraph at lines 5292--5294
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[812]
Underfull \hbox (badness 1377) in paragraph at lines 5403--5408
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[813]
Underfull \hbox (badness 7344) in paragraph at lines 5472--5474
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[814] [815]
Underfull \hbox (badness 2035) in paragraph at lines 5610--5619
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
Underfull \hbox (badness 10000) in paragraph at lines 5610--5619
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,
Underfull \hbox (badness 10000) in paragraph at lines 5610--5619
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[816] [817]
Underfull \hbox (badness 10000) in paragraph at lines 5678--5680
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[818] [819]
Underfull \hbox (badness 1546) in paragraph at lines 5820--5828
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[820] [821] [822] [823] [824] [825] [826] [827]
Underfull \hbox (badness 10000) in paragraph at lines 6358--6361
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839]
Underfull \hbox (badness 1189) in paragraph at lines 7184--7186
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[840]
Underfull \hbox (badness 10000) in paragraph at lines 7289--7291
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[841] [842] [843] [844] [845]
Underfull \hbox (badness 3780) in paragraph at lines 7603--7609
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[846] [847]
Underfull \hbox (badness 2680) in paragraph at lines 7805--7807
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[848] [849] [850]) (./graphics-pkg.tex
Chapter 5.
[851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862]
[863] [864] [865]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [866]
[867] [868] [869] [870] [871]
Underfull \hbox (badness 4634) in paragraph at lines 1355--1358
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883]
[884] [885] [886]
Underfull \hbox (badness 1728) in paragraph at lines 2333--2335
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n
" \T1/ptm/m/n/10 to sup-press and see also
[887]
Underfull \hbox (badness 1009) in paragraph at lines 2426--2433
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899]
[900] [901] [902] [903] [904] [905] [906] [907] [908]
Underfull \vbox (badness 10000) has occurred while \output is active [909]
[910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920]
Underfull \hbox (badness 3229) in paragraph at lines 4602--4607
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[921] [922] [923] [924]
Underfull \hbox (badness 10000) in paragraph at lines 5032--5038
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.
Underfull \hbox (badness 5908) in paragraph at lines 5032--5038
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[925] [926]
Underfull \hbox (badness 10000) in paragraph at lines 5163--5166
[927 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5224--5226
[928 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//oma.pdf>]
[929]
Underfull \hbox (badness 10000) in paragraph at lines 5414--5416
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[930] [931] [932] [933] [934] [935] [936] [937]pdfTeX warning (ext4): destinati
on with the same identifier (name{Rfn.plot}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.5896 \aliasA{plot}{plot.default}{plot}
                                         [938] [939] [940] [941] [942] [943]
[944] [945] [946] [947] [948] [949] [950]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802
[][] 
[951 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//pch.pdf>]
[952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963]
Underfull \hbox (badness 2012) in paragraph at lines 7623--7626
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975]
[976] [977] [978] [979] [980] [981] [982]
Underfull \hbox (badness 10000) in paragraph at lines 8889--8891
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color
Underfull \hbox (badness 10000) in paragraph at lines 8891--8893
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[983]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8971 \HeaderA{units}{Graphical Units}{units}
                                               [984] [985] [986] [987])
(./grid-pkg.tex [988]
Chapter 6.
[989] [990] [991] [992] [993] [994] [995] [996]
Underfull \hbox (badness 2680) in paragraph at lines 486--489
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005]
Underfull \hbox (badness 4279) in paragraph at lines 1112--1121
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1006]
Underfull \vbox (badness 10000) has occurred while \output is active [1007]
[1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018]
[1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029]
[1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040]
[1041] [1042] [1043] [1044] [1045] [1046]
Underfull \vbox (badness 10000) has occurred while \output is active [1047]
[1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058]
[1059]
Underfull \hbox (badness 1067) in paragraph at lines 4537--4540
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1060] [1061] [1062] [1063]
Underfull \hbox (badness 7256) in paragraph at lines 4782--4784
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074]
[1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085]
[1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094]
Underfull \hbox (badness 1824) in paragraph at lines 6753--6756
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1095] [1096] [1097] [1098]) (./methods-pkg.tex
Chapter 7.
[1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106]
Underfull \vbox (badness 10000) has occurred while \output is active [1107]
Underfull \vbox (badness 10000) has occurred while \output is active [1108]
[1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class
Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1125] [1126] [1127]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1128] [1129] [1130] [1131] [1132]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1133] [1134]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1135] [1136] [1137] [1138] [1139] [1140] [1141]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1142] [1143] [1144] [1145] [1146]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1147] [1148]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166]
Underfull \vbox (badness 10000) has occurred while \output is active [1167]
Underfull \vbox (badness 10000) has occurred while \output is active [1168]
[1169] [1170]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1171]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1172] [1173] [1174]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1183] [1184] [1185] [1186]
Underfull \vbox (badness 10000) has occurred while \output is active [1187]
[1188] [1189]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1190] [1191] [1192]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1193]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1194] [1195]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206]
[1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217]
[1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1229] [1230] [1231] [1232] [1233] [1234] [1235]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1236] [1237] [1238]) (./parallel-pkg.tex
Chapter 8.
Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1239] [1240] [1241] [1242]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253]
[1254] [1255] [1256] [1257] [1258]
Underfull \hbox (badness 3386) in paragraph at lines 1401--1404
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1259] [1260] [1261]) (./splines-pkg.tex [1262]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273]
[1274] [1275] [1276]) (./stats-pkg.tex
Chapter 10.
[1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287]
[1288] [1289]
Underfull \hbox (badness 1412) in paragraph at lines 882--884
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1290] [1291] [1292] [1293] [1294] [1295] [1296]
Underfull \hbox (badness 2503) in paragraph at lines 1364--1367
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1297] [1298] [1299]
Underfull \hbox (badness 10000) in paragraph at lines 1544--1548
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310]
[1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
[1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 2503) in paragraph at lines 3514--3517
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338]
[1339] [1340] [1341]
Underfull \hbox (badness 1127) in paragraph at lines 4430--4433
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1342] [1343] [1344] [1345] [1346]
Underfull \hbox (badness 3989) in paragraph at lines 4770--4777
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 2556) in paragraph at lines 5406--5409
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For
Underfull \hbox (badness 2932) in paragraph at lines 5423--5425
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1356] [1357] [1358] [1359] [1360] [1361]
Underfull \hbox (badness 2503) in paragraph at lines 5820--5824
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372]
[1373] [1374]
Underfull \hbox (badness 7081) in paragraph at lines 6614--6617
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method
Underfull \hbox (badness 10000) in paragraph at lines 6618--6620
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385]
[1386]
Underfull \hbox (badness 10000) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397]
[1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407]
Underfull \vbox (badness 10000) has occurred while \output is active [1408]
[1409] [1410] [1411]
Underfull \hbox (badness 2626) in paragraph at lines 9144--9147
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1412] [1413]
Underfull \hbox (badness 2503) in paragraph at lines 9251--9255
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424]
[1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432]
Underfull \hbox (badness 4518) in paragraph at lines 10587--10592
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1433] [1434] [1435] [1436] [1437]
Underfull \hbox (badness 2142) in paragraph at lines 10948--10951
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
Underfull \hbox (badness 1253) in paragraph at lines 10967--10970
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1438]
Underfull \hbox (badness 1708) in paragraph at lines 11029--11033
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1439] [1440] [1441] [1442] [1443]
Underfull \hbox (badness 1694) in paragraph at lines 11425--11428
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11909 \aliasA{hat}{influence.measures}{hat}
                                              [1452] [1453]
Underfull \hbox (badness 1484) in paragraph at lines 12051--12053
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462]
Underfull \hbox (badness 10000) in paragraph at lines 12650--12652
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1463] [1464] [1465] [1466] [1467]
Underfull \hbox (badness 2894) in paragraph at lines 12986--12990
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478]
[1479]
Underfull \hbox (badness 4518) in paragraph at lines 13737--13742
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488]
Underfull \hbox (badness 4518) in paragraph at lines 14390--14395
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1489] [1490]
Underfull \hbox (badness 8151) in paragraph at lines 14528--14532
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =
Underfull \hbox (badness 1199) in paragraph at lines 14535--14537
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501]
[1502] [1503] [1504] [1505] [1506] [1507]
Underfull \hbox (badness 2503) in paragraph at lines 15611--15615
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515]
Underfull \hbox (badness 10000) in paragraph at lines 16124--16130
[]\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo
del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to
Underfull \hbox (badness 1867) in paragraph at lines 16124--16130
\T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response
(m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s
ums any terms
[1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526]
[1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537]
[1538] [1539]
Underfull \hbox (badness 1158) in paragraph at lines 17767--17770
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm
/m/n/10 as the data ar-gu-ment. The ac-
[1540] [1541]
Underfull \vbox (badness 10000) has occurred while \output is active [1542]
Underfull \vbox (badness 10000) has occurred while \output is active [1543]
[1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554]
Underfull \hbox (badness 1377) in paragraph at lines 18790--18795
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
[1555]
Underfull \hbox (badness 1735) in paragraph at lines 18795--18798
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 2343) in paragraph at lines 18808--18812
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 3471) in paragraph at lines 18808--18812
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to
Underfull \hbox (badness 2662) in paragraph at lines 18816--18820
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1556] [1557] [1558]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1559] [1560] [1561] [1562] [1563] [1564] [1565]
Underfull \hbox (badness 1337) in paragraph at lines 19503--19506
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 3049) in paragraph at lines 20001--20005
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1574] [1575] [1576] [1577]
Underfull \hbox (badness 1194) in paragraph at lines 20264--20267
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1578] [1579] [1580] [1581] [1582] [1583] [1584]
Underfull \hbox (badness 2503) in paragraph at lines 20643--20646
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3919) in paragraph at lines 20670--20672
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
[1596] [1597] [1598] [1599] [1600]
Underfull \hbox (badness 10000) in paragraph at lines 21748--21754
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611]
[1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621]
Underfull \hbox (badness 1337) in paragraph at lines 23105--23111
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1622] [1623] [1624] [1625] [1626] [1627] [1628]
Underfull \hbox (badness 3780) in paragraph at lines 23530--23533
[]\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th
e pre-ci-sion to use when for-mat-
Underfull \hbox (badness 1152) in paragraph at lines 23530--23533
\T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s
ions up to 4.0.x, this had been set to
[1629] [1630]
Underfull \hbox (badness 10000) in paragraph at lines 23671--23672
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1631] [1632] [1633] [1634]
Underfull \hbox (badness 10000) in paragraph at lines 23955--23958
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
Underfull \hbox (badness 4205) in paragraph at lines 23955--23958
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644]
Underfull \hbox (badness 1824) in paragraph at lines 24632--24638
[]\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first
 re-placed by al-ter-
Underfull \hbox (badness 1033) in paragraph at lines 24632--24638
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
Underfull \hbox (badness 10000) in paragraph at lines 24653--24656
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1645]
Underfull \hbox (badness 3690) in paragraph at lines 24722--24726
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653]
Underfull \hbox (badness 2165) in paragraph at lines 25234--25239
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1654] [1655] [1656] [1657]
Underfull \hbox (badness 1867) in paragraph at lines 25439--25441
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 25454--25458
[]\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback =
 use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667]
Underfull \vbox (badness 10000) has occurred while \output is active [1668]
[1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678]
Underfull \vbox (badness 10000) has occurred while \output is active [1679]
[1680]
Underfull \hbox (badness 3514) in paragraph at lines 27017--27022
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1681] [1682] [1683]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1684]
Underfull \hbox (badness 3514) in paragraph at lines 27287--27293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1685]
Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344
 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 
Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346
 []           \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1686] [1687] [1688]
Underfull \hbox (badness 3514) in paragraph at lines 27520--27525
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 27607--27612
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690]
Underfull \hbox (badness 3514) in paragraph at lines 27672--27677
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1691] [1692]
Underfull \hbox (badness 3514) in paragraph at lines 27766--27771
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1693]
Underfull \hbox (badness 6691) in paragraph at lines 27858--27863
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701]
Underfull \hbox (badness 4024) in paragraph at lines 28349--28352
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710]
Underfull \hbox (badness 5431) in paragraph at lines 28955--28957
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1711] [1712] [1713] [1714]
Underfull \hbox (badness 5431) in paragraph at lines 29165--29168
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1715] [1716] [1717] [1718] [1719]
Underfull \hbox (badness 1337) in paragraph at lines 29480--29484
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1720] [1721] [1722] [1723]
Underfull \hbox (badness 1616) in paragraph at lines 29792--29795
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734]
[1735] [1736] [1737] [1738] [1739] [1740] [1741]
Underfull \hbox (badness 3557) in paragraph at lines 30927--30931
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1742] [1743]
Underfull \vbox (badness 10000) has occurred while \output is active [1744]
[1745] [1746]
Underfull \hbox (badness 1337) in paragraph at lines 31291--31295
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754]
Underfull \hbox (badness 1337) in paragraph at lines 31820--31824
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
Underfull \hbox (badness 10000) in paragraph at lines 31834--31836
[]\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i
-tive nu-meric tol-er-ance, used in
[1755] [1756] [1757]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1758] [1759]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188
 []      \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1760] [1761] [1762] [1763] [1764]) (./stats4-pkg.tex
Chapter 11.
[1765] [1766] [1767]
Underfull \vbox (badness 10000) has occurred while \output is active [1768]
[1769] [1770] [1771] [1772]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1773] [1774] [1775])
(./tcltk-pkg.tex [1776]
Chapter 12.
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \vbox (badness 10000) has occurred while \output is active [1784]
Underfull \hbox (badness 1546) in paragraph at lines 666--673
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795]
[1796]) (./tools-pkg.tex
Chapter 13.
[1797]
LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.
[1798]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1799] [1800]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
Underfull \hbox (badness 10000) in paragraph at lines 288--301
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 288--301
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1801]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1802] [1803]
Underfull \hbox (badness 1142) in paragraph at lines 463--467
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1804] [1805] [1806] [1807] [1808]
Overfull \vbox (7.18602pt too high) has occurred while \output is active
[1809] [1810] [1811] [1812] [1813] [1814]
Underfull \hbox (badness 1014) in paragraph at lines 1174--1176
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
Underfull \hbox (badness 7238) in paragraph at lines 1180--1182
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
Underfull \hbox (badness 10000) in paragraph at lines 1217--1220
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1815] [1816] [1817] [1818] [1819]
Underfull \hbox (badness 2293) in paragraph at lines 1569--1571
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1820] [1821]
Underfull \hbox (badness 7981) in paragraph at lines 1707--1715
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1822]
Underfull \hbox (badness 1082) in paragraph at lines 1717--1719
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1823] [1824] [1825]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.GSC}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       pdfTeX warning (ext4): destination with 
the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1826] [1827] [1828]
[1829]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1830] [1831] [1832]
Underfull \hbox (badness 7981) in paragraph at lines 2391--2399
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1833] [1834] [1835] [1836] [1837] [1838] [1839]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2885.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2886.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2886.
[1840] [1841] [1842] [1843]
Underfull \hbox (badness 1424) in paragraph at lines 3177--3179
[]\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854]
Underfull \hbox (badness 10000) in paragraph at lines 3878--3880
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1855] [1856]
Underfull \hbox (badness 10000) in paragraph at lines 4017--4020
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1857]
Underfull \hbox (badness 1137) in paragraph at lines 4119--4121
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1858] [1859] [1860] [1861] [1862]
Underfull \hbox (badness 1796) in paragraph at lines 4427--4432
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type ==
[1863]
Underfull \hbox (badness 1838) in paragraph at lines 4501--4507
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The
Underfull \hbox (badness 10000) in paragraph at lines 4501--4507
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1864] [1865] [1866] [1867]
Underfull \hbox (badness 2197) in paragraph at lines 4776--4786
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/it/10 available.packages[][][]\T1/ptm/m/n/10 :
[1868]
Underfull \hbox (badness 1571) in paragraph at lines 4842--4846
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1869] [1870] [1871]) (./utils-pkg.tex [1872]
Chapter 14.
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ',
[1873] [1874] [1875] [1876] [1877]
Underfull \hbox (badness 10000) in paragraph at lines 378--383
\T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1878] [1879] [1880] [1881] [1882]
Underfull \hbox (badness 10000) in paragraph at lines 720--726
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3343) in paragraph at lines 720--726
\T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1883] [1884]
Underfull \hbox (badness 5847) in paragraph at lines 857--863
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-
Underfull \hbox (badness 4229) in paragraph at lines 857--863
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1885]
Underfull \hbox (badness 3861) in paragraph at lines 925--930
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1886] [1887] [1888]
Underfull \hbox (badness 3323) in paragraph at lines 1108--1116
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-
Underfull \hbox (badness 2961) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
Underfull \hbox (badness 3919) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
Underfull \hbox (badness 3735) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally.
Underfull \hbox (badness 1817) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1889] [1890] [1891] [1892] [1893] [1894] [1895]
Underfull \hbox (badness 1371) in paragraph at lines 1625--1627
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to
[1896]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 1695.
[1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905]
Underfull \hbox (badness 2057) in paragraph at lines 2346--2348
[]\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1906] [1907] [1908] [1909] [1910]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2697 ... the Clipboard in MS Windows}{clipboard}
                                                   [1911] [1912] [1913]
Underfull \hbox (badness 1748) in paragraph at lines 2864--2867
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1914] [1915] [1916] [1917] [1918] [1919]
Underfull \hbox (badness 5388) in paragraph at lines 3274--3278
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header =
Underfull \hbox (badness 2285) in paragraph at lines 3279--3282
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[]
[][](...,header = TRUE,sep =
[1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930]
Underfull \hbox (badness 1430) in paragraph at lines 4063--4071
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[1931]
Underfull \hbox (badness 1231) in paragraph at lines 4140--4152
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1932] [1933]
Underfull \hbox (badness 10000) in paragraph at lines 4297--4299
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943]pdfTeX war
ning (ext4): destination with the same identifier (name{Rfn.format}) has been a
lready used, duplicate ignored
<to be read again> 
                   \relax 
l.4995 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4995 ...mat Unordered and Ordered Lists}{format}
                                                   [1944] [1945] [1946]
[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1622) in paragraph at lines 5514--5518
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 6232.
[1962]
Underfull \hbox (badness 1371) in paragraph at lines 6236--6238
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to
[1963]
Underfull \hbox (badness 1502) in paragraph at lines 6325--6330
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6325--6330
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1964] [1965]
Underfull \hbox (badness 10000) in paragraph at lines 6498--6507
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1966]
Underfull \hbox (badness 2150) in paragraph at lines 6562--6565
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[1967] [1968]
Underfull \hbox (badness 3118) in paragraph at lines 6701--6703
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1969] [1970]
Underfull \hbox (badness 1325) in paragraph at lines 6880--6884
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
Underfull \hbox (badness 4726) in paragraph at lines 6892--6898
\T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[1971]
Underfull \hbox (badness 10000) in paragraph at lines 6964--6967
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be
Underfull \hbox (badness 10000) in paragraph at lines 6964--6967
\T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
Underfull \hbox (badness 1424) in paragraph at lines 6972--6975
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[1972]
Underfull \hbox (badness 3219) in paragraph at lines 7043--7050
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7043--7050
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
Underfull \hbox (badness 1342) in paragraph at lines 7043--7050
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
Underfull \hbox (badness 1596) in paragraph at lines 7043--7050
[][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently
Underfull \hbox (badness 2932) in paragraph at lines 7051--7054
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[1973] [1974]
Underfull \hbox (badness 1546) in paragraph at lines 7177--7180
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa
ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m
/n/10 will
Underfull \hbox (badness 10000) in paragraph at lines 7210--7215
[][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985]
[1986]
Underfull \hbox (badness 10000) in paragraph at lines 7997--7999
[]\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/
n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994]
Underfull \vbox (badness 10000) has occurred while \output is active [1995]
[1996] [1997] [1998]
Underfull \hbox (badness 10000) in paragraph at lines 8735--8737
[]\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from
Underfull \hbox (badness 2310) in paragraph at lines 8757--8762
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1999] [2000] [2001] [2002] [2003] [2004] [2005]
Underfull \hbox (badness 1248) in paragraph at lines 9283--9287
[]\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2006]
Underfull \hbox (badness 1789) in paragraph at lines 9363--9365
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014] [2015]
Underfull \vbox (badness 5533) has occurred while \output is active [2016]
[2017] [2018]
Underfull \hbox (badness 1097) in paragraph at lines 10200--10203
[]\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2019] [2020]
Underfull \hbox (badness 3000) in paragraph at lines 10336--10341
[][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028]
Underfull \hbox (badness 2134) in paragraph at lines 10925--10930
[][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write.
table[][][]\T1/ptm/m/n/10 ;
[2029]
Underfull \hbox (badness 10000) in paragraph at lines 10981--10986
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
Underfull \hbox (badness 10000) in paragraph at lines 10981--10986
\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2030] [2031] [2032] [2033] [2034] [2035] [2036]
Underfull \hbox (badness 2469) in paragraph at lines 11475--11479
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
Underfull \hbox (badness 3428) in paragraph at lines 11475--11479
[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2037] [2038] [2039] [2040] [2041] [2042]
Underfull \hbox (badness 4060) in paragraph at lines 11891--11894
[]\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able
[2043]
Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2044] [2045] [2046]
Underfull \hbox (badness 2150) in paragraph at lines 12162--12164
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
[2047] [2048] [2049] [2050]
Underfull \hbox (badness 10000) in paragraph at lines 12381--12385
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 12412--12418
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2051] [2052]
Underfull \hbox (badness 1009) in paragraph at lines 12606--12618
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2053]
Underfull \hbox (badness 4779) in paragraph at lines 12646--12648
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
Underfull \hbox (badness 1077) in paragraph at lines 12676--12683
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2054] [2055] [2056] [2057] [2058] [2059]
Underfull \hbox (badness 3780) in paragraph at lines 13084--13088
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via
Underfull \hbox (badness 2635) in paragraph at lines 13100--13103
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2060] [2061] [2062]
Underfull \hbox (badness 2302) in paragraph at lines 13305--13307
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2063] [2064] [2065] [2066] [2067]
Underfull \hbox (badness 10000) in paragraph at lines 13603--13608
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/it/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have
Underfull \hbox (badness 5970) in paragraph at lines 13612--13615
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 2932) in paragraph at lines 14050--14057
[]\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,
Underfull \hbox (badness 1688) in paragraph at lines 14050--14057
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2074] [2075] [2076] [2077]
Underfull \hbox (badness 6510) in paragraph at lines 14358--14362
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble
Underfull \hbox (badness 10000) in paragraph at lines 14365--14368
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /
Underfull \hbox (badness 2245) in paragraph at lines 14365--14368
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087]
Underfull \hbox (badness 10000) in paragraph at lines 15032--15037
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to
Underfull \hbox (badness 3861) in paragraph at lines 15032--15037
[][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n
/10 and
Underfull \hbox (badness 1052) in paragraph at lines 15038--15040
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2088]
Underfull \hbox (badness 10000) in paragraph at lines 15097--15100
[][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099]
[2100]
Underfull \hbox (badness 10000) in paragraph at lines 15875--15877
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/it/10 file =
[2101] [2102] [2103]) [2104] [2105] [2106] (./KernSmooth-pkg.tex
Chapter 15.
[2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116])
(./MASS-pkg.tex
Chapter 16.
[2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127]
[2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138]
[2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149]
[2150] [2151] [2152] [2153]
Underfull \hbox (badness 7944) in paragraph at lines 2703--2706
[]\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an
d graph-i-cal pa-ram-e-ters. Note that
[2154] [2155] [2156]
Underfull \hbox (badness 10000) in paragraph at lines 2873--2878
\T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm
/m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic
"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative
[2157] [2158]
Underfull \hbox (badness 4686) in paragraph at lines 3041--3043
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169]
[2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180]
[2181] [2182] [2183]
Underfull \hbox (badness 1117) in paragraph at lines 4802--4805
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2184]
Underfull \hbox (badness 1117) in paragraph at lines 4880--4883
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195]
[2196] [2197] [2198] [2199] [2200] [2201]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6146 ...sical N, P, K Factorial Experiment}{npk}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.6146 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2202] [2203] [2204]
[2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214]
Underfull \hbox (badness 1117) in paragraph at lines 7117--7124
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2215]
Underfull \hbox (badness 3138) in paragraph at lines 7188--7194
[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2216] [2217] [2218]
Underfull \hbox (badness 6775) in paragraph at lines 7367--7370
\T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n
ant com-po-nents are used (ex-cept for
[2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227]
Underfull \hbox (badness 4686) in paragraph at lines 8000--8002
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238]
[2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249]
[2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260]
[2261] [2262] [2263] [2264]) (./Matrix-pkg.tex
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 41--44
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
Underfull \hbox (badness 10000) in paragraph at lines 41--44
\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2265]
Underfull \hbox (badness 1769) in paragraph at lines 95--98
[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2266] [2267] [2268] [2269]
Underfull \hbox (badness 5119) in paragraph at lines 509--513
[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
[2270] [2271]
Underfull \hbox (badness 2035) in paragraph at lines 605--608
[]\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-her-its
 from class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1
/zi4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a
[2272] [2273]
Underfull \hbox (badness 1701) in paragraph at lines 758--762
[]\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t
ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org /
[2274] [2275]
Underfull \hbox (badness 5175) in paragraph at lines 877--882
[]\T1/ptm/m/n/10 option [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-
cat-ing if the re-sult should be sparse, i.e., for-
Underfull \hbox (badness 10000) in paragraph at lines 877--882
\T1/ptm/m/n/10 mally in-her-it-ing from \T1/zi4/m/it/10 "[][]sparseMatrix[][][]
"\T1/ptm/m/n/10 . The de-fault, [][]\T1/zi4/m/it/10 NA[][][]\T1/ptm/m/n/10 , de
-
Underfull \hbox (badness 6675) in paragraph at lines 877--882
\T1/ptm/m/n/10 cides from the ``spar-sity'' of \T1/zi4/m/it/10 x \T1/ptm/m/n/10
 and \T1/zi4/m/it/10 y\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m
/n/10 code in
[2276] [2277]
Underfull \hbox (badness 10000) in paragraph at lines 1056--1058
[]\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n
/10 (or equiv-a-lently, \T1/zi4/m/it/10 to =
[2278] [2279]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.chol}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1168 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic
ate ignored
<to be read again> 
                   \relax 
l.1168 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  
Underfull \hbox (badness 1117) in paragraph at lines 1223--1229
\T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc
h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t
he same al-go-rithm
[2280] [2281] [2282]
Underfull \hbox (badness 2277) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
[2283] [2284]
Underfull \hbox (badness 1097) in paragraph at lines 1595--1598
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and
 \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 "
dgeMatrix"\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 1783) in paragraph at lines 1601--1605
[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
[2285]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1658 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.1658 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.1659 \aliasA{colMeans}{colSums}{colMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.1680 \aliasA{rowMeans}{colSums}{rowMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1691 \aliasA{rowSums}{colSums}{rowSums}
                                          [2286] [2287] [2288]
Underfull \hbox (badness 3547) in paragraph at lines 1910--1913
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2289] [2290] [2291] [2292] [2293]
Underfull \hbox (badness 1360) in paragraph at lines 2333--2337
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n
ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via
[2294] [2295] [2296] [2297]
Underfull \hbox (badness 2717) in paragraph at lines 2649--2653
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
[2298] [2299]
Underfull \hbox (badness 6842) in paragraph at lines 2739--2742
[]\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T
1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[]
[][] \T1/ptm/m/n/10 (with ``su-per-class''
[2300]
Underfull \hbox (badness 10000) in paragraph at lines 3026--3030
[]\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro
up meth-ods re-turn a
[2301] [2302] [2303]
Underfull \hbox (badness 1173) in paragraph at lines 3236--3238
[]\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t
his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and
Underfull \hbox (badness 10000) in paragraph at lines 3283--3285
[][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre
fer-able to (and more ef-fi-cient than)
[2304] [2305]
Underfull \hbox (badness 1354) in paragraph at lines 3482--3485
[]\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex
-plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in
-her-it-ing from
[2306] [2307] [2308] [2309] [2310]
Underfull \hbox (badness 6188) in paragraph at lines 3892--3895
[]\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 ,
 or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type =
Underfull \hbox (badness 5147) in paragraph at lines 3895--3898
[]\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 ,
 or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type =
[2311] [2312]
Underfull \hbox (badness 2318) in paragraph at lines 4010--4014
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C
lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi
4/m/it/10 "dMatrix"\T1/ptm/m/n/10 ,
[2313] [2314]
Underfull \hbox (badness 5245) in paragraph at lines 4146--4150
[]\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1
0 : the [][]\T1/zi4/m/it/10 determinant[][][](x)
[2315] [2316] [2317] [2318] [2319] [2320]
Overfull \hbox (23.27168pt too wide) in paragraph at lines 4563--4563
 []\T1/zi4/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe
ll-Boeing/counterx/counterx.html[] 
Overfull \hbox (8.27782pt too wide) in paragraph at lines 4570--4570
 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB
/Boeing/msc00726.tar.gz"))))[] 
[2321] [2322]
Underfull \hbox (badness 1931) in paragraph at lines 4802--4804
[]\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/
ptm/m/n/10 codes should be aligned, see
[2323] [2324] [2325] [2326] [2327]
Underfull \hbox (badness 1005) in paragraph at lines 5108--5113
[]\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA 
\T1/ptm/m/n/10 means no bor-der is drawn.
Underfull \hbox (badness 1655) in paragraph at lines 5108--5113
\T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4
/m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is
Underfull \hbox (badness 5862) in paragraph at lines 5127--5130
[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use
[2328]
Overfull \hbox (42.75635pt too wide) in paragraph at lines 5175--5175
 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
[2329]
Underfull \hbox (badness 3229) in paragraph at lines 5276--5285
[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within
 the
[2330]
Underfull \hbox (badness 10000) in paragraph at lines 5318--5320
[]\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot
her sig-na-tures (use
Underfull \hbox (badness 4995) in paragraph at lines 5323--5326
[]\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : 
a user con-ve-nience, to al-low
Underfull \hbox (badness 10000) in paragraph at lines 5333--5336
[]\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c
o-er-cion to a tra-di-tional
[2331] [2332] [2333] [2334] [2335]
Underfull \hbox (badness 1014) in paragraph at lines 5712--5715
[]\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10
 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10
 is a tri-an-gu-lar ma-trix. Anal-o-gously,
[2336] [2337] [2338] [2339]
Underfull \hbox (badness 10000) in paragraph at lines 6027--6030
[]\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2340]
Underfull \hbox (badness 2478) in paragraph at lines 6139--6144
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde
nseMatrix"\T1/ptm/m/n/10 . Class
[2341]
Underfull \hbox (badness 10000) in paragraph at lines 6147--6150
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2342]
Underfull \hbox (badness 10000) in paragraph at lines 6339--6342
[]\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2343]
Underfull \hbox (badness 10000) in paragraph at lines 6437--6440
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2344]
Underfull \hbox (badness 10000) in paragraph at lines 6512--6515
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2345]
Underfull \hbox (badness 2050) in paragraph at lines 6588--6591
[]\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth
-ods for dif-fer-ent types of ma-tri-ces. Use
[2346] [2347] [2348] [2349] [2350]
Underfull \hbox (badness 6268) in paragraph at lines 6901--6905
[]\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1
/ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1
0 . How-ever,
[2351]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7000 \aliasA{det}{Matrix-class}{det}
                                      
Underfull \hbox (badness 1527) in paragraph at lines 7093--7095
[]\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \
T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode
[2352]
Underfull \hbox (badness 4846) in paragraph at lines 7098--7101
[]\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1
/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing
Underfull \hbox (badness 10000) in paragraph at lines 7103--7106
[2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
cent.*.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7176 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.crossprod}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.7284 ...A{crossprod}{matrix-products}{crossprod}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.7383 ...tcrossprod}{matrix-products}{tcrossprod}
                                                   [2354]
Underfull \hbox (badness 10000) in paragraph at lines 7556--7561
[]\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot
her sig-na-tures (use
Underfull \hbox (badness 1448) in paragraph at lines 7556--7561
\T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m
ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of
Underfull \hbox (badness 10000) in paragraph at lines 7565--7567
[]\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r
e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an
Underfull \hbox (badness 10000) in paragraph at lines 7567--7569
[]\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r
e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an
Underfull \hbox (badness 1264) in paragraph at lines 7571--7572
[]\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot
her sig-na-tures, see
[2355] [2356]
Underfull \hbox (badness 1430) in paragraph at lines 7715--7720
[]\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio
n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1
/zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][]
\T1/ptm/m/n/10 , and
[2357]
Underfull \hbox (badness 10000) in paragraph at lines 7786--7789
[]\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2358]
Underfull \hbox (badness 10000) in paragraph at lines 7842--7844
[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/
ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X
[2359] [2360]
Underfull \vbox (badness 10000) has occurred while \output is active [2361]
Underfull \hbox (badness 2478) in paragraph at lines 8049--8054
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde
nseMatrix"\T1/ptm/m/n/10 . Class
Underfull \hbox (badness 10000) in paragraph at lines 8057--8060
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2362] [2363]
Underfull \hbox (badness 5924) in paragraph at lines 8251--8253
[]\T1/ptm/m/n/10 fast sim-ple meth-ods
[2364]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor
m}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8291 \HeaderA{norm}{Matrix Norms}{norm}
                                         pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.8291 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2365] [2366]
Underfull \hbox (badness 10000) in paragraph at lines 8564--8567
[]\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2367]
Underfull \hbox (badness 10000) in paragraph at lines 8654--8657
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2368]
Underfull \hbox (badness 10000) in paragraph at lines 8730--8733
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2369]
Underfull \vbox (badness 10000) has occurred while \output is active [2370]
Underfull \hbox (badness 10000) in paragraph at lines 8856--8858
[]\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe
r sig-na-tures (use
Underfull \hbox (badness 10000) in paragraph at lines 8861--8864
[]\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a 
user con-ve-nience, to al-low
[2371] [2372] [2373] [2374]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.qr}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9093 \aliasA{qr}{qr-methods}{qr}
                                   [2375] [2376] [2377] [2378]pdfTeX warning (e
xt4): destination with the same identifier (name{Rfn.rcond}) has been already u
sed, duplicate ignored
<to be read again> 
                   \relax 
l.9419 ... the Reciprocal Condition Number}{rcond}
                                                   [2379] [2380] [2381]
[2382] [2383]
Underfull \hbox (badness 2351) in paragraph at lines 9723--9731
[]\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment,
 via one di-men-sional
Underfull \hbox (badness 1852) in paragraph at lines 9723--9731
\T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][](
nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 
is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 ---
Underfull \hbox (badness 2343) in paragraph at lines 9723--9731
\T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls []
[]\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z
i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 ,
[2384] [2385] [2386] [2387]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.solve}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9998 \aliasA{solve}{solve-methods}{solve}
                                            [2388]
Underfull \hbox (badness 10000) in paragraph at lines 10161--10168
[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse =
[2389]
Underfull \hbox (badness 4403) in paragraph at lines 10222--10225
[]\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing 
\T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and
Underfull \hbox (badness 10000) in paragraph at lines 10292--10295
[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
[2390]
Underfull \hbox (badness 10000) in paragraph at lines 10328--10331
[]\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co
-er-ca-ble to)
Underfull \hbox (badness 10000) in paragraph at lines 10339--10343
[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
[2391] [2392] [2393] [2394] [2395] [2396] [2397] [2398]
Underfull \hbox (badness 10000) in paragraph at lines 10916--10924
[]\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn
s an ob-ject of S3 class
Underfull \hbox (badness 1796) in paragraph at lines 10916--10924
\T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z
i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x)
 \T1/ptm/m/n/10 (or just
Underfull \hbox (badness 10000) in paragraph at lines 10941--10949
[]\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 
: Co-er-cion of a fac-tor to
Underfull \hbox (badness 1112) in paragraph at lines 10941--10949
\T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca
-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class
[2399]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr.
Q}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11007 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
                                            [2400] [2401]
Underfull \hbox (badness 5036) in paragraph at lines 11193--11195
[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
[2402] [2403]
Underfull \hbox (badness 10000) in paragraph at lines 11400--11403
[]\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/
m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list
[2404]
Underfull \vbox (badness 10000) has occurred while \output is active [2405]
[2406] [2407]
Underfull \hbox (badness 10000) in paragraph at lines 11669--11674
[]\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/
it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be
[2408]
Underfull \hbox (badness 2057) in paragraph at lines 11749--11751
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2409] [2410]
Underfull \hbox (badness 10000) in paragraph at lines 11918--11923
[]\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z
i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[]
[][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for
Underfull \hbox (badness 1831) in paragraph at lines 11924--11930
[]\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1
/zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar
e de-fined
[2411]
Underfull \hbox (badness 1902) in paragraph at lines 11959--11963
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m
/it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] 
\T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a
nd other
[2412] [2413] [2414] [2415] [2416] [2417] [2418]
Underfull \hbox (badness 6910) in paragraph at lines 12558--12560
[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2419]
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12605.
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12605.
[2420] [2421]) (./boot-pkg.tex [2422]
Chapter 18.
[2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432]
Underfull \hbox (badness 1297) in paragraph at lines 799--809
[]\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce
sses, the de-fault be-haviour
[2433]
Underfull \hbox (badness 1881) in paragraph at lines 826--828
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2434]
Underfull \vbox (badness 10000) has occurred while \output is active [2435]
[2436]
Underfull \hbox (badness 10000) in paragraph at lines 1068--1072
[]\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i
n-ter-
Underfull \hbox (badness 10000) in paragraph at lines 1068--1072
\T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues
Underfull \hbox (badness 1859) in paragraph at lines 1068--1072
\T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply
 \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will
[2437]
Underfull \hbox (badness 2150) in paragraph at lines 1105--1111
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2438] [2439] [2440] [2441]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2442] [2443] [2444] [2445] [2446] [2447]
Underfull \hbox (badness 1005) in paragraph at lines 1800--1807
[]\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 "
ordinary" \T1/ptm/m/n/10 (case re-sam-pling),
[2448] [2449]
Underfull \vbox (badness 10000) has occurred while \output is active [2450]
Underfull \hbox (badness 7379) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2451] [2452] [2453] [2454]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2455]
Underfull \hbox (badness 1881) in paragraph at lines 2432--2434
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2456] [2457]
Underfull \hbox (badness 2970) in paragraph at lines 2536--2540
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i
t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t
he sam-ple
Underfull \hbox (badness 2310) in paragraph at lines 2536--2540
\T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it
/10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n
/10 is used. This is mul-ti-plied by
[2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468]
[2469] [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479]
[2480]
Underfull \hbox (badness 10000) in paragraph at lines 4190--4192
[]\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault 
is
[2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2492] [2493] [2494] [2495]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2496] [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] [2506]
Underfull \hbox (badness 4954) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa
ddle.distn"\T1/ptm/m/n/10 . See the help file for
[2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525])
(./class-pkg.tex [2526]
Chapter 19.
[2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536] [2537]
[2538] [2539] [2540] [2541] [2542]) (./cluster-pkg.tex
Chapter 20.
[2543] [2544] [2545] [2546] [2547]
Underfull \vbox (badness 7777) has occurred while \output is active [2548]
[2549] [2550] [2551] [2552]
Underfull \hbox (badness 4144) in paragraph at lines 691--694
[]\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem
-ory (and hence time), but dis-ables
[2553] [2554]
Underfull \hbox (badness 1412) in paragraph at lines 783--788
[]\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/
ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K
amil Ko-zlowski
[2555]
Underfull \hbox (badness 10000) in paragraph at lines 881--883
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2556] [2557]
Underfull \hbox (badness 10000) in paragraph at lines 992--994
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
Underfull \hbox (badness 1342) in paragraph at lines 1006--1010
[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2558] [2559] [2560]
Underfull \hbox (badness 6110) in paragraph at lines 1207--1211
[]\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/
m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne
nt, e.g., for
[2561] [2562] [2563]
Underfull \hbox (badness 10000) in paragraph at lines 1476--1479
[2564] [2565]
Underfull \hbox (badness 2503) in paragraph at lines 1588--1591
[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or
 \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of
[2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573]
Underfull \hbox (badness 10000) in paragraph at lines 2182--2185
Underfull \hbox (badness 10000) in paragraph at lines 2196--2202
[][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the 
[][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell
ipsoid \T1/ptm/m/n/10 ob-jects.
[2574] [2575] [2576] [2577]
Underfull \hbox (badness 6675) in paragraph at lines 2431--2433
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
[2578] [2579] [2580] [2581] [2582] [2583] [2584]
Underfull \hbox (badness 2980) in paragraph at lines 2961--2965
[][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc
es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl
ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 ,
[2585] [2586] [2587] [2588] [2589] [2590]
Underfull \hbox (badness 1142) in paragraph at lines 3302--3305
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2591] [2592]
Underfull \hbox (badness 1142) in paragraph at lines 3421--3424
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2593] [2594] [2595]
Underfull \hbox (badness 2582) in paragraph at lines 3644--3649
[][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi
4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p
tm/m/n/10 ,
[2596]
Underfull \hbox (badness 3209) in paragraph at lines 3706--3711
[]\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi
4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which
Underfull \hbox (badness 8019) in paragraph at lines 3706--3711
\T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/
m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx
[2597] [2598] [2599] [2600] [2601]
Underfull \hbox (badness 10000) in paragraph at lines 3998--4000
[]\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T
1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for
[2602] [2603] [2604] [2605]
Underfull \hbox (badness 2626) in paragraph at lines 4227--4232
[]\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/
n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col =
[2606]
Underfull \hbox (badness 1383) in paragraph at lines 4305--4310
[]\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m
/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T
1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial)
[2607] [2608] [2609] [2610] [2611] [2612] [2613]
Underfull \hbox (badness 10000) in paragraph at lines 4748--4750
[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side
[2614] [2615]) (./codetools-pkg.tex [2616]
Chapter 21.
[2617] [2618] [2619] [2620] [2621]) (./foreign-pkg.tex [2622]
Chapter 22.
[2623]
Underfull \hbox (badness 10000) in paragraph at lines 78--80
[]\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : /
 / waikato . github . io / weka-[]wiki / formats _ and _
[2624] [2625] [2626] [2627] [2628] [2629] [2630]
Underfull \hbox (badness 10000) in paragraph at lines 505--514
[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-
Underfull \hbox (badness 10000) in paragraph at lines 505--514
\T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de
-fault), the first orig-i-nal value
Underfull \hbox (badness 10000) in paragraph at lines 505--514
\T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named 
to
Underfull \hbox (badness 7133) in paragraph at lines 550--558
[]\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / 
en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][]
[2631]
Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624
 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2632] [2633] [2634]
Underfull \hbox (badness 10000) in paragraph at lines 812--813
[2635] [2636] [2637]
Underfull \hbox (badness 10000) in paragraph at lines 990--992
[]\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : /
 / waikato . github . io / weka-[]wiki / formats _ and _
[2638] [2639] [2640] [2641]
Underfull \hbox (badness 10000) in paragraph at lines 1270--1276
[]\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign
:::writeForeignStata\T1/ptm/m/n/10 ,
[2642] [2643]) (./lattice-pkg.tex [2644]
Chapter 23.
[2645]
Underfull \hbox (badness 1484) in paragraph at lines 117--121
[]\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li
n-ing the use of Trel-lis graph-ics;
Underfull \hbox (badness 10000) in paragraph at lines 117--121
\T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / 
departments / sia / project / trellis /
[2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656]
[2657] [2658] [2659] [2660]
Underfull \hbox (badness 1062) in paragraph at lines 1398--1402
\T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta
-tion for
[2661]
Underfull \vbox (badness 4416) has occurred while \output is active [2662]
Underfull \hbox (badness 1803) in paragraph at lines 1566--1583
[][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack-
age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 1566--1583
[][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p
anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/it/10 strip.default[][][]\T1/ptm/m/n/10 ,
[2663] [2664] [2665]
Underfull \hbox (badness 3009) in paragraph at lines 1725--1727
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][
][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1755--1759
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2666] [2667] [2668] [2669] [2670]
Underfull \hbox (badness 10000) in paragraph at lines 2141--2144
[]\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, 
the value of
[2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680]
Underfull \hbox (badness 2781) in paragraph at lines 2849--2851
[]\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col.
regions \T1/ptm/m/n/10 ar-gu-ment in
[2681] [2682]
Underfull \hbox (badness 2486) in paragraph at lines 3001--3005
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2683] [2684] [2685] [2686] [2687] [2688]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.parallel}) has been already used, duplicate ign
ored
<to be read again> 
                   \relax 
l.3475 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2689] [2690] [2691] [2692]
[2693] [2694] [2695] [2696]
Underfull \hbox (badness 5696) in paragraph at lines 3970--3974
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings
Underfull \hbox (badness 10000) in paragraph at lines 3970--3974
\T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme =
 "col.whitebg")\T1/ptm/m/n/10 .
Underfull \hbox (badness 2435) in paragraph at lines 3970--3974
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2697]
Underfull \hbox (badness 1173) in paragraph at lines 4109--4113
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
[2698]
Underfull \hbox (badness 3219) in paragraph at lines 4136--4138
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
[2699] [2700]
Underfull \hbox (badness 3492) in paragraph at lines 4336--4346
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 
is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 ,
[2701]
Underfull \hbox (badness 10000) in paragraph at lines 4361--4364
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo
t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4364--4366
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p
lot.polygon \T1/ptm/m/n/10 and
[2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710]
Underfull \hbox (badness 6157) in paragraph at lines 5087--5090
[]\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles
 via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and
[2711] [2712] [2713] [2714] [2715] [2716] [2717]
Underfull \hbox (badness 10000) in paragraph at lines 5545--5548
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 5592) in paragraph at lines 5545--5548
\T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le
ft of pan-els us-ing
[2718] [2719] [2720] [2721] [2722]
Underfull \hbox (badness 4805) in paragraph at lines 5907--5911
[]\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should 
be high-
Underfull \hbox (badness 10000) in paragraph at lines 5918--5925
[]\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t
ra pa-ram-e-ters are passed on to
Underfull \hbox (badness 1226) in paragraph at lines 5918--5925
\T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi
fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as
Underfull \hbox (badness 2418) in paragraph at lines 5918--5925
\T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z
i4/m/it/10 trellis.focus
Underfull \hbox (badness 10000) in paragraph at lines 5918--5925
\T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar
e used (in com-bi-na-tion with
Underfull \hbox (badness 1259) in paragraph at lines 5918--5925
[][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th
e cho-sen view-port if so re-quested.
[2723] [2724] [2725] [2726]
Underfull \hbox (badness 4242) in paragraph at lines 6218--6223
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
Underfull \hbox (badness 2529) in paragraph at lines 6218--6223
\T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there
 is no group-ing vari-able, oth-er-wise
[2727] [2728]
Underfull \hbox (badness 2310) in paragraph at lines 6334--6339
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/
10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round
 if
[2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739]
Underfull \hbox (badness 3168) in paragraph at lines 7116--7120
\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U
se
[2740] [2741] [2742] [2743]
Underfull \hbox (badness 2012) in paragraph at lines 7387--7390
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2744] [2745]
Underfull \hbox (badness 3333) in paragraph at lines 7559--7561
[]\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol
 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing
[2746] [2747] [2748]
Underfull \vbox (badness 10000) has occurred while \output is active [2749]
[2750] [2751]
Underfull \hbox (badness 1436) in paragraph at lines 7973--7979
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
[2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759]
Underfull \hbox (badness 10000) in paragraph at lines 8531--8534
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp
ose \T1/ptm/m/n/10 from
[2760]
Underfull \hbox (badness 1092) in paragraph at lines 8577--8579
[]\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 <Deepayan.Sarkar@R-project.org
> \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally
 con-
[2761] [2762]
Underfull \hbox (badness 3895) in paragraph at lines 8738--8741
[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T
1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2763]
Underfull \hbox (badness 1515) in paragraph at lines 8814--8818
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2764] [2765]
Underfull \hbox (badness 6316) in paragraph at lines 8920--8925
[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
Underfull \hbox (badness 5908) in paragraph at lines 8937--8940
[]\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c
omponents.default \T1/ptm/m/n/10 and
[2766] [2767] [2768] [2769]
Overfull \hbox (5.28876pt too wide) in paragraph at lines 9228--9232
[]\T1/ptm/m/n/10 Returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4
/m/it/10 left,right,left.name,right.name,condition
[2770] [2771] [2772] [2773] [2774] [2775] [2776]
Underfull \hbox (badness 2310) in paragraph at lines 9692--9696
[]\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 ,
 \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m
/n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p
tm/m/n/10 ,
Underfull \hbox (badness 3701) in paragraph at lines 9697--9700
[]\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m
/n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa
rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 ,
[2777] [2778] [2779]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.melanoma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9923 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                [2780] [2781] [2782]
Underfull \hbox (badness 4144) in paragraph at lines 10147--10150
[]\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R
u-ral and Ur-ban Mor-tal-
Underfull \hbox (badness 1509) in paragraph at lines 10147--10150
\T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it
/10 https : / / ruralhealth . und . edu / projects /
[2783] [2784]) (./mgcv-pkg.tex
Chapter 24.
[2785] [2786] [2787]
Underfull \hbox (badness 1142) in paragraph at lines 184--188
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 209--214
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2788] [2789] [2790] [2791]
Underfull \hbox (badness 10000) in paragraph at lines 378--385
[][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m
gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/
n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 smooth.terms[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 7168) in paragraph at lines 378--385
[][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m
/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][]
[]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z
i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][]
\T1/ptm/m/n/10 ,
[2792] [2793] [2794] [2795] [2796]
Underfull \hbox (badness 1406) in paragraph at lines 703--704
[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2797] [2798] [2799]
Underfull \hbox (badness 1158) in paragraph at lines 813--815
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
Underfull \hbox (badness 1259) in paragraph at lines 876--877
[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
[2800] [2801] [2802] [2803] [2804]
Underfull \hbox (badness 1281) in paragraph at lines 1160--1161
[]\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n
/10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt
m/m/n/10 resid-u-als can be ex-tracted. See Klein amd
[2805] [2806]
Underfull \vbox (badness 10000) has occurred while \output is active [2807]
Underfull \vbox (badness 10000) has occurred while \output is active [2808]
[2809]
Underfull \vbox (badness 10000) has occurred while \output is active [2810]
[2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821]
[2822] [2823] [2824] [2825]
Underfull \hbox (badness 1142) in paragraph at lines 2361--2365
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 2387--2392
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2826] [2827] [2828] [2829] [2830] [2831]
Underfull \vbox (badness 10000) has occurred while \output is active [2832]
Underfull \vbox (badness 10000) has occurred while \output is active [2833]
[2834] [2835] [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844]
[2845] [2846] [2847] [2848] [2849]
Underfull \hbox (badness 10000) in paragraph at lines 3822--3826
[]\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/
n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see
[2850] [2851]
Underfull \vbox (badness 10000) has occurred while \output is active [2852]
[2853] [2854]
Underfull \hbox (badness 1184) in paragraph at lines 4108--4112
[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
[2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] [2863] [2864] [2865]
[2866]
Underfull \hbox (badness 1142) in paragraph at lines 4829--4833
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2867]
Underfull \hbox (badness 1231) in paragraph at lines 4933--4935
[]\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since
 it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with
[2868] [2869] [2870]
Underfull \vbox (badness 10000) has occurred while \output is active [2871]
[2872] [2873] [2874]
Underfull \hbox (badness 2181) in paragraph at lines 5377--5378
[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2875] [2876] [2877] [2878] [2879] [2880] [2881]
Underfull \hbox (badness 10000) in paragraph at lines 5766--5767
[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(...
,fit=FALSE) \T1/ptm/m/n/10 or
[2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892]
Underfull \hbox (badness 1142) in paragraph at lines 6351--6355
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2893] [2894] [2895]
Underfull \vbox (badness 10000) has occurred while \output is active [2896]
[2897] [2898] [2899]
Underfull \hbox (badness 1087) in paragraph at lines 6723--6724
[]\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet
a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas
e, and if
[2900] [2901]
Underfull \vbox (badness 10000) has occurred while \output is active [2902]
Underfull \vbox (badness 10000) has occurred while \output is active [2903]
[2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914]
[2915]
Underfull \hbox (badness 1242) in paragraph at lines 7672--7673
[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926]
Underfull \hbox (badness 6001) in paragraph at lines 8312--8314
[]\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 <simon.wood@r-project.org> \T1/p
tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's
[2927] [2928] [2929] [2930] [2931] [2932] [2933] [2934] [2935] [2936]
Underfull \vbox (badness 10000) has occurred while \output is active [2937]
[2938]
Underfull \hbox (badness 1038) in paragraph at lines 9061--9064
[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim.
pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9061--9064
\T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId
not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 ,
[2939]
Underfull \hbox (badness 10000) in paragraph at lines 9117--9120
[]\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z
i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 ,
[2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950]
Underfull \hbox (badness 1852) in paragraph at lines 9790--9793
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and
[2951] [2952] [2953]
Underfull \hbox (badness 1852) in paragraph at lines 9959--9962
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and
[2954] [2955]
Underfull \vbox (badness 10000) has occurred while \output is active [2956]
[2957]
Underfull \hbox (badness 1205) in paragraph at lines 10191--10193
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10191--10193
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 10197--10202
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2958]
Underfull \hbox (badness 1205) in paragraph at lines 10281--10283
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10281--10283
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[2959] [2960] [2961]
Underfull \hbox (badness 1253) in paragraph at lines 10480--10482
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[2962] [2963] [2964] [2965] [2966] [2967]
Underfull \hbox (badness 4792) in paragraph at lines 10741--10744
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/
10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m
/n/10 can be used:
Underfull \hbox (badness 10000) in paragraph at lines 10741--10744
\T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo
th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[2968]
Underfull \hbox (badness 10000) in paragraph at lines 10848--10851
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1
0 "deviance"\T1/ptm/m/n/10 ,
[2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] [2978] [2979]
[2980] [2981]
Underfull \vbox (badness 10000) has occurred while \output is active [2982]
Underfull \hbox (badness 3861) in paragraph at lines 11637--11640
[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
[2983] [2984]
Underfull \hbox (badness 1320) in paragraph at lines 11752--11757
\T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T
1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If
 ma-
[2985]
Underfull \hbox (badness 1975) in paragraph at lines 11858--11863
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2986] [2987]
Underfull \hbox (badness 1762) in paragraph at lines 11947--11959
\T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T
1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr
es-sion splines with
[2988] [2989] [2990]
Underfull \hbox (badness 7667) in paragraph at lines 12159--12165
[][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one
 or two vari-ables, spec-i-fied via terms like
[2991]
Underfull \hbox (badness 10000) in paragraph at lines 12200--12201
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2992] [2993] [2994] [2995]
Underfull \vbox (badness 10000) has occurred while \output is active [2996]
Underfull \hbox (badness 10000) in paragraph at lines 12477--12479
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2997] [2998]
Underfull \hbox (badness 10000) in paragraph at lines 12607--12608
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2999] [3000] [3001]
Underfull \hbox (badness 1436) in paragraph at lines 12745--12752
\T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i
) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one
[3002] [3003]
Underfull \hbox (badness 10000) in paragraph at lines 12840--12841
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011] [3012] [3013]
Underfull \hbox (badness 10000) in paragraph at lines 13441--13447
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 1292) in paragraph at lines 13441--13447
\T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T
1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note
[3014] [3015] [3016]
Underfull \vbox (badness 10000) has occurred while \output is active [3017]
Underfull \vbox (badness 10000) has occurred while \output is active [3018]
[3019]
Underfull \hbox (badness 10000) in paragraph at lines 13784--13785
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3020] [3021] [3022] [3023]
Underfull \hbox (badness 3895) in paragraph at lines 14044--14047
[][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any
 num-ber of vari-ables, spec-i-fied via terms like
[3024]
Underfull \hbox (badness 10000) in paragraph at lines 14089--14091
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3025] [3026] [3027] [3028] [3029]
Underfull \hbox (badness 1371) in paragraph at lines 14363--14369
[]\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive
 smooths are avail-able (see
Underfull \hbox (badness 10000) in paragraph at lines 14403--14407
[][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/
zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre
ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n
/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14403--14407
[][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de
fined.smooth[][][]\T1/ptm/m/n/10 ,
Overfull \hbox (46.8009pt too wide) in paragraph at lines 14403--14407
[][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4
/m/it/10 factor.smooth.interaction[][][] 
[3030] [3031] [3032] [3033]
Underfull \hbox (badness 2326) in paragraph at lines 14608--14615
[]\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied
 us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and
[3034]
Underfull \hbox (badness 2158) in paragraph at lines 14693--14693
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045]
[3046] [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056]
[3057] [3058] [3059] [3060] [3061] [3062]
Underfull \hbox (badness 1796) in paragraph at lines 16345--16348
[]\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/
it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar
[3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071]) (./nlme-pkg.tex
[3072]
Chapter 25.
[3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083]
[3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094]
[3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102]
Underfull \hbox (badness 2875) in paragraph at lines 1996--2002
[]\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat-
ing a co-vari-ate
Underfull \hbox (badness 1466) in paragraph at lines 1996--2002
\T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1
0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 ,
[3103] [3104] [3105] [3106]
Underfull \hbox (badness 10000) in paragraph at lines 2258--2264
[][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi
alize.corStruct[][][]\T1/ptm/m/n/10 ,
[3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117]
[3118] [3119] [3120] [3121pdfTeX warning (ext4): destination with the same iden
tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor
ed
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  
l.3194 
       ] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130]
[3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139]
Underfull \hbox (badness 1067) in paragraph at lines 4419--4424
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150]
[3151]
Underfull \hbox (badness 10000) in paragraph at lines 5165--5169
[][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/
m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo
variate.varFunc[][][]\T1/ptm/m/n/10 ,
[3152] [3153] [3154] [3155] [3156] [3157] [3158]
Underfull \hbox (badness 10000) in paragraph at lines 5597--5600
[][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 
,
[3159] [3160] [3161] [3162] [3163] [3164] [3165]
Underfull \hbox (badness 10000) in paragraph at lines 5978--5983
[][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou
psFormula.lme[][][]\T1/ptm/m/n/10 ,
[3166] [3167] [3168] [3169]
Underfull \hbox (badness 1490) in paragraph at lines 6248--6259
[][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC
ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.
gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 ,
[3170]
Underfull \hbox (badness 10000) in paragraph at lines 6312--6314
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3171] [3172] [3173] [3174] [3175] [3176]
Underfull \hbox (badness 10000) in paragraph at lines 6726--6728
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3177] [3178] [3179] [3180]
Underfull \hbox (badness 10000) in paragraph at lines 6999--7006
[][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n
/10 ,
[3181] [3182] [3183] [3184]
Underfull \hbox (badness 10000) in paragraph at lines 7259--7264
[][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize
.glsStruct[][][]\T1/ptm/m/n/10 ,
[3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195]
[3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203]
Underfull \hbox (badness 10000) in paragraph at lines 8527--8529
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3204]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig
ma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8578 \aliasA{sigma}{lmeObject}{sigma}
                                        [3205] [3206] [3207] [3208]
Underfull \hbox (badness 10000) in paragraph at lines 8808--8815
[][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi
st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/
10 ,
[3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216]
Underfull \hbox (badness 10000) in paragraph at lines 9330--9337
[][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik
.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm
/m/n/10 ,
[3217] [3218] [3219] [3220] [3221]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [3222] [3223] [3224]
[3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233]
Underfull \hbox (badness 1596) in paragraph at lines 10465--10491
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3234] [3235]
Underfull \hbox (badness 1490) in paragraph at lines 10603--10609
[][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm
e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm
eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10
 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 ,
[3236] [3237] [3238] [3239]
Underfull \hbox (badness 10000) in paragraph at lines 10844--10846
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250]
[3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261]
[3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] [3270] [3271] [3272]
[3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281]
Underfull \hbox (badness 1286) in paragraph at lines 13742--13749
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it
/10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or
[3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289]
Underfull \hbox (badness 1215) in paragraph at lines 14288--14290
[]\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis.
 De-faults to
[3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300]
[3301] [3302]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.random.effects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15185 ...Extract Random Effects}{random.effects}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.random.effects.1}) has been already us
ed, duplicate ignored
<to be read again> 
                   \relax 
l.15185 ...Extract Random Effects}{random.effects}
                                                   [3303] [3304] [3305]
[3306] [3307] [3308] [3309] [3310] [3311] [3312]
Underfull \hbox (badness 3884) in paragraph at lines 15825--15829
[]\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199
7). Phar-ma-coki-
Underfull \hbox (badness 4846) in paragraph at lines 15825--15829
\T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap
-pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol-
Underfull \hbox (badness 1953) in paragraph at lines 15825--15829
\T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/
it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 /
 35925 /
[3313] [3314]
Underfull \hbox (badness 1067) in paragraph at lines 15937--15942
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[3315] [3316] [3317] [3318]
Underfull \hbox (badness 1448) in paragraph at lines 16180--16189
\T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for 
the "raw" resid-u-als (ob-served - fit-ted),
[3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328]
Underfull \hbox (badness 1728) in paragraph at lines 16885--16888
[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
[3329] [3330] [3331] [3332] [3333]
Underfull \hbox (badness 8056) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/
m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of
Underfull \hbox (badness 10000) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/
m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural
Underfull \hbox (badness 5756) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for
[3334] [3335] [3336] [3337] [3338]
Underfull \hbox (badness 10000) in paragraph at lines 17542--17550
[][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons
tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi
xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , []
[]\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 ,
[3339] [3340] [3341] [3342] [3343] [3344] [3345] [3346] [3347] [3348]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18262
[][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1
0 ,
Underfull \hbox (badness 10000) in paragraph at lines 18252--18262
[][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it
/10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa
ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10
 ,
[3349] [3350] [3351] [3352] [3353]
Underfull \hbox (badness 5036) in paragraph at lines 18576--18585
[][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari
ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/
m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 ,
[3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364]
[3365] [3366]) (./nnet-pkg.tex
Chapter 26.
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.multinom.1}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                   [3367]
Underfull \hbox (badness 1117) in paragraph at lines 79--88
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[3368] [3369] [3370] [3371] [3372] [3373] [3374]) (./rpart-pkg.tex
Chapter 27.
[3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385]
[3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396]
[3397] [3398] [3399] [3400] [3401] [3402] [3403]) (./spatial-pkg.tex [3404]
Chapter 28.
[3405] [3406] [3407] [3408] [3409] [3410]
Underfull \hbox (badness 10000) in paragraph at lines 423--427
[3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] [3421]
[3422] [3423]) (./survival-pkg.tex [3424]
Chapter 29.
[3425] [3426] [3427] [3428]
Underfull \hbox (badness 6412) in paragraph at lines 282--284
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3429] [3430]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.aml}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.382 ... Myelogenous Leukemia survival data}{aml}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.382 ... Myelogenous Leukemia survival data}{aml}
                                                   [3431] [3432] [3433]
[3434]
Overfull \vbox (3.85637pt too high) has occurred while \output is active
[3435] [3436] [3437] [3438] [3439] [3440] [3441]
Underfull \hbox (badness 1097) in paragraph at lines 1106--1108
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
[3442] [3443] [3444]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.colon}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1308 ...erapy for Stage B/C colon cancer}{colon}
                                                   [3445]
Underfull \hbox (badness 10000) in paragraph at lines 1356--1360
[]\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea
led by
[3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453]
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
\T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
\T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S
urv(time,status) ~ age +
Underfull \hbox (badness 2119) in paragraph at lines 1940--1955
\T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i
s un-nec-es-sary: ar-gu-ments within the
[3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464]
[3465] [3466] [3467] [3468] [3469]
Overfull \vbox (31.18587pt too high) has occurred while \output is active
[3470] [3471] [3472]
Underfull \hbox (badness 1389) in paragraph at lines 3300--3302
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
[3473] [3474] [3475] [3476]
Overfull \hbox (467.89665pt too wide) in alignment at lines 3586--3586
 [] [] 
Underfull \vbox (badness 10000) has occurred while \output is active [3477]
Overfull \vbox (8.56093pt too high) has occurred while \output is active
[3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] [3488]
[3489] [3490] [3491]
Overfull \vbox (11.01616pt too high) has occurred while \output is active
[3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502]
Underfull \hbox (badness 5274) in paragraph at lines 5316--5318
[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m
/n/10 , which is the re-sult of the
[3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513]
[3514] [3515] [3516] [3517] [3518] [3519]
Underfull \hbox (badness 1281) in paragraph at lines 6540--6543
[]\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response
"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d
fbeta"\T1/ptm/m/n/10 ,
[3520] [3521] [3522] [3523] [3524] [3525] [3526] [3527]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.solder}) has been already used, d
uplicate ignored
<to be read again> 
                   \relax 
l.7092 ...ata from a soldering experiment}{solder}
                                                   [3528] [3529] [3530]
[3531] [3532] [3533] [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541]
[3542] [3543] [3544] [3545] [3546]
Underfull \hbox (badness 10000) in paragraph at lines 8422--8431
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the
 form
[3547] [3548]
Underfull \hbox (badness 1038) in paragraph at lines 8578--8584
\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d
icted sur-vival
[3549] [3550] [3551] [3552] [3553]
Underfull \hbox (badness 10000) in paragraph at lines 8941--8946
[][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 ,
[3554] [3555] [3556] [3557] [3558] [3559] [3560] [3561] [3562] [3563] [3564]
[3565]
Underfull \hbox (badness 1354) in paragraph at lines 9860--9864
[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3566] [3567] [3568] [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576]
[3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587]
[3588] [3589]) [3590]
No file fullrefman.ind.
(./fullrefman.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.
 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.tree} has been referenced but does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Sobj.Rul.SpatialGrid} has been referenced but d
oes not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Rgshhs} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dnearneigh} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.as.Rul.dsTMatrix.Rul.listw} has been referenced
 but does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.similar.listw} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.nb2listw} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.read.gal} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.matrix.csr} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.SparseM.ontology} has been referenced but does 
not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.modelMatrix} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.model.Matrix} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.nearcor} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.posdefify} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.summary\\unhbox\040\\voidb@x\040\\kern\040\\z@\
040\\char\040`\\protect\040\\protect\040\\leavevmode@ifvmode\040\\kern\040+.166
67em\\relax\040sparseMatrix.Rdash.method} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.get.adjacency} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.graph.adjacency} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.graph} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.sqrtm} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.logm} has been referenced but does not exist, r
eplaced by a fixed one
pdfTeX warning (dest): name{Rfn.showClass} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.loglm1} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one
pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one
{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/share/tex
live/texmf-dist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist
/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/
lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/cm-super/cm-super-
ts1.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{
/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/sha
re/texlive/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4b.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4r.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/lm/lmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/lm/lmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi5.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/lm/lmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/lm/lmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy
5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy7.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/cm-super/sftt0900.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/cm-super/sftt1000.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts
/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/time
s/utmbi8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (3593 pages, 9257167 bytes).
Transcript written on fullrefman.log.
This is makeindex, version 2.15 [TeX Live 2021] (kpathsea + Thai support).
Scanning input file fullrefman.idx.............................done (25087 entries accepted, 78 rejected).
Sorting entries..............................................................................................................................................................................................................................................................................................done (423100 comparisons).
Generating output file fullrefman.ind...........................done (26183 lines written, 106 warnings).
Output written in fullrefman.ind.
Transcript written in fullrefman.ilg.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-05-07>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
(/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
(/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.
Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.
) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./fullrefman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv
e/texmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont ca
n be used only with embedded Type1 fonts
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplri' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplro' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvro' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmri' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmro' already exists, duplica
tes ignored
}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34]
[35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49])
[50] [1] [2] (./base-pkg.tex
Chapter 1.
[3] [4]
Underfull \hbox (badness 6995) in paragraph at lines 143--151
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As
Underfull \hbox (badness 4995) in paragraph at lines 143--151
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[5]
Underfull \hbox (badness 10000) in paragraph at lines 212--217
[]\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/
ptm/m/n/10 is true, there are 10 such
Underfull \hbox (badness 1675) in paragraph at lines 212--217
\T1/zi4/m/n/10 "longdouble.<kind>" \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T
1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor-
[6] [7]
Underfull \hbox (badness 1178) in paragraph at lines 322--325
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[8] [9] [10]
Underfull \hbox (badness 2556) in paragraph at lines 561--567
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[11] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[14] [15] [16] [17] [18] [19] [20] [21] [22]
(/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25]
Underfull \hbox (badness 10000) in paragraph at lines 1567--1573
[26] [27] [28] [29] [30] [31]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[32] [33] [34] [35] [36] [37] [38]
Underfull \hbox (badness 10000) in paragraph at lines 2492--2494
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by
Underfull \hbox (badness 10000) in paragraph at lines 2495--2500
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via
Underfull \hbox (badness 1102) in paragraph at lines 2495--2500
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51]
Underfull \vbox (badness 10000) has occurred while \output is active [52]
[53] [54] [55] [56] [57] [58]
Underfull \hbox (badness 10000) in paragraph at lines 3890--3892
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73]
[74] [75] [76]
Underfull \hbox (badness 2521) in paragraph at lines 5180--5182
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91]
[92] [93]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[94] [95] [96] [97] [98] [99]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 :
[100] [101] [102]
Underfull \hbox (badness 10000) in paragraph at lines 7020--7023
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[103] [104]
Underfull \hbox (badness 6063) in paragraph at lines 7202--7208
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
Underfull \hbox (badness 2343) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-
Underfull \hbox (badness 1708) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when
Underfull \hbox (badness 1831) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[105]
Underfull \hbox (badness 1303) in paragraph at lines 7264--7271
[]\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio
n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. 
This reads the
Underfull \hbox (badness 2111) in paragraph at lines 7275--7280
[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
 one of the X11 se-lec-tions may be able to do so via
[106] [107]
Underfull \vbox (badness 10000) has occurred while \output is active [108]
[109] [110]
Underfull \hbox (badness 1077) in paragraph at lines 7593--7599
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater
Underfull \hbox (badness 1231) in paragraph at lines 7593--7599
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[111] [112] [113] [114] [115]
Underfull \hbox (badness 2096) in paragraph at lines 7948--7952
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[116] [117]
Underfull \hbox (badness 2351) in paragraph at lines 8062--8065
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[118] [119] [120] [121] [122]
Underfull \hbox (badness 4479) in paragraph at lines 8388--8399
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[123] [124] [125] [126] [127]
Underfull \hbox (badness 1629) in paragraph at lines 8839--8851
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
Underfull \hbox (badness 1609) in paragraph at lines 8839--8851
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which
Underfull \hbox (badness 2426) in paragraph at lines 8839--8851
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
Underfull \hbox (badness 1178) in paragraph at lines 9596--9600
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150]
[151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
Underfull \hbox (badness 6396) in paragraph at lines 11228--11236
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
Underfull \hbox (badness 1946) in paragraph at lines 11228--11236
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173]
[174] [175] [176]
Underfull \hbox (badness 4569) in paragraph at lines 12377--12381
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment
Underfull \hbox (badness 2401) in paragraph at lines 12377--12381
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200]
Underfull \hbox (badness 2253) in paragraph at lines 14062--14064
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[201]
Underfull \hbox (badness 1565) in paragraph at lines 14138--14142
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[202]
Underfull \hbox (badness 4927) in paragraph at lines 14182--14184
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[203]
Underfull \hbox (badness 3148) in paragraph at lines 14284--14289
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[204]
Underfull \hbox (badness 1466) in paragraph at lines 14331--14334
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[205] [206]
Underfull \hbox (badness 10000) in paragraph at lines 14458--14462
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14469--14472
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[207] [208] [209] [210]
Underfull \hbox (badness 3965) in paragraph at lines 14766--14770
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222]
Underfull \hbox (badness 4429) in paragraph at lines 15546--15549
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[223]
Underfull \hbox (badness 10000) in paragraph at lines 15652--15654
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls
Underfull \hbox (badness 1215) in paragraph at lines 15652--15654
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see
Underfull \hbox (badness 10000) in paragraph at lines 15674--15679
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls
Underfull \hbox (badness 1558) in paragraph at lines 15674--15679
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not
Underfull \hbox (badness 10000) in paragraph at lines 15686--15690
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
Underfull \hbox (badness 2426) in paragraph at lines 15686--15690
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[224]
Underfull \hbox (badness 2035) in paragraph at lines 15725--15729
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[225]
Underfull \vbox (badness 10000) has occurred while \output is active [226]
[227] [228] [229] [230] [231] [232] [233]
Underfull \hbox (badness 2452) in paragraph at lines 16338--16342
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 16338--16342
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[234] [235] [236]
Underfull \hbox (badness 1092) in paragraph at lines 16511--16516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[237] [238] [239]
Underfull \hbox (badness 6741) in paragraph at lines 16764--16768
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[240] [241] [242] [243] [244] [245] [246] [247] [248]
Underfull \vbox (badness 10000) has occurred while \output is active [249]
[250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1478) in paragraph at lines 18113--18116
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[259] [260] [261]
Underfull \hbox (badness 10000) in paragraph at lines 18381--18383
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1442) in paragraph at lines 18980--18982
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[271] [272] [273] [274] [275]
Underfull \hbox (badness 10000) in paragraph at lines 19311--19317
[276] [277] [278]
Underfull \hbox (badness 1248) in paragraph at lines 19556--19559
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[279] [280] [281] [282]
Underfull \hbox (badness 4739) in paragraph at lines 19819--19821
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[283] [284] [285] [286]
Underfull \hbox (badness 1603) in paragraph at lines 20046--20049
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[287] [288] [289]
Underfull \hbox (badness 1596) in paragraph at lines 20273--20278
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[290] [291] [292] [293] [294] [295] [296] [297] [298] [299]
Underfull \hbox (badness 2469) in paragraph at lines 20878--20883
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and
[300]
Underfull \hbox (badness 10000) in paragraph at lines 20972--20976
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory
[301] [302]
Underfull \hbox (badness 1014) in paragraph at lines 21142--21147
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314]
Underfull \hbox (badness 1264) in paragraph at lines 21991--21996
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[315]
Underfull \hbox (badness 4441) in paragraph at lines 22020--22023
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325]
Underfull \hbox (badness 6047) in paragraph at lines 22794--22796
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337]
[338] [339] [340] [341] [342]
Underfull \hbox (badness 10000) in paragraph at lines 23874--23880
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 23874--23880
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[343] [344] [345] [346] [347] [348] [349] [350]
Underfull \hbox (badness 2790) in paragraph at lines 24375--24378
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24375--24378
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[351] [352] [353]
Underfull \hbox (badness 1194) in paragraph at lines 24664--24667
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[354] [355] [356]
Underfull \hbox (badness 2368) in paragraph at lines 24871--24877
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,
Underfull \hbox (badness 4981) in paragraph at lines 24871--24877
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[357] [358] [359] [360] [361] [362]
Underfull \hbox (badness 10000) in paragraph at lines 25256--25259
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[363] [364] [365] [366] [367] [368] [369] [370] [371]
Underfull \hbox (badness 10000) in paragraph at lines 25876--25878
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 1038) in paragraph at lines 26737--26745
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially
Underfull \hbox (badness 1735) in paragraph at lines 26737--26745
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-
Underfull \hbox (badness 1292) in paragraph at lines 26737--26745
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set
Underfull \hbox (badness 1881) in paragraph at lines 26746--26749
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 26770--26772
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[384] [385]
Underfull \hbox (badness 2142) in paragraph at lines 26911--26915
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 26968--26973
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[386] [387] [388]
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27275--27278
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[389]
Underfull \hbox (badness 2689) in paragraph at lines 27301--27303
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
Underfull \hbox (badness 10000) in paragraph at lines 27336--27341
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27342--27353
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27342--27353
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
Underfull \hbox (badness 7203) in paragraph at lines 27354--27357
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and
[390] [391] [392] [393] [394] [395] [396] [397]
Underfull \hbox (badness 10000) in paragraph at lines 27901--27904
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[398]
Underfull \hbox (badness 7925) in paragraph at lines 27982--27986
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to
Underfull \hbox (badness 1622) in paragraph at lines 27982--27986
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 6125) in paragraph at lines 27987--27996
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
[411] [412]
Underfull \hbox (badness 2726) in paragraph at lines 28935--28938
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423]
Underfull \hbox (badness 1603) in paragraph at lines 29685--29688
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[424] [425] [426] [427] [428] [429]
Underfull \vbox (badness 10000) has occurred while \output is active [430]
[431] [432] [433] [434] [435] [436] [437]
Underfull \hbox (badness 1533) in paragraph at lines 30713--30716
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[438] [439]
Underfull \hbox (badness 1163) in paragraph at lines 30876--30887
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450]
Underfull \vbox (badness 10000) has occurred while \output is active [451]
[452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463]
Underfull \hbox (badness 10000) in paragraph at lines 32539--32543
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 32539--32543
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[464]
Underfull \hbox (badness 3557) in paragraph at lines 32560--32562
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 32563--32567
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/
10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht
tps : / / www . pcre . org /
[465] [466] [467] [468] [469] [470] [471] [472]
Underfull \hbox (badness 1655) in paragraph at lines 33157--33159
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484]
[485] [486] [487] [488] [489] [490]
Underfull \hbox (badness 2261) in paragraph at lines 34349--34354
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
Underfull \hbox (badness 10000) in paragraph at lines 34376--34382
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
Underfull \hbox (badness 1484) in paragraph at lines 34376--34382
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526]
[527]
Underfull \hbox (badness 10000) in paragraph at lines 36987--36989
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[528] [529] [530] [531] [532] [533] [534] [535]
Underfull \hbox (badness 1072) in paragraph at lines 37584--37588
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 37589--37593
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
Underfull \hbox (badness 10000) in paragraph at lines 37619--37625
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 37619--37625
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 37619--37625
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 37634--37641
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[536] [537] [538] [539]
Underfull \hbox (badness 2644) in paragraph at lines 37866--37870
[]\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[540] [541]
Underfull \hbox (badness 1142) in paragraph at lines 38018--38024
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553]
[554] [555] [556] [557] [558] [559]
Underfull \hbox (badness 1565) in paragraph at lines 39297--39299
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[560] [561] [562] [563] [564] [565] [566] [567] [568]
Underfull \hbox (badness 1137) in paragraph at lines 39887--39893
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
Underfull \hbox (badness 4967) in paragraph at lines 39906--39911
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[569] [570]
Underfull \hbox (badness 1616) in paragraph at lines 40026--40031
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[571] [572] [573] [574] [575] [576] [577] [578]
Underfull \hbox (badness 1472) in paragraph at lines 40568--40571
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590]
[591]
Underfull \hbox (badness 10000) in paragraph at lines 41487--41491
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[592] [593] [594] [595]
Underfull \hbox (badness 10000) in paragraph at lines 41738--41741
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[596] [597] [598]
Underfull \hbox (badness 10000) in paragraph at lines 41922--41926
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[599] [600] [601] [602] [603] [604] [605] [606]
Underfull \hbox (badness 10000) in paragraph at lines 42547--42550
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618]
[619]
Underfull \hbox (badness 1990) in paragraph at lines 43469--43477
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 43469--43477
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[620] [621] [622] [623] [624] [625] [626] [627]
Underfull \hbox (badness 1917) in paragraph at lines 43975--43982
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[628] [629] [630] [631] [632] [633]
Underfull \hbox (badness 2452) in paragraph at lines 44428--44434
[][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 ,
[634] [635] [636] [637] [638] [639]
Underfull \hbox (badness 3668) in paragraph at lines 44802--44804
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[640]
Underfull \hbox (badness 2401) in paragraph at lines 44932--44936
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[641] [642] [643]
Underfull \hbox (badness 2111) in paragraph at lines 45139--45144
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.
[644]
Underfull \hbox (badness 10000) in paragraph at lines 45160--45165
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[645] [646] [647]
Underfull \hbox (badness 4001) in paragraph at lines 45385--45387
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[648] [649] [650] [651] [652]
Underfull \hbox (badness 5417) in paragraph at lines 45750--45754
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[653]
Underfull \hbox (badness 10000) in paragraph at lines 45811--45815
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[654]) (./compiler-pkg.tex
Chapter 2.
[655] [656] [657] [658]) (./datasets-pkg.tex
Chapter 3.
[659] [660] [661] [662] [663] [664]
Underfull \vbox (badness 1472) has occurred while \output is active [665]
[666] [667] [668] [669] [670] [671] [672] [673] [674]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686]
[687] [688] [689] [690] [691] [692] [693] [694] [695]
Overfull \vbox (4.26088pt too high) has occurred while \output is active
[696] [697] [698] [699] [700] [701]
Overfull \vbox (13.87083pt too high) has occurred while \output is active
[702]
Underfull \vbox (badness 2376) has occurred while \output is active [703]
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718]
Overfull \vbox (10.49593pt too high) has occurred while \output is active
[719]
Overfull \vbox (15.49593pt too high) has occurred while \output is active
[720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731]
[732] [733] [734]) (./grDevices-pkg.tex
Chapter 4.
[735] [736] [737] [738]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to
Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in
Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[739] [740] [741] [742] [743] [744] [745] [746] [747]
Underfull \hbox (badness 1424) in paragraph at lines 898--900
[][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and 
\T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i
-fied as
[748] [749] [750] [751] [752]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[753] [754]
Underfull \hbox (badness 2512) in paragraph at lines 1311--1313
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[755]
Underfull \hbox (badness 1852) in paragraph at lines 1405--1408
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[756] [757] [758]
Underfull \hbox (badness 1490) in paragraph at lines 1611--1616
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[759] [760] [761] [762] [763] [764]
Underfull \hbox (badness 1325) in paragraph at lines 2017--2027
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[765]
Underfull \hbox (badness 10000) in paragraph at lines 2129--2131
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[766] [767] [768]
Underfull \hbox (badness 6758) in paragraph at lines 2308--2311
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[769] [770] [771] [772] [773] [774] [775] [776] [777]
Underfull \hbox (badness 10000) in paragraph at lines 2919--2920
Underfull \vbox (badness 10000) has occurred while \output is active [778]
[779] [780] [781] [782] [783] [784] [785]
Underfull \hbox (badness 10000) in paragraph at lines 3493--3498
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[786] [787] [788] [789] [790] [791] [792]
Underfull \vbox (badness 10000) has occurred while \output is active [793]
Underfull \hbox (badness 10000) in paragraph at lines 3992--3995
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[794] [795] [796] [797] [798] [799] [800] [801] [802] [803]
Underfull \hbox (badness 10000) in paragraph at lines 4732--4737
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]
Underfull \hbox (badness 10000) in paragraph at lines 4732--4737
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte
nt / dam / acom / en / devnet / acrobat / pdfs / pdf _
Underfull \hbox (badness 1881) in paragraph at lines 4732--4737
\T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc
-tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac .
[804]
Underfull \vbox (badness 10000) has occurred while \output is active [805]
[806]
Underfull \hbox (badness 1584) in paragraph at lines 4888--4890
[]\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/
n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
Underfull \hbox (badness 1067) in paragraph at lines 4892--4899
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[807] [808] [809] [810]
Underfull \hbox (badness 1377) in paragraph at lines 5198--5203
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[811]
Underfull \hbox (badness 1418) in paragraph at lines 5274--5281
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,
Underfull \hbox (badness 1755) in paragraph at lines 5292--5294
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[812]
Underfull \hbox (badness 1377) in paragraph at lines 5403--5408
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[813]
Underfull \hbox (badness 7344) in paragraph at lines 5472--5474
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[814] [815]
Underfull \hbox (badness 2035) in paragraph at lines 5610--5619
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
Underfull \hbox (badness 10000) in paragraph at lines 5610--5619
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,
Underfull \hbox (badness 10000) in paragraph at lines 5610--5619
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[816] [817]
Underfull \hbox (badness 10000) in paragraph at lines 5678--5680
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[818] [819]
Underfull \hbox (badness 1546) in paragraph at lines 5820--5828
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[820] [821] [822] [823] [824] [825] [826] [827]
Underfull \hbox (badness 10000) in paragraph at lines 6358--6361
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839]
Underfull \hbox (badness 1189) in paragraph at lines 7184--7186
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[840]
Underfull \hbox (badness 10000) in paragraph at lines 7289--7291
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[841] [842] [843] [844] [845]
Underfull \hbox (badness 3780) in paragraph at lines 7603--7609
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[846] [847]
Underfull \hbox (badness 2680) in paragraph at lines 7805--7807
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[848] [849] [850]) (./graphics-pkg.tex
Chapter 5.
[851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862]
[863] [864] [865]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [866]
[867] [868] [869] [870] [871]
Underfull \hbox (badness 4634) in paragraph at lines 1355--1358
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883]
[884] [885] [886]
Underfull \hbox (badness 1728) in paragraph at lines 2333--2335
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n
" \T1/ptm/m/n/10 to sup-press and see also
[887]
Underfull \hbox (badness 1009) in paragraph at lines 2426--2433
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899]
[900] [901] [902] [903] [904] [905] [906] [907] [908]
Underfull \vbox (badness 10000) has occurred while \output is active [909]
[910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920]
Underfull \hbox (badness 3229) in paragraph at lines 4602--4607
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[921] [922] [923] [924]
Underfull \hbox (badness 10000) in paragraph at lines 5032--5038
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.
Underfull \hbox (badness 5908) in paragraph at lines 5032--5038
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[925] [926]
Underfull \hbox (badness 10000) in paragraph at lines 5163--5166
[927 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5224--5226
[928 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//oma.pdf>]
[929]
Underfull \hbox (badness 10000) in paragraph at lines 5414--5416
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[930] [931] [932] [933] [934] [935] [936] [937]pdfTeX warning (ext4): destinati
on with the same identifier (name{Rfn.plot}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.5896 \aliasA{plot}{plot.default}{plot}
                                         [938] [939] [940] [941] [942] [943]
[944] [945] [946] [947] [948] [949] [950]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802
[][] 
[951 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//pch.pdf>]
[952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963]
Underfull \hbox (badness 2012) in paragraph at lines 7623--7626
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975]
[976] [977] [978] [979] [980] [981] [982]
Underfull \hbox (badness 10000) in paragraph at lines 8889--8891
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color
Underfull \hbox (badness 10000) in paragraph at lines 8891--8893
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[983]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8971 \HeaderA{units}{Graphical Units}{units}
                                               [984] [985] [986] [987])
(./grid-pkg.tex [988]
Chapter 6.
[989] [990] [991] [992] [993] [994] [995] [996]
Underfull \hbox (badness 2680) in paragraph at lines 486--489
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005]
Underfull \hbox (badness 4279) in paragraph at lines 1112--1121
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1006]
Underfull \vbox (badness 10000) has occurred while \output is active [1007]
[1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018]
[1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029]
[1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040]
[1041] [1042] [1043] [1044] [1045] [1046]
Underfull \vbox (badness 10000) has occurred while \output is active [1047]
[1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058]
[1059]
Underfull \hbox (badness 1067) in paragraph at lines 4537--4540
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1060] [1061] [1062] [1063]
Underfull \hbox (badness 7256) in paragraph at lines 4782--4784
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074]
[1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085]
[1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094]
Underfull \hbox (badness 1824) in paragraph at lines 6753--6756
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1095] [1096] [1097] [1098]) (./methods-pkg.tex
Chapter 7.
[1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106]
Underfull \vbox (badness 10000) has occurred while \output is active [1107]
Underfull \vbox (badness 10000) has occurred while \output is active [1108]
[1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class
Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1125] [1126] [1127]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1128] [1129] [1130] [1131] [1132]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1133] [1134]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1135] [1136] [1137] [1138] [1139] [1140] [1141]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1142] [1143] [1144] [1145] [1146]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1147] [1148]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166]
Underfull \vbox (badness 10000) has occurred while \output is active [1167]
Underfull \vbox (badness 10000) has occurred while \output is active [1168]
[1169] [1170]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1171]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1172] [1173] [1174]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1183] [1184] [1185] [1186]
Underfull \vbox (badness 10000) has occurred while \output is active [1187]
[1188] [1189]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1190] [1191] [1192]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1193]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1194] [1195]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206]
[1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217]
[1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1229] [1230] [1231] [1232] [1233] [1234] [1235]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1236] [1237] [1238]) (./parallel-pkg.tex
Chapter 8.
Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1239] [1240] [1241] [1242]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253]
[1254] [1255] [1256] [1257] [1258]
Underfull \hbox (badness 3386) in paragraph at lines 1401--1404
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1259] [1260] [1261]) (./splines-pkg.tex [1262]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273]
[1274] [1275] [1276]) (./stats-pkg.tex
Chapter 10.
[1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287]
[1288] [1289]
Underfull \hbox (badness 1412) in paragraph at lines 882--884
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1290] [1291] [1292] [1293] [1294] [1295] [1296]
Underfull \hbox (badness 2503) in paragraph at lines 1364--1367
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1297] [1298] [1299]
Underfull \hbox (badness 10000) in paragraph at lines 1544--1548
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310]
[1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
[1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 2503) in paragraph at lines 3514--3517
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338]
[1339] [1340] [1341]
Underfull \hbox (badness 1127) in paragraph at lines 4430--4433
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1342] [1343] [1344] [1345] [1346]
Underfull \hbox (badness 3989) in paragraph at lines 4770--4777
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 2556) in paragraph at lines 5406--5409
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For
Underfull \hbox (badness 2932) in paragraph at lines 5423--5425
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1356] [1357] [1358] [1359] [1360] [1361]
Underfull \hbox (badness 2503) in paragraph at lines 5820--5824
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372]
[1373] [1374]
Underfull \hbox (badness 7081) in paragraph at lines 6614--6617
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method
Underfull \hbox (badness 10000) in paragraph at lines 6618--6620
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385]
[1386]
Underfull \hbox (badness 10000) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397]
[1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407]
Underfull \vbox (badness 10000) has occurred while \output is active [1408]
[1409] [1410] [1411]
Underfull \hbox (badness 2626) in paragraph at lines 9144--9147
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1412] [1413]
Underfull \hbox (badness 2503) in paragraph at lines 9251--9255
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424]
[1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432]
Underfull \hbox (badness 4518) in paragraph at lines 10587--10592
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1433] [1434] [1435] [1436] [1437]
Underfull \hbox (badness 2142) in paragraph at lines 10948--10951
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
Underfull \hbox (badness 1253) in paragraph at lines 10967--10970
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1438]
Underfull \hbox (badness 1708) in paragraph at lines 11029--11033
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1439] [1440] [1441] [1442] [1443]
Underfull \hbox (badness 1694) in paragraph at lines 11425--11428
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11909 \aliasA{hat}{influence.measures}{hat}
                                              [1452] [1453]
Underfull \hbox (badness 1484) in paragraph at lines 12051--12053
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462]
Underfull \hbox (badness 10000) in paragraph at lines 12650--12652
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1463] [1464] [1465] [1466] [1467]
Underfull \hbox (badness 2894) in paragraph at lines 12986--12990
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478]
[1479]
Underfull \hbox (badness 4518) in paragraph at lines 13737--13742
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488]
Underfull \hbox (badness 4518) in paragraph at lines 14390--14395
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1489] [1490]
Underfull \hbox (badness 8151) in paragraph at lines 14528--14532
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =
Underfull \hbox (badness 1199) in paragraph at lines 14535--14537
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501]
[1502] [1503] [1504] [1505] [1506] [1507]
Underfull \hbox (badness 2503) in paragraph at lines 15611--15615
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515]
Underfull \hbox (badness 10000) in paragraph at lines 16124--16130
[]\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo
del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to
Underfull \hbox (badness 1867) in paragraph at lines 16124--16130
\T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response
(m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s
ums any terms
[1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526]
[1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537]
[1538] [1539]
Underfull \hbox (badness 1158) in paragraph at lines 17767--17770
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm
/m/n/10 as the data ar-gu-ment. The ac-
[1540] [1541]
Underfull \vbox (badness 10000) has occurred while \output is active [1542]
Underfull \vbox (badness 10000) has occurred while \output is active [1543]
[1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554]
Underfull \hbox (badness 1377) in paragraph at lines 18790--18795
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
[1555]
Underfull \hbox (badness 1735) in paragraph at lines 18795--18798
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 2343) in paragraph at lines 18808--18812
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 3471) in paragraph at lines 18808--18812
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to
Underfull \hbox (badness 2662) in paragraph at lines 18816--18820
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1556] [1557] [1558]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1559] [1560] [1561] [1562] [1563] [1564] [1565]
Underfull \hbox (badness 1337) in paragraph at lines 19503--19506
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 3049) in paragraph at lines 20001--20005
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1574] [1575] [1576] [1577]
Underfull \hbox (badness 1194) in paragraph at lines 20264--20267
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1578] [1579] [1580] [1581] [1582] [1583] [1584]
Underfull \hbox (badness 2503) in paragraph at lines 20643--20646
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3919) in paragraph at lines 20670--20672
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
[1596] [1597] [1598] [1599] [1600]
Underfull \hbox (badness 10000) in paragraph at lines 21748--21754
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611]
[1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621]
Underfull \hbox (badness 1337) in paragraph at lines 23105--23111
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1622] [1623] [1624] [1625] [1626] [1627] [1628]
Underfull \hbox (badness 3780) in paragraph at lines 23530--23533
[]\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th
e pre-ci-sion to use when for-mat-
Underfull \hbox (badness 1152) in paragraph at lines 23530--23533
\T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s
ions up to 4.0.x, this had been set to
[1629] [1630]
Underfull \hbox (badness 10000) in paragraph at lines 23671--23672
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1631] [1632] [1633] [1634]
Underfull \hbox (badness 10000) in paragraph at lines 23955--23958
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
Underfull \hbox (badness 4205) in paragraph at lines 23955--23958
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644]
Underfull \hbox (badness 1824) in paragraph at lines 24632--24638
[]\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first
 re-placed by al-ter-
Underfull \hbox (badness 1033) in paragraph at lines 24632--24638
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
Underfull \hbox (badness 10000) in paragraph at lines 24653--24656
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1645]
Underfull \hbox (badness 3690) in paragraph at lines 24722--24726
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653]
Underfull \hbox (badness 2165) in paragraph at lines 25234--25239
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1654] [1655] [1656] [1657]
Underfull \hbox (badness 1867) in paragraph at lines 25439--25441
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 25454--25458
[]\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback =
 use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667]
Underfull \vbox (badness 10000) has occurred while \output is active [1668]
[1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678]
Underfull \vbox (badness 10000) has occurred while \output is active [1679]
[1680]
Underfull \hbox (badness 3514) in paragraph at lines 27017--27022
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1681] [1682] [1683]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1684]
Underfull \hbox (badness 3514) in paragraph at lines 27287--27293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1685]
Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344
 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 
Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346
 []           \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1686] [1687] [1688]
Underfull \hbox (badness 3514) in paragraph at lines 27520--27525
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 27607--27612
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690]
Underfull \hbox (badness 3514) in paragraph at lines 27672--27677
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1691] [1692]
Underfull \hbox (badness 3514) in paragraph at lines 27766--27771
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1693]
Underfull \hbox (badness 6691) in paragraph at lines 27858--27863
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701]
Underfull \hbox (badness 4024) in paragraph at lines 28349--28352
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710]
Underfull \hbox (badness 5431) in paragraph at lines 28955--28957
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1711] [1712] [1713] [1714]
Underfull \hbox (badness 5431) in paragraph at lines 29165--29168
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1715] [1716] [1717] [1718] [1719]
Underfull \hbox (badness 1337) in paragraph at lines 29480--29484
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1720] [1721] [1722] [1723]
Underfull \hbox (badness 1616) in paragraph at lines 29792--29795
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734]
[1735] [1736] [1737] [1738] [1739] [1740] [1741]
Underfull \hbox (badness 3557) in paragraph at lines 30927--30931
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1742] [1743]
Underfull \vbox (badness 10000) has occurred while \output is active [1744]
[1745] [1746]
Underfull \hbox (badness 1337) in paragraph at lines 31291--31295
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754]
Underfull \hbox (badness 1337) in paragraph at lines 31820--31824
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
Underfull \hbox (badness 10000) in paragraph at lines 31834--31836
[]\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i
-tive nu-meric tol-er-ance, used in
[1755] [1756] [1757]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1758] [1759]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188
 []      \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1760] [1761] [1762] [1763] [1764]) (./stats4-pkg.tex
Chapter 11.
[1765] [1766] [1767]
Underfull \vbox (badness 10000) has occurred while \output is active [1768]
[1769] [1770] [1771] [1772]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1773] [1774] [1775])
(./tcltk-pkg.tex [1776]
Chapter 12.
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \vbox (badness 10000) has occurred while \output is active [1784]
Underfull \hbox (badness 1546) in paragraph at lines 666--673
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795]
[1796]) (./tools-pkg.tex
Chapter 13.
[1797]
LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.
[1798]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1799] [1800]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
Underfull \hbox (badness 10000) in paragraph at lines 288--301
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 288--301
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1801]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1802] [1803]
Underfull \hbox (badness 1142) in paragraph at lines 463--467
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1804] [1805] [1806] [1807] [1808]
Overfull \vbox (7.18602pt too high) has occurred while \output is active
[1809] [1810] [1811] [1812] [1813] [1814]
Underfull \hbox (badness 1014) in paragraph at lines 1174--1176
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
Underfull \hbox (badness 7238) in paragraph at lines 1180--1182
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
Underfull \hbox (badness 10000) in paragraph at lines 1217--1220
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1815] [1816] [1817] [1818] [1819]
Underfull \hbox (badness 2293) in paragraph at lines 1569--1571
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1820] [1821]
Underfull \hbox (badness 7981) in paragraph at lines 1707--1715
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1822]
Underfull \hbox (badness 1082) in paragraph at lines 1717--1719
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1823] [1824] [1825]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.GSC}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       pdfTeX warning (ext4): destination with 
the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1826] [1827] [1828]
[1829]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1830] [1831] [1832]
Underfull \hbox (badness 7981) in paragraph at lines 2391--2399
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1833] [1834] [1835] [1836] [1837] [1838] [1839]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2885.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2886.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2886.
[1840] [1841] [1842] [1843]
Underfull \hbox (badness 1424) in paragraph at lines 3177--3179
[]\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854]
Underfull \hbox (badness 10000) in paragraph at lines 3878--3880
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1855] [1856]
Underfull \hbox (badness 10000) in paragraph at lines 4017--4020
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1857]
Underfull \hbox (badness 1137) in paragraph at lines 4119--4121
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1858] [1859] [1860] [1861] [1862]
Underfull \hbox (badness 1796) in paragraph at lines 4427--4432
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type ==
[1863]
Underfull \hbox (badness 1838) in paragraph at lines 4501--4507
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The
Underfull \hbox (badness 10000) in paragraph at lines 4501--4507
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1864] [1865] [1866] [1867]
Underfull \hbox (badness 2197) in paragraph at lines 4776--4786
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/it/10 available.packages[][][]\T1/ptm/m/n/10 :
[1868]
Underfull \hbox (badness 1571) in paragraph at lines 4842--4846
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1869] [1870] [1871]) (./utils-pkg.tex [1872]
Chapter 14.
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ',
[1873] [1874] [1875] [1876] [1877]
Underfull \hbox (badness 10000) in paragraph at lines 378--383
\T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1878] [1879] [1880] [1881] [1882]
Underfull \hbox (badness 10000) in paragraph at lines 720--726
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3343) in paragraph at lines 720--726
\T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1883] [1884]
Underfull \hbox (badness 5847) in paragraph at lines 857--863
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-
Underfull \hbox (badness 4229) in paragraph at lines 857--863
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1885]
Underfull \hbox (badness 3861) in paragraph at lines 925--930
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1886] [1887] [1888]
Underfull \hbox (badness 3323) in paragraph at lines 1108--1116
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-
Underfull \hbox (badness 2961) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
Underfull \hbox (badness 3919) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
Underfull \hbox (badness 3735) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally.
Underfull \hbox (badness 1817) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1889] [1890] [1891] [1892] [1893] [1894] [1895]
Underfull \hbox (badness 1371) in paragraph at lines 1625--1627
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to
[1896]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 1695.
[1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905]
Underfull \hbox (badness 2057) in paragraph at lines 2346--2348
[]\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1906] [1907] [1908] [1909] [1910]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2697 ... the Clipboard in MS Windows}{clipboard}
                                                   [1911] [1912] [1913]
Underfull \hbox (badness 1748) in paragraph at lines 2864--2867
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1914] [1915] [1916] [1917] [1918] [1919]
Underfull \hbox (badness 5388) in paragraph at lines 3274--3278
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header =
Underfull \hbox (badness 2285) in paragraph at lines 3279--3282
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[]
[][](...,header = TRUE,sep =
[1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930]
Underfull \hbox (badness 1430) in paragraph at lines 4063--4071
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[1931]
Underfull \hbox (badness 1231) in paragraph at lines 4140--4152
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1932] [1933]
Underfull \hbox (badness 10000) in paragraph at lines 4297--4299
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943]pdfTeX war
ning (ext4): destination with the same identifier (name{Rfn.format}) has been a
lready used, duplicate ignored
<to be read again> 
                   \relax 
l.4995 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4995 ...mat Unordered and Ordered Lists}{format}
                                                   [1944] [1945] [1946]
[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1622) in paragraph at lines 5514--5518
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 6232.
[1962]
Underfull \hbox (badness 1371) in paragraph at lines 6236--6238
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to
[1963]
Underfull \hbox (badness 1502) in paragraph at lines 6325--6330
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6325--6330
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1964] [1965]
Underfull \hbox (badness 10000) in paragraph at lines 6498--6507
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1966]
Underfull \hbox (badness 2150) in paragraph at lines 6562--6565
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[1967] [1968]
Underfull \hbox (badness 3118) in paragraph at lines 6701--6703
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1969] [1970]
Underfull \hbox (badness 1325) in paragraph at lines 6880--6884
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
Underfull \hbox (badness 4726) in paragraph at lines 6892--6898
\T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[1971]
Underfull \hbox (badness 10000) in paragraph at lines 6964--6967
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be
Underfull \hbox (badness 10000) in paragraph at lines 6964--6967
\T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
Underfull \hbox (badness 1424) in paragraph at lines 6972--6975
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[1972]
Underfull \hbox (badness 3219) in paragraph at lines 7043--7050
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7043--7050
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
Underfull \hbox (badness 1342) in paragraph at lines 7043--7050
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
Underfull \hbox (badness 1596) in paragraph at lines 7043--7050
[][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently
Underfull \hbox (badness 2932) in paragraph at lines 7051--7054
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[1973] [1974]
Underfull \hbox (badness 1546) in paragraph at lines 7177--7180
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa
ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m
/n/10 will
Underfull \hbox (badness 10000) in paragraph at lines 7210--7215
[][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985]
[1986]
Underfull \hbox (badness 10000) in paragraph at lines 7997--7999
[]\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/
n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994]
Underfull \vbox (badness 10000) has occurred while \output is active [1995]
[1996] [1997] [1998]
Underfull \hbox (badness 10000) in paragraph at lines 8735--8737
[]\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from
Underfull \hbox (badness 2310) in paragraph at lines 8757--8762
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1999] [2000] [2001] [2002] [2003] [2004] [2005]
Underfull \hbox (badness 1248) in paragraph at lines 9283--9287
[]\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2006]
Underfull \hbox (badness 1789) in paragraph at lines 9363--9365
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014] [2015]
Underfull \vbox (badness 5533) has occurred while \output is active [2016]
[2017] [2018]
Underfull \hbox (badness 1097) in paragraph at lines 10200--10203
[]\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2019] [2020]
Underfull \hbox (badness 3000) in paragraph at lines 10336--10341
[][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028]
Underfull \hbox (badness 2134) in paragraph at lines 10925--10930
[][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write.
table[][][]\T1/ptm/m/n/10 ;
[2029]
Underfull \hbox (badness 10000) in paragraph at lines 10981--10986
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
Underfull \hbox (badness 10000) in paragraph at lines 10981--10986
\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2030] [2031] [2032] [2033] [2034] [2035] [2036]
Underfull \hbox (badness 2469) in paragraph at lines 11475--11479
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
Underfull \hbox (badness 3428) in paragraph at lines 11475--11479
[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2037] [2038] [2039] [2040] [2041] [2042]
Underfull \hbox (badness 4060) in paragraph at lines 11891--11894
[]\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able
[2043]
Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2044] [2045] [2046]
Underfull \hbox (badness 2150) in paragraph at lines 12162--12164
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
[2047] [2048] [2049] [2050]
Underfull \hbox (badness 10000) in paragraph at lines 12381--12385
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 12412--12418
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2051] [2052]
Underfull \hbox (badness 1009) in paragraph at lines 12606--12618
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2053]
Underfull \hbox (badness 4779) in paragraph at lines 12646--12648
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
Underfull \hbox (badness 1077) in paragraph at lines 12676--12683
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2054] [2055] [2056] [2057] [2058] [2059]
Underfull \hbox (badness 3780) in paragraph at lines 13084--13088
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via
Underfull \hbox (badness 2635) in paragraph at lines 13100--13103
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2060] [2061] [2062]
Underfull \hbox (badness 2302) in paragraph at lines 13305--13307
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2063] [2064] [2065] [2066] [2067]
Underfull \hbox (badness 10000) in paragraph at lines 13603--13608
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/it/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have
Underfull \hbox (badness 5970) in paragraph at lines 13612--13615
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 2932) in paragraph at lines 14050--14057
[]\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,
Underfull \hbox (badness 1688) in paragraph at lines 14050--14057
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2074] [2075] [2076] [2077]
Underfull \hbox (badness 6510) in paragraph at lines 14358--14362
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble
Underfull \hbox (badness 10000) in paragraph at lines 14365--14368
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /
Underfull \hbox (badness 2245) in paragraph at lines 14365--14368
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087]
Underfull \hbox (badness 10000) in paragraph at lines 15032--15037
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to
Underfull \hbox (badness 3861) in paragraph at lines 15032--15037
[][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n
/10 and
Underfull \hbox (badness 1052) in paragraph at lines 15038--15040
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2088]
Underfull \hbox (badness 10000) in paragraph at lines 15097--15100
[][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099]
[2100]
Underfull \hbox (badness 10000) in paragraph at lines 15875--15877
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/it/10 file =
[2101] [2102] [2103]) [2104] [2105] [2106] (./KernSmooth-pkg.tex
Chapter 15.
[2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116])
(./MASS-pkg.tex
Chapter 16.
[2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127]
[2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138]
[2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149]
[2150] [2151] [2152] [2153]
Underfull \hbox (badness 7944) in paragraph at lines 2703--2706
[]\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an
d graph-i-cal pa-ram-e-ters. Note that
[2154] [2155] [2156]
Underfull \hbox (badness 10000) in paragraph at lines 2873--2878
\T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm
/m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic
"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative
[2157] [2158]
Underfull \hbox (badness 4686) in paragraph at lines 3041--3043
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169]
[2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180]
[2181] [2182] [2183]
Underfull \hbox (badness 1117) in paragraph at lines 4802--4805
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2184]
Underfull \hbox (badness 1117) in paragraph at lines 4880--4883
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195]
[2196] [2197] [2198] [2199] [2200] [2201]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6146 ...sical N, P, K Factorial Experiment}{npk}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.6146 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2202] [2203] [2204]
[2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214]
Underfull \hbox (badness 1117) in paragraph at lines 7117--7124
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2215]
Underfull \hbox (badness 3138) in paragraph at lines 7188--7194
[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2216] [2217] [2218]
Underfull \hbox (badness 6775) in paragraph at lines 7367--7370
\T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n
ant com-po-nents are used (ex-cept for
[2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227]
Underfull \hbox (badness 4686) in paragraph at lines 8000--8002
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238]
[2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249]
[2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260]
[2261] [2262] [2263] [2264]) (./Matrix-pkg.tex
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 41--44
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
Underfull \hbox (badness 10000) in paragraph at lines 41--44
\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2265]
Underfull \hbox (badness 1769) in paragraph at lines 95--98
[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2266] [2267] [2268] [2269]
Underfull \hbox (badness 5119) in paragraph at lines 509--513
[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
[2270] [2271]
Underfull \hbox (badness 2035) in paragraph at lines 605--608
[]\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-her-its
 from class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1
/zi4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a
[2272] [2273]
Underfull \hbox (badness 1701) in paragraph at lines 758--762
[]\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t
ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org /
[2274] [2275]
Underfull \hbox (badness 5175) in paragraph at lines 877--882
[]\T1/ptm/m/n/10 option [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-
cat-ing if the re-sult should be sparse, i.e., for-
Underfull \hbox (badness 10000) in paragraph at lines 877--882
\T1/ptm/m/n/10 mally in-her-it-ing from \T1/zi4/m/it/10 "[][]sparseMatrix[][][]
"\T1/ptm/m/n/10 . The de-fault, [][]\T1/zi4/m/it/10 NA[][][]\T1/ptm/m/n/10 , de
-
Underfull \hbox (badness 6675) in paragraph at lines 877--882
\T1/ptm/m/n/10 cides from the ``spar-sity'' of \T1/zi4/m/it/10 x \T1/ptm/m/n/10
 and \T1/zi4/m/it/10 y\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m
/n/10 code in
[2276] [2277]
Underfull \hbox (badness 10000) in paragraph at lines 1056--1058
[]\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n
/10 (or equiv-a-lently, \T1/zi4/m/it/10 to =
[2278] [2279]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.chol}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1168 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic
ate ignored
<to be read again> 
                   \relax 
l.1168 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  
Underfull \hbox (badness 1117) in paragraph at lines 1223--1229
\T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc
h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t
he same al-go-rithm
[2280] [2281] [2282]
Underfull \hbox (badness 2277) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
[2283] [2284]
Underfull \hbox (badness 1097) in paragraph at lines 1595--1598
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and
 \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 "
dgeMatrix"\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 1783) in paragraph at lines 1601--1605
[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
[2285]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1658 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.1658 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.1659 \aliasA{colMeans}{colSums}{colMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.1680 \aliasA{rowMeans}{colSums}{rowMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1691 \aliasA{rowSums}{colSums}{rowSums}
                                          [2286] [2287] [2288]
Underfull \hbox (badness 3547) in paragraph at lines 1910--1913
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2289] [2290] [2291] [2292] [2293]
Underfull \hbox (badness 1360) in paragraph at lines 2333--2337
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n
ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via
[2294] [2295] [2296] [2297]
Underfull \hbox (badness 2717) in paragraph at lines 2649--2653
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
[2298] [2299]
Underfull \hbox (badness 6842) in paragraph at lines 2739--2742
[]\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T
1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[]
[][] \T1/ptm/m/n/10 (with ``su-per-class''
[2300]
Underfull \hbox (badness 10000) in paragraph at lines 3026--3030
[]\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro
up meth-ods re-turn a
[2301] [2302] [2303]
Underfull \hbox (badness 1173) in paragraph at lines 3236--3238
[]\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t
his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and
Underfull \hbox (badness 10000) in paragraph at lines 3283--3285
[][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre
fer-able to (and more ef-fi-cient than)
[2304] [2305]
Underfull \hbox (badness 1354) in paragraph at lines 3482--3485
[]\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex
-plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in
-her-it-ing from
[2306] [2307] [2308] [2309] [2310]
Underfull \hbox (badness 6188) in paragraph at lines 3892--3895
[]\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 ,
 or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type =
Underfull \hbox (badness 5147) in paragraph at lines 3895--3898
[]\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 ,
 or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type =
[2311] [2312]
Underfull \hbox (badness 2318) in paragraph at lines 4010--4014
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C
lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi
4/m/it/10 "dMatrix"\T1/ptm/m/n/10 ,
[2313] [2314]
Underfull \hbox (badness 5245) in paragraph at lines 4146--4150
[]\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1
0 : the [][]\T1/zi4/m/it/10 determinant[][][](x)
[2315] [2316] [2317] [2318] [2319] [2320]
Overfull \hbox (23.27168pt too wide) in paragraph at lines 4563--4563
 []\T1/zi4/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe
ll-Boeing/counterx/counterx.html[] 
Overfull \hbox (8.27782pt too wide) in paragraph at lines 4570--4570
 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB
/Boeing/msc00726.tar.gz"))))[] 
[2321] [2322]
Underfull \hbox (badness 1931) in paragraph at lines 4802--4804
[]\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/
ptm/m/n/10 codes should be aligned, see
[2323] [2324] [2325] [2326] [2327]
Underfull \hbox (badness 1005) in paragraph at lines 5108--5113
[]\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA 
\T1/ptm/m/n/10 means no bor-der is drawn.
Underfull \hbox (badness 1655) in paragraph at lines 5108--5113
\T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4
/m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is
Underfull \hbox (badness 5862) in paragraph at lines 5127--5130
[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use
[2328]
Overfull \hbox (42.75635pt too wide) in paragraph at lines 5175--5175
 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
[2329]
Underfull \hbox (badness 3229) in paragraph at lines 5276--5285
[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within
 the
[2330]
Underfull \hbox (badness 10000) in paragraph at lines 5318--5320
[]\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot
her sig-na-tures (use
Underfull \hbox (badness 4995) in paragraph at lines 5323--5326
[]\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : 
a user con-ve-nience, to al-low
Underfull \hbox (badness 10000) in paragraph at lines 5333--5336
[]\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c
o-er-cion to a tra-di-tional
[2331] [2332] [2333] [2334] [2335]
Underfull \hbox (badness 1014) in paragraph at lines 5712--5715
[]\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10
 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10
 is a tri-an-gu-lar ma-trix. Anal-o-gously,
[2336] [2337] [2338] [2339]
Underfull \hbox (badness 10000) in paragraph at lines 6027--6030
[]\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2340]
Underfull \hbox (badness 2478) in paragraph at lines 6139--6144
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde
nseMatrix"\T1/ptm/m/n/10 . Class
[2341]
Underfull \hbox (badness 10000) in paragraph at lines 6147--6150
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2342]
Underfull \hbox (badness 10000) in paragraph at lines 6339--6342
[]\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2343]
Underfull \hbox (badness 10000) in paragraph at lines 6437--6440
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2344]
Underfull \hbox (badness 10000) in paragraph at lines 6512--6515
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2345]
Underfull \hbox (badness 2050) in paragraph at lines 6588--6591
[]\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth
-ods for dif-fer-ent types of ma-tri-ces. Use
[2346] [2347] [2348] [2349] [2350]
Underfull \hbox (badness 6268) in paragraph at lines 6901--6905
[]\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1
/ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1
0 . How-ever,
[2351]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7000 \aliasA{det}{Matrix-class}{det}
                                      
Underfull \hbox (badness 1527) in paragraph at lines 7093--7095
[]\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \
T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode
[2352]
Underfull \hbox (badness 4846) in paragraph at lines 7098--7101
[]\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1
/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing
Underfull \hbox (badness 10000) in paragraph at lines 7103--7106
[2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
cent.*.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7176 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.crossprod}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.7284 ...A{crossprod}{matrix-products}{crossprod}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.7383 ...tcrossprod}{matrix-products}{tcrossprod}
                                                   [2354]
Underfull \hbox (badness 10000) in paragraph at lines 7556--7561
[]\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot
her sig-na-tures (use
Underfull \hbox (badness 1448) in paragraph at lines 7556--7561
\T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m
ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of
Underfull \hbox (badness 10000) in paragraph at lines 7565--7567
[]\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r
e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an
Underfull \hbox (badness 10000) in paragraph at lines 7567--7569
[]\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r
e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an
Underfull \hbox (badness 1264) in paragraph at lines 7571--7572
[]\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot
her sig-na-tures, see
[2355] [2356]
Underfull \hbox (badness 1430) in paragraph at lines 7715--7720
[]\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio
n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1
/zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][]
\T1/ptm/m/n/10 , and
[2357]
Underfull \hbox (badness 10000) in paragraph at lines 7786--7789
[]\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2358]
Underfull \hbox (badness 10000) in paragraph at lines 7842--7844
[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/
ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X
[2359] [2360]
Underfull \vbox (badness 10000) has occurred while \output is active [2361]
Underfull \hbox (badness 2478) in paragraph at lines 8049--8054
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde
nseMatrix"\T1/ptm/m/n/10 . Class
Underfull \hbox (badness 10000) in paragraph at lines 8057--8060
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2362] [2363]
Underfull \hbox (badness 5924) in paragraph at lines 8251--8253
[]\T1/ptm/m/n/10 fast sim-ple meth-ods
[2364]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor
m}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8291 \HeaderA{norm}{Matrix Norms}{norm}
                                         pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.8291 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2365] [2366]
Underfull \hbox (badness 10000) in paragraph at lines 8564--8567
[]\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2367]
Underfull \hbox (badness 10000) in paragraph at lines 8654--8657
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2368]
Underfull \hbox (badness 10000) in paragraph at lines 8730--8733
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2369]
Underfull \vbox (badness 10000) has occurred while \output is active [2370]
Underfull \hbox (badness 10000) in paragraph at lines 8856--8858
[]\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe
r sig-na-tures (use
Underfull \hbox (badness 10000) in paragraph at lines 8861--8864
[]\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a 
user con-ve-nience, to al-low
[2371] [2372] [2373] [2374]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.qr}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9093 \aliasA{qr}{qr-methods}{qr}
                                   [2375] [2376] [2377] [2378]pdfTeX warning (e
xt4): destination with the same identifier (name{Rfn.rcond}) has been already u
sed, duplicate ignored
<to be read again> 
                   \relax 
l.9419 ... the Reciprocal Condition Number}{rcond}
                                                   [2379] [2380] [2381]
[2382] [2383]
Underfull \hbox (badness 2351) in paragraph at lines 9723--9731
[]\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment,
 via one di-men-sional
Underfull \hbox (badness 1852) in paragraph at lines 9723--9731
\T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][](
nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 
is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 ---
Underfull \hbox (badness 2343) in paragraph at lines 9723--9731
\T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls []
[]\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z
i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 ,
[2384] [2385] [2386] [2387]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.solve}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9998 \aliasA{solve}{solve-methods}{solve}
                                            [2388]
Underfull \hbox (badness 10000) in paragraph at lines 10161--10168
[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse =
[2389]
Underfull \hbox (badness 4403) in paragraph at lines 10222--10225
[]\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing 
\T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and
Underfull \hbox (badness 10000) in paragraph at lines 10292--10295
[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
[2390]
Underfull \hbox (badness 10000) in paragraph at lines 10328--10331
[]\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co
-er-ca-ble to)
Underfull \hbox (badness 10000) in paragraph at lines 10339--10343
[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
[2391] [2392] [2393] [2394] [2395] [2396] [2397] [2398]
Underfull \hbox (badness 10000) in paragraph at lines 10916--10924
[]\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn
s an ob-ject of S3 class
Underfull \hbox (badness 1796) in paragraph at lines 10916--10924
\T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z
i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x)
 \T1/ptm/m/n/10 (or just
Underfull \hbox (badness 10000) in paragraph at lines 10941--10949
[]\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 
: Co-er-cion of a fac-tor to
Underfull \hbox (badness 1112) in paragraph at lines 10941--10949
\T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca
-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class
[2399]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr.
Q}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11007 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
                                            [2400] [2401]
Underfull \hbox (badness 5036) in paragraph at lines 11193--11195
[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
[2402] [2403]
Underfull \hbox (badness 10000) in paragraph at lines 11400--11403
[]\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/
m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list
[2404]
Underfull \vbox (badness 10000) has occurred while \output is active [2405]
[2406] [2407]
Underfull \hbox (badness 10000) in paragraph at lines 11669--11674
[]\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/
it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be
[2408]
Underfull \hbox (badness 2057) in paragraph at lines 11749--11751
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2409] [2410]
Underfull \hbox (badness 10000) in paragraph at lines 11918--11923
[]\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z
i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[]
[][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for
Underfull \hbox (badness 1831) in paragraph at lines 11924--11930
[]\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1
/zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar
e de-fined
[2411]
Underfull \hbox (badness 1902) in paragraph at lines 11959--11963
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m
/it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] 
\T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a
nd other
[2412] [2413] [2414] [2415] [2416] [2417] [2418]
Underfull \hbox (badness 6910) in paragraph at lines 12558--12560
[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2419]
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12605.
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12605.
[2420] [2421]) (./boot-pkg.tex [2422]
Chapter 18.
[2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432]
Underfull \hbox (badness 1297) in paragraph at lines 799--809
[]\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce
sses, the de-fault be-haviour
[2433]
Underfull \hbox (badness 1881) in paragraph at lines 826--828
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2434]
Underfull \vbox (badness 10000) has occurred while \output is active [2435]
[2436]
Underfull \hbox (badness 10000) in paragraph at lines 1068--1072
[]\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i
n-ter-
Underfull \hbox (badness 10000) in paragraph at lines 1068--1072
\T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues
Underfull \hbox (badness 1859) in paragraph at lines 1068--1072
\T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply
 \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will
[2437]
Underfull \hbox (badness 2150) in paragraph at lines 1105--1111
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2438] [2439] [2440] [2441]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2442] [2443] [2444] [2445] [2446] [2447]
Underfull \hbox (badness 1005) in paragraph at lines 1800--1807
[]\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 "
ordinary" \T1/ptm/m/n/10 (case re-sam-pling),
[2448] [2449]
Underfull \vbox (badness 10000) has occurred while \output is active [2450]
Underfull \hbox (badness 7379) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2451] [2452] [2453] [2454]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2455]
Underfull \hbox (badness 1881) in paragraph at lines 2432--2434
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2456] [2457]
Underfull \hbox (badness 2970) in paragraph at lines 2536--2540
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i
t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t
he sam-ple
Underfull \hbox (badness 2310) in paragraph at lines 2536--2540
\T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it
/10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n
/10 is used. This is mul-ti-plied by
[2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468]
[2469] [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479]
[2480]
Underfull \hbox (badness 10000) in paragraph at lines 4190--4192
[]\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault 
is
[2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2492] [2493] [2494] [2495]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2496] [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] [2506]
Underfull \hbox (badness 4954) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa
ddle.distn"\T1/ptm/m/n/10 . See the help file for
[2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525])
(./class-pkg.tex [2526]
Chapter 19.
[2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536] [2537]
[2538] [2539] [2540] [2541] [2542]) (./cluster-pkg.tex
Chapter 20.
[2543] [2544] [2545] [2546] [2547]
Underfull \vbox (badness 7777) has occurred while \output is active [2548]
[2549] [2550] [2551] [2552]
Underfull \hbox (badness 4144) in paragraph at lines 691--694
[]\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem
-ory (and hence time), but dis-ables
[2553] [2554]
Underfull \hbox (badness 1412) in paragraph at lines 783--788
[]\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/
ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K
amil Ko-zlowski
[2555]
Underfull \hbox (badness 10000) in paragraph at lines 881--883
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2556] [2557]
Underfull \hbox (badness 10000) in paragraph at lines 992--994
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
Underfull \hbox (badness 1342) in paragraph at lines 1006--1010
[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2558] [2559] [2560]
Underfull \hbox (badness 6110) in paragraph at lines 1207--1211
[]\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/
m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne
nt, e.g., for
[2561] [2562] [2563]
Underfull \hbox (badness 10000) in paragraph at lines 1476--1479
[2564] [2565]
Underfull \hbox (badness 2503) in paragraph at lines 1588--1591
[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or
 \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of
[2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573]
Underfull \hbox (badness 10000) in paragraph at lines 2182--2185
Underfull \hbox (badness 10000) in paragraph at lines 2196--2202
[][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the 
[][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell
ipsoid \T1/ptm/m/n/10 ob-jects.
[2574] [2575] [2576] [2577]
Underfull \hbox (badness 6675) in paragraph at lines 2431--2433
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
[2578] [2579] [2580] [2581] [2582] [2583] [2584]
Underfull \hbox (badness 2980) in paragraph at lines 2961--2965
[][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc
es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl
ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 ,
[2585] [2586] [2587] [2588] [2589] [2590]
Underfull \hbox (badness 1142) in paragraph at lines 3302--3305
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2591] [2592]
Underfull \hbox (badness 1142) in paragraph at lines 3421--3424
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2593] [2594] [2595]
Underfull \hbox (badness 2582) in paragraph at lines 3644--3649
[][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi
4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p
tm/m/n/10 ,
[2596]
Underfull \hbox (badness 3209) in paragraph at lines 3706--3711
[]\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi
4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which
Underfull \hbox (badness 8019) in paragraph at lines 3706--3711
\T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/
m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx
[2597] [2598] [2599] [2600] [2601]
Underfull \hbox (badness 10000) in paragraph at lines 3998--4000
[]\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T
1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for
[2602] [2603] [2604] [2605]
Underfull \hbox (badness 2626) in paragraph at lines 4227--4232
[]\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/
n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col =
[2606]
Underfull \hbox (badness 1383) in paragraph at lines 4305--4310
[]\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m
/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T
1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial)
[2607] [2608] [2609] [2610] [2611] [2612] [2613]
Underfull \hbox (badness 10000) in paragraph at lines 4748--4750
[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side
[2614] [2615]) (./codetools-pkg.tex [2616]
Chapter 21.
[2617] [2618] [2619] [2620] [2621]) (./foreign-pkg.tex [2622]
Chapter 22.
[2623]
Underfull \hbox (badness 10000) in paragraph at lines 78--80
[]\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : /
 / waikato . github . io / weka-[]wiki / formats _ and _
[2624] [2625] [2626] [2627] [2628] [2629] [2630]
Underfull \hbox (badness 10000) in paragraph at lines 505--514
[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-
Underfull \hbox (badness 10000) in paragraph at lines 505--514
\T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de
-fault), the first orig-i-nal value
Underfull \hbox (badness 10000) in paragraph at lines 505--514
\T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named 
to
Underfull \hbox (badness 7133) in paragraph at lines 550--558
[]\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / 
en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][]
[2631]
Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624
 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2632] [2633] [2634]
Underfull \hbox (badness 10000) in paragraph at lines 812--813
[2635] [2636] [2637]
Underfull \hbox (badness 10000) in paragraph at lines 990--992
[]\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : /
 / waikato . github . io / weka-[]wiki / formats _ and _
[2638] [2639] [2640] [2641]
Underfull \hbox (badness 10000) in paragraph at lines 1270--1276
[]\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign
:::writeForeignStata\T1/ptm/m/n/10 ,
[2642] [2643]) (./lattice-pkg.tex [2644]
Chapter 23.
[2645]
Underfull \hbox (badness 1484) in paragraph at lines 117--121
[]\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li
n-ing the use of Trel-lis graph-ics;
Underfull \hbox (badness 10000) in paragraph at lines 117--121
\T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / 
departments / sia / project / trellis /
[2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656]
[2657] [2658] [2659] [2660]
Underfull \hbox (badness 1062) in paragraph at lines 1398--1402
\T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta
-tion for
[2661]
Underfull \vbox (badness 4416) has occurred while \output is active [2662]
Underfull \hbox (badness 1803) in paragraph at lines 1566--1583
[][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack-
age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 1566--1583
[][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p
anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/it/10 strip.default[][][]\T1/ptm/m/n/10 ,
[2663] [2664] [2665]
Underfull \hbox (badness 3009) in paragraph at lines 1725--1727
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][
][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1755--1759
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2666] [2667] [2668] [2669] [2670]
Underfull \hbox (badness 10000) in paragraph at lines 2141--2144
[]\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, 
the value of
[2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680]
Underfull \hbox (badness 2781) in paragraph at lines 2849--2851
[]\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col.
regions \T1/ptm/m/n/10 ar-gu-ment in
[2681] [2682]
Underfull \hbox (badness 2486) in paragraph at lines 3001--3005
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2683] [2684] [2685] [2686] [2687] [2688]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.parallel}) has been already used, duplicate ign
ored
<to be read again> 
                   \relax 
l.3475 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2689] [2690] [2691] [2692]
[2693] [2694] [2695] [2696]
Underfull \hbox (badness 5696) in paragraph at lines 3970--3974
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings
Underfull \hbox (badness 10000) in paragraph at lines 3970--3974
\T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme =
 "col.whitebg")\T1/ptm/m/n/10 .
Underfull \hbox (badness 2435) in paragraph at lines 3970--3974
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2697]
Underfull \hbox (badness 1173) in paragraph at lines 4109--4113
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
[2698]
Underfull \hbox (badness 3219) in paragraph at lines 4136--4138
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
[2699] [2700]
Underfull \hbox (badness 3492) in paragraph at lines 4336--4346
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 
is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 ,
[2701]
Underfull \hbox (badness 10000) in paragraph at lines 4361--4364
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo
t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4364--4366
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p
lot.polygon \T1/ptm/m/n/10 and
[2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710]
Underfull \hbox (badness 6157) in paragraph at lines 5087--5090
[]\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles
 via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and
[2711] [2712] [2713] [2714] [2715] [2716] [2717]
Underfull \hbox (badness 10000) in paragraph at lines 5545--5548
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 5592) in paragraph at lines 5545--5548
\T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le
ft of pan-els us-ing
[2718] [2719] [2720] [2721] [2722]
Underfull \hbox (badness 4805) in paragraph at lines 5907--5911
[]\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should 
be high-
Underfull \hbox (badness 10000) in paragraph at lines 5918--5925
[]\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t
ra pa-ram-e-ters are passed on to
Underfull \hbox (badness 1226) in paragraph at lines 5918--5925
\T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi
fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as
Underfull \hbox (badness 2418) in paragraph at lines 5918--5925
\T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z
i4/m/it/10 trellis.focus
Underfull \hbox (badness 10000) in paragraph at lines 5918--5925
\T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar
e used (in com-bi-na-tion with
Underfull \hbox (badness 1259) in paragraph at lines 5918--5925
[][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th
e cho-sen view-port if so re-quested.
[2723] [2724] [2725] [2726]
Underfull \hbox (badness 4242) in paragraph at lines 6218--6223
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
Underfull \hbox (badness 2529) in paragraph at lines 6218--6223
\T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there
 is no group-ing vari-able, oth-er-wise
[2727] [2728]
Underfull \hbox (badness 2310) in paragraph at lines 6334--6339
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/
10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round
 if
[2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739]
Underfull \hbox (badness 3168) in paragraph at lines 7116--7120
\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U
se
[2740] [2741] [2742] [2743]
Underfull \hbox (badness 2012) in paragraph at lines 7387--7390
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2744] [2745]
Underfull \hbox (badness 3333) in paragraph at lines 7559--7561
[]\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol
 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing
[2746] [2747] [2748]
Underfull \vbox (badness 10000) has occurred while \output is active [2749]
[2750] [2751]
Underfull \hbox (badness 1436) in paragraph at lines 7973--7979
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
[2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759]
Underfull \hbox (badness 10000) in paragraph at lines 8531--8534
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp
ose \T1/ptm/m/n/10 from
[2760]
Underfull \hbox (badness 1092) in paragraph at lines 8577--8579
[]\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 <Deepayan.Sarkar@R-project.org
> \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally
 con-
[2761] [2762]
Underfull \hbox (badness 3895) in paragraph at lines 8738--8741
[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T
1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2763]
Underfull \hbox (badness 1515) in paragraph at lines 8814--8818
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2764] [2765]
Underfull \hbox (badness 6316) in paragraph at lines 8920--8925
[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
Underfull \hbox (badness 5908) in paragraph at lines 8937--8940
[]\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c
omponents.default \T1/ptm/m/n/10 and
[2766] [2767] [2768] [2769]
Overfull \hbox (5.28876pt too wide) in paragraph at lines 9228--9232
[]\T1/ptm/m/n/10 Returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4
/m/it/10 left,right,left.name,right.name,condition
[2770] [2771] [2772] [2773] [2774] [2775] [2776]
Underfull \hbox (badness 2310) in paragraph at lines 9692--9696
[]\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 ,
 \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m
/n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p
tm/m/n/10 ,
Underfull \hbox (badness 3701) in paragraph at lines 9697--9700
[]\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m
/n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa
rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 ,
[2777] [2778] [2779]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.melanoma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9923 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                [2780] [2781] [2782]
Underfull \hbox (badness 4144) in paragraph at lines 10147--10150
[]\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R
u-ral and Ur-ban Mor-tal-
Underfull \hbox (badness 1509) in paragraph at lines 10147--10150
\T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it
/10 https : / / ruralhealth . und . edu / projects /
[2783] [2784]) (./mgcv-pkg.tex
Chapter 24.
[2785] [2786] [2787]
Underfull \hbox (badness 1142) in paragraph at lines 184--188
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 209--214
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2788] [2789] [2790] [2791]
Underfull \hbox (badness 10000) in paragraph at lines 378--385
[][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m
gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/
n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 smooth.terms[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 7168) in paragraph at lines 378--385
[][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m
/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][]
[]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z
i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][]
\T1/ptm/m/n/10 ,
[2792] [2793] [2794] [2795] [2796]
Underfull \hbox (badness 1406) in paragraph at lines 703--704
[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2797] [2798] [2799]
Underfull \hbox (badness 1158) in paragraph at lines 813--815
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
Underfull \hbox (badness 1259) in paragraph at lines 876--877
[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
[2800] [2801] [2802] [2803] [2804]
Underfull \hbox (badness 1281) in paragraph at lines 1160--1161
[]\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n
/10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt
m/m/n/10 resid-u-als can be ex-tracted. See Klein amd
[2805] [2806]
Underfull \vbox (badness 10000) has occurred while \output is active [2807]
Underfull \vbox (badness 10000) has occurred while \output is active [2808]
[2809]
Underfull \vbox (badness 10000) has occurred while \output is active [2810]
[2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821]
[2822] [2823] [2824] [2825]
Underfull \hbox (badness 1142) in paragraph at lines 2361--2365
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 2387--2392
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2826] [2827] [2828] [2829] [2830] [2831]
Underfull \vbox (badness 10000) has occurred while \output is active [2832]
Underfull \vbox (badness 10000) has occurred while \output is active [2833]
[2834] [2835] [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844]
[2845] [2846] [2847] [2848] [2849]
Underfull \hbox (badness 10000) in paragraph at lines 3822--3826
[]\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/
n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see
[2850] [2851]
Underfull \vbox (badness 10000) has occurred while \output is active [2852]
[2853] [2854]
Underfull \hbox (badness 1184) in paragraph at lines 4108--4112
[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
[2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] [2863] [2864] [2865]
[2866]
Underfull \hbox (badness 1142) in paragraph at lines 4829--4833
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2867]
Underfull \hbox (badness 1231) in paragraph at lines 4933--4935
[]\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since
 it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with
[2868] [2869] [2870]
Underfull \vbox (badness 10000) has occurred while \output is active [2871]
[2872] [2873] [2874]
Underfull \hbox (badness 2181) in paragraph at lines 5377--5378
[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2875] [2876] [2877] [2878] [2879] [2880] [2881]
Underfull \hbox (badness 10000) in paragraph at lines 5766--5767
[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(...
,fit=FALSE) \T1/ptm/m/n/10 or
[2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892]
Underfull \hbox (badness 1142) in paragraph at lines 6351--6355
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2893] [2894] [2895]
Underfull \vbox (badness 10000) has occurred while \output is active [2896]
[2897] [2898] [2899]
Underfull \hbox (badness 1087) in paragraph at lines 6723--6724
[]\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet
a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas
e, and if
[2900] [2901]
Underfull \vbox (badness 10000) has occurred while \output is active [2902]
Underfull \vbox (badness 10000) has occurred while \output is active [2903]
[2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914]
[2915]
Underfull \hbox (badness 1242) in paragraph at lines 7672--7673
[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926]
Underfull \hbox (badness 6001) in paragraph at lines 8312--8314
[]\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 <simon.wood@r-project.org> \T1/p
tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's
[2927] [2928] [2929] [2930] [2931] [2932] [2933] [2934] [2935] [2936]
Underfull \vbox (badness 10000) has occurred while \output is active [2937]
[2938]
Underfull \hbox (badness 1038) in paragraph at lines 9061--9064
[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim.
pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9061--9064
\T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId
not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 ,
[2939]
Underfull \hbox (badness 10000) in paragraph at lines 9117--9120
[]\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z
i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 ,
[2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950]
Underfull \hbox (badness 1852) in paragraph at lines 9790--9793
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and
[2951] [2952] [2953]
Underfull \hbox (badness 1852) in paragraph at lines 9959--9962
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and
[2954] [2955]
Underfull \vbox (badness 10000) has occurred while \output is active [2956]
[2957]
Underfull \hbox (badness 1205) in paragraph at lines 10191--10193
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10191--10193
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 10197--10202
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2958]
Underfull \hbox (badness 1205) in paragraph at lines 10281--10283
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10281--10283
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[2959] [2960] [2961]
Underfull \hbox (badness 1253) in paragraph at lines 10480--10482
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[2962] [2963] [2964] [2965] [2966] [2967]
Underfull \hbox (badness 4792) in paragraph at lines 10741--10744
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/
10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m
/n/10 can be used:
Underfull \hbox (badness 10000) in paragraph at lines 10741--10744
\T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo
th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[2968]
Underfull \hbox (badness 10000) in paragraph at lines 10848--10851
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1
0 "deviance"\T1/ptm/m/n/10 ,
[2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] [2978] [2979]
[2980] [2981]
Underfull \vbox (badness 10000) has occurred while \output is active [2982]
Underfull \hbox (badness 3861) in paragraph at lines 11637--11640
[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
[2983] [2984]
Underfull \hbox (badness 1320) in paragraph at lines 11752--11757
\T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T
1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If
 ma-
[2985]
Underfull \hbox (badness 1975) in paragraph at lines 11858--11863
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2986] [2987]
Underfull \hbox (badness 1762) in paragraph at lines 11947--11959
\T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T
1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr
es-sion splines with
[2988] [2989] [2990]
Underfull \hbox (badness 7667) in paragraph at lines 12159--12165
[][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one
 or two vari-ables, spec-i-fied via terms like
[2991]
Underfull \hbox (badness 10000) in paragraph at lines 12200--12201
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2992] [2993] [2994] [2995]
Underfull \vbox (badness 10000) has occurred while \output is active [2996]
Underfull \hbox (badness 10000) in paragraph at lines 12477--12479
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2997] [2998]
Underfull \hbox (badness 10000) in paragraph at lines 12607--12608
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2999] [3000] [3001]
Underfull \hbox (badness 1436) in paragraph at lines 12745--12752
\T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i
) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one
[3002] [3003]
Underfull \hbox (badness 10000) in paragraph at lines 12840--12841
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011] [3012] [3013]
Underfull \hbox (badness 10000) in paragraph at lines 13441--13447
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 1292) in paragraph at lines 13441--13447
\T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T
1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note
[3014] [3015] [3016]
Underfull \vbox (badness 10000) has occurred while \output is active [3017]
Underfull \vbox (badness 10000) has occurred while \output is active [3018]
[3019]
Underfull \hbox (badness 10000) in paragraph at lines 13784--13785
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3020] [3021] [3022] [3023]
Underfull \hbox (badness 3895) in paragraph at lines 14044--14047
[][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any
 num-ber of vari-ables, spec-i-fied via terms like
[3024]
Underfull \hbox (badness 10000) in paragraph at lines 14089--14091
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3025] [3026] [3027] [3028] [3029]
Underfull \hbox (badness 1371) in paragraph at lines 14363--14369
[]\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive
 smooths are avail-able (see
Underfull \hbox (badness 10000) in paragraph at lines 14403--14407
[][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/
zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre
ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n
/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14403--14407
[][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de
fined.smooth[][][]\T1/ptm/m/n/10 ,
Overfull \hbox (46.8009pt too wide) in paragraph at lines 14403--14407
[][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4
/m/it/10 factor.smooth.interaction[][][] 
[3030] [3031] [3032] [3033]
Underfull \hbox (badness 2326) in paragraph at lines 14608--14615
[]\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied
 us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and
[3034]
Underfull \hbox (badness 2158) in paragraph at lines 14693--14693
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045]
[3046] [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056]
[3057] [3058] [3059] [3060] [3061] [3062]
Underfull \hbox (badness 1796) in paragraph at lines 16345--16348
[]\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/
it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar
[3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071]) (./nlme-pkg.tex
[3072]
Chapter 25.
[3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083]
[3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094]
[3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102]
Underfull \hbox (badness 2875) in paragraph at lines 1996--2002
[]\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat-
ing a co-vari-ate
Underfull \hbox (badness 1466) in paragraph at lines 1996--2002
\T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1
0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 ,
[3103] [3104] [3105] [3106]
Underfull \hbox (badness 10000) in paragraph at lines 2258--2264
[][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi
alize.corStruct[][][]\T1/ptm/m/n/10 ,
[3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117]
[3118] [3119] [3120] [3121pdfTeX warning (ext4): destination with the same iden
tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor
ed
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  
l.3194 
       ] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130]
[3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139]
Underfull \hbox (badness 1067) in paragraph at lines 4419--4424
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150]
[3151]
Underfull \hbox (badness 10000) in paragraph at lines 5165--5169
[][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/
m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo
variate.varFunc[][][]\T1/ptm/m/n/10 ,
[3152] [3153] [3154] [3155] [3156] [3157] [3158]
Underfull \hbox (badness 10000) in paragraph at lines 5597--5600
[][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 
,
[3159] [3160] [3161] [3162] [3163] [3164] [3165]
Underfull \hbox (badness 10000) in paragraph at lines 5978--5983
[][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou
psFormula.lme[][][]\T1/ptm/m/n/10 ,
[3166] [3167] [3168] [3169]
Underfull \hbox (badness 1490) in paragraph at lines 6248--6259
[][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC
ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.
gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 ,
[3170]
Underfull \hbox (badness 10000) in paragraph at lines 6312--6314
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3171] [3172] [3173] [3174] [3175] [3176]
Underfull \hbox (badness 10000) in paragraph at lines 6726--6728
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3177] [3178] [3179] [3180]
Underfull \hbox (badness 10000) in paragraph at lines 6999--7006
[][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n
/10 ,
[3181] [3182] [3183] [3184]
Underfull \hbox (badness 10000) in paragraph at lines 7259--7264
[][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize
.glsStruct[][][]\T1/ptm/m/n/10 ,
[3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195]
[3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203]
Underfull \hbox (badness 10000) in paragraph at lines 8527--8529
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3204]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig
ma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8578 \aliasA{sigma}{lmeObject}{sigma}
                                        [3205] [3206] [3207] [3208]
Underfull \hbox (badness 10000) in paragraph at lines 8808--8815
[][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi
st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/
10 ,
[3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216]
Underfull \hbox (badness 10000) in paragraph at lines 9330--9337
[][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik
.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm
/m/n/10 ,
[3217] [3218] [3219] [3220] [3221]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [3222] [3223] [3224]
[3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233]
Underfull \hbox (badness 1596) in paragraph at lines 10465--10491
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3234] [3235]
Underfull \hbox (badness 1490) in paragraph at lines 10603--10609
[][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm
e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm
eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10
 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 ,
[3236] [3237] [3238] [3239]
Underfull \hbox (badness 10000) in paragraph at lines 10844--10846
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250]
[3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261]
[3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] [3270] [3271] [3272]
[3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281]
Underfull \hbox (badness 1286) in paragraph at lines 13742--13749
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it
/10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or
[3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289]
Underfull \hbox (badness 1215) in paragraph at lines 14288--14290
[]\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis.
 De-faults to
[3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300]
[3301] [3302]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.random.effects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15185 ...Extract Random Effects}{random.effects}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.random.effects.1}) has been already us
ed, duplicate ignored
<to be read again> 
                   \relax 
l.15185 ...Extract Random Effects}{random.effects}
                                                   [3303] [3304] [3305]
[3306] [3307] [3308] [3309] [3310] [3311] [3312]
Underfull \hbox (badness 3884) in paragraph at lines 15825--15829
[]\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199
7). Phar-ma-coki-
Underfull \hbox (badness 4846) in paragraph at lines 15825--15829
\T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap
-pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol-
Underfull \hbox (badness 1953) in paragraph at lines 15825--15829
\T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/
it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 /
 35925 /
[3313] [3314]
Underfull \hbox (badness 1067) in paragraph at lines 15937--15942
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[3315] [3316] [3317] [3318]
Underfull \hbox (badness 1448) in paragraph at lines 16180--16189
\T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for 
the "raw" resid-u-als (ob-served - fit-ted),
[3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328]
Underfull \hbox (badness 1728) in paragraph at lines 16885--16888
[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
[3329] [3330] [3331] [3332] [3333]
Underfull \hbox (badness 8056) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/
m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of
Underfull \hbox (badness 10000) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/
m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural
Underfull \hbox (badness 5756) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for
[3334] [3335] [3336] [3337] [3338]
Underfull \hbox (badness 10000) in paragraph at lines 17542--17550
[][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons
tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi
xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , []
[]\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 ,
[3339] [3340] [3341] [3342] [3343] [3344] [3345] [3346] [3347] [3348]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18262
[][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1
0 ,
Underfull \hbox (badness 10000) in paragraph at lines 18252--18262
[][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it
/10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa
ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10
 ,
[3349] [3350] [3351] [3352] [3353]
Underfull \hbox (badness 5036) in paragraph at lines 18576--18585
[][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari
ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/
m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 ,
[3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364]
[3365] [3366]) (./nnet-pkg.tex
Chapter 26.
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.multinom.1}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                   [3367]
Underfull \hbox (badness 1117) in paragraph at lines 79--88
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[3368] [3369] [3370] [3371] [3372] [3373] [3374]) (./rpart-pkg.tex
Chapter 27.
[3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385]
[3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396]
[3397] [3398] [3399] [3400] [3401] [3402] [3403]) (./spatial-pkg.tex [3404]
Chapter 28.
[3405] [3406] [3407] [3408] [3409] [3410]
Underfull \hbox (badness 10000) in paragraph at lines 423--427
[3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] [3421]
[3422] [3423]) (./survival-pkg.tex [3424]
Chapter 29.
[3425] [3426] [3427] [3428]
Underfull \hbox (badness 6412) in paragraph at lines 282--284
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3429] [3430]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.aml}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.382 ... Myelogenous Leukemia survival data}{aml}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.382 ... Myelogenous Leukemia survival data}{aml}
                                                   [3431] [3432] [3433]
[3434]
Overfull \vbox (3.85637pt too high) has occurred while \output is active
[3435] [3436] [3437] [3438] [3439] [3440] [3441]
Underfull \hbox (badness 1097) in paragraph at lines 1106--1108
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
[3442] [3443] [3444]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.colon}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1308 ...erapy for Stage B/C colon cancer}{colon}
                                                   [3445]
Underfull \hbox (badness 10000) in paragraph at lines 1356--1360
[]\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea
led by
[3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453]
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
\T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
\T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S
urv(time,status) ~ age +
Underfull \hbox (badness 2119) in paragraph at lines 1940--1955
\T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i
s un-nec-es-sary: ar-gu-ments within the
[3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464]
[3465] [3466] [3467] [3468] [3469]
Overfull \vbox (31.18587pt too high) has occurred while \output is active
[3470] [3471] [3472]
Underfull \hbox (badness 1389) in paragraph at lines 3300--3302
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
[3473] [3474] [3475] [3476]
Overfull \hbox (467.89665pt too wide) in alignment at lines 3586--3586
 [] [] 
Underfull \vbox (badness 10000) has occurred while \output is active [3477]
Overfull \vbox (8.56093pt too high) has occurred while \output is active
[3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] [3488]
[3489] [3490] [3491]
Overfull \vbox (11.01616pt too high) has occurred while \output is active
[3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502]
Underfull \hbox (badness 5274) in paragraph at lines 5316--5318
[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m
/n/10 , which is the re-sult of the
[3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513]
[3514] [3515] [3516] [3517] [3518] [3519]
Underfull \hbox (badness 1281) in paragraph at lines 6540--6543
[]\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response
"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d
fbeta"\T1/ptm/m/n/10 ,
[3520] [3521] [3522] [3523] [3524] [3525] [3526] [3527]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.solder}) has been already used, d
uplicate ignored
<to be read again> 
                   \relax 
l.7092 ...ata from a soldering experiment}{solder}
                                                   [3528] [3529] [3530]
[3531] [3532] [3533] [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541]
[3542] [3543] [3544] [3545] [3546]
Underfull \hbox (badness 10000) in paragraph at lines 8422--8431
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the
 form
[3547] [3548]
Underfull \hbox (badness 1038) in paragraph at lines 8578--8584
\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d
icted sur-vival
[3549] [3550] [3551] [3552] [3553]
Underfull \hbox (badness 10000) in paragraph at lines 8941--8946
[][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 ,
[3554] [3555] [3556] [3557] [3558] [3559] [3560] [3561] [3562] [3563] [3564]
[3565]
Underfull \hbox (badness 1354) in paragraph at lines 9860--9864
[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3566] [3567] [3568] [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576]
[3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587]
[3588] [3589]) [3590] (./fullrefman.ind [3591] [3592] [3593] [3594] [3595]
[3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606]
[3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615]
Overfull \hbox (8.3567pt too wide) in paragraph at lines 2607--2609
[]| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
[3616] [3617] [3618] [3619] [3620] [3621]
Overfull \hbox (8.3567pt too wide) in paragraph at lines 3242--3244
[]| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
[3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4503--4505
[]\T1/zi4/m/it/10 [,CsparseMatrix,index,index,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4505--4507
[]\T1/zi4/m/it/10 [,CsparseMatrix,index,missing,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4507--4509
[]\T1/zi4/m/it/10 [,CsparseMatrix,missing,index,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4517--4519
[]\T1/zi4/m/it/10 [,Matrix,lMatrix,missing,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4521--4523
[]\T1/zi4/m/it/10 [,Matrix,logical,missing,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4525--4527
[]\T1/zi4/m/it/10 [,Matrix,matrix,missing,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4531--4533
[]\T1/zi4/m/it/10 [,Matrix,missing,missing,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4533--4535
[]\T1/zi4/m/it/10 [,Matrix,missing,missing,missing-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4535--4537
[]\T1/zi4/m/it/10 [,TsparseMatrix,index,index,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4537--4539
[]\T1/zi4/m/it/10 [,TsparseMatrix,index,missing,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4539--4541
[]\T1/zi4/m/it/10 [,TsparseMatrix,missing,index,logical-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4547--4549
[]\T1/zi4/m/it/10 [,denseMatrix,index,index,logical-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4549--4551
[]\T1/zi4/m/it/10 [,denseMatrix,index,missing,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4551--4553
[]\T1/zi4/m/it/10 [,denseMatrix,matrix,missing,ANY-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4553--4555
[]\T1/zi4/m/it/10 [,denseMatrix,matrix,missing,missing-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4555--4557
[]\T1/zi4/m/it/10 [,denseMatrix,missing,index,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4557--4559
[]\T1/zi4/m/it/10 [,diagonalMatrix,index,index,logical-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 4559--4561
[]\T1/zi4/m/it/10 [,diagonalMatrix,index,missing,logical-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 4561--4563
[]\T1/zi4/m/it/10 [,diagonalMatrix,missing,index,logical-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4563--4565
[]\T1/zi4/m/it/10 [,indMatrix,index,missing,logical-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 4565--4567
[]\T1/zi4/m/it/10 [,sparseMatrix,index,index,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4567--4569
[]\T1/zi4/m/it/10 [,sparseMatrix,index,missing,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4569--4571
[]\T1/zi4/m/it/10 [,sparseMatrix,missing,index,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4573--4575
[]\T1/zi4/m/it/10 [,sparseVector,lsparseVector,ANY,ANY-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4575--4577
[]\T1/zi4/m/it/10 [,sparseVector,nsparseVector,ANY,ANY-method 
[3632]
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4651--4653
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,Matrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4653--4655
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,index,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4655--4657
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,index,sparseVector-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4657--4659
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,missing,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4659--4661
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,missing,sparseVector-method 
Overfull \hbox (85.8567pt too wide) in paragraph at lines 4661--4663
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,ldenseMatrix,missing,replValue-method 
Overfull \hbox (90.8567pt too wide) in paragraph at lines 4663--4665
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,lsparseMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4665--4667
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4667--4669
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,missing,index,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4669--4671
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,missing,index,sparseVector-method 
Overfull \hbox (85.8567pt too wide) in paragraph at lines 4671--4673
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,ndenseMatrix,missing,replValue-method 
Overfull \hbox (90.8567pt too wide) in paragraph at lines 4673--4675
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,nsparseMatrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4685--4687
[]\T1/zi4/m/it/10 [<-,Matrix,ldenseMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4687--4689
[]\T1/zi4/m/it/10 [<-,Matrix,lsparseMatrix,missing,replValue-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4689--4691
[]\T1/zi4/m/it/10 [<-,Matrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4695--4697
[]\T1/zi4/m/it/10 [<-,Matrix,ndenseMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4697--4699
[]\T1/zi4/m/it/10 [<-,Matrix,nsparseMatrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4699--4701
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,index,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4701--4703
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,index,sparseVector-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4703--4705
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,missing,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4705--4707
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,missing,sparseVector-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4707--4709
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4709--4711
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,missing,index,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4711--4713
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,missing,index,sparseVector-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4713--4715
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,Matrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4715--4717
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,index,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4717--4719
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,index,sparseVector-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4719--4721
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,missing,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4721--4723
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,missing,sparseVector-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4723--4725
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,lMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4725--4727
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4727--4729
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,missing,index,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4729--4731
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,missing,index,sparseVector-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4731--4733
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,nMatrix,missing,replValue-method 
[3633]
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4733--4735
[]\T1/zi4/m/it/10 [<-,denseMatrix,index,index,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4735--4737
[]\T1/zi4/m/it/10 [<-,denseMatrix,index,missing,replValue-method 
Overfull \hbox (45.8567pt too wide) in paragraph at lines 4737--4739
[]\T1/zi4/m/it/10 [<-,denseMatrix,matrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4739--4741
[]\T1/zi4/m/it/10 [<-,denseMatrix,missing,index,replValue-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4741--4743
[]\T1/zi4/m/it/10 [<-,denseMatrix,missing,missing,ANY-method 
Overfull \hbox (45.8567pt too wide) in paragraph at lines 4743--4745
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,index,replValue-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4745--4747
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,index,sparseMatrix-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4747--4749
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,index,sparseVector-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4749--4751
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,missing,replValue-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4751--4753
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,missing,sparseMatrix-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4753--4755
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,missing,sparseVector-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4755--4757
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,matrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4757--4759
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,index,replValue-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4759--4761
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,index,sparseMatrix-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4761--4763
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,index,sparseVector-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 4763--4765
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,missing,ANY-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4767--4769
[]\T1/zi4/m/it/10 [<-,indMatrix,missing,index,ANY-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4769--4771
[]\T1/zi4/m/it/10 [<-,indMatrix,missing,missing,ANY-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4771--4773
[]\T1/zi4/m/it/10 [<-,sparseMatrix,ANY,ANY,sparseMatrix-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4773--4775
[]\T1/zi4/m/it/10 [<-,sparseMatrix,ANY,missing,sparseMatrix-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4775--4777
[]\T1/zi4/m/it/10 [<-,sparseMatrix,missing,ANY,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4777--4779
[]\T1/zi4/m/it/10 [<-,sparseMatrix,missing,missing,ANY-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4779--4781
[]\T1/zi4/m/it/10 [<-,sparseVector,index,missing,replValueSp-method 
Overfull \hbox (90.8567pt too wide) in paragraph at lines 4781--4783
[]\T1/zi4/m/it/10 [<-,sparseVector,sparseVector,missing,replValueSp-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4863--4865
[]\T1/zi4/m/it/10 %*%,CsparseMatrix,CsparseMatrix-method 
[3634]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4867--4869
[]\T1/zi4/m/it/10 %*%,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4889--4891
[]\T1/zi4/m/it/10 %*%,TsparseMatrix,TsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4927--4929
[]\T1/zi4/m/it/10 %*%,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4933--4935
[]\T1/zi4/m/it/10 %*%,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4939--4941
[]\T1/zi4/m/it/10 %*%,diagonalMatrix,sparseMatrix-method 
[3635]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4995--4997
[]\T1/zi4/m/it/10 %*%,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5045--5047
[]\T1/zi4/m/it/10 %*%,nsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5061--5063
[]\T1/zi4/m/it/10 %*%,sparseMatrix,diagonalMatrix-method 
[3636]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5119--5121
[]\T1/zi4/m/it/10 %&%,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5125--5127
[]\T1/zi4/m/it/10 %&%,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5127--5129
[]\T1/zi4/m/it/10 %&%,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5131--5133
[]\T1/zi4/m/it/10 %&%,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5145--5147
[]\T1/zi4/m/it/10 %&%,nCsparseMatrix,nCsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5147--5149
[]\T1/zi4/m/it/10 %&%,nCsparseMatrix,nsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5155--5157
[]\T1/zi4/m/it/10 %&%,nsparseMatrix,nCsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5159--5161
[]\T1/zi4/m/it/10 %&%,nsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5163--5165
[]\T1/zi4/m/it/10 %&%,sparseMatrix,diagonalMatrix-method 
[3637]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 5346--5348
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3638]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5511--5513
[]\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5513--5515
[]\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5517--5519
[]\T1/zi4/m/it/10 all.equal,sparseVector,sparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5519--5521
[]\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method 
[3639] [3640]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5780--5782
[]\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5784--5786
[]\T1/zi4/m/it/10 Arith,ddenseMatrix,ddenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5790--5792
[]\T1/zi4/m/it/10 Arith,ddenseMatrix,sparseVector-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5826--5828
[]\T1/zi4/m/it/10 Arith,dsparseVector,dsparseVector-method 
[3641]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5904--5906
[]\T1/zi4/m/it/10 Arith,sparseVector,ddenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5908--5910
[]\T1/zi4/m/it/10 Arith,sparseVector,sparseVector-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 5910--5912
[]\T1/zi4/m/it/10 Arith,triangularMatrix,diagonalMatrix-method 
[3642] [3643] [3644]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 6567--6569
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3645] [3646] [3647]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 7233--7235
[]\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 7235--7237
[]\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 7265--7267
[]\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 7267--7269
[]\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 7273--7275
[]\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method 
[3648] [3649] [3650] [3651]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8029--8031
[]\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8031--8033
[]\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8041--8043
[]\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8045--8047
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8049--8051
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8051--8053
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8053--8055
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8055--8057
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8059--8061
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8061--8063
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,sparseVector-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 8063--8065
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,symmetricMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8065--8067
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,TsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8085--8087
[]\T1/zi4/m/it/10 coerce,ddiMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8087--8089
[]\T1/zi4/m/it/10 coerce,ddiMatrix,triangularMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8091--8093
[]\T1/zi4/m/it/10 coerce,denseMatrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8093--8095
[]\T1/zi4/m/it/10 coerce,denseMatrix,generalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8095--8097
[]\T1/zi4/m/it/10 coerce,denseMatrix,RsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8097--8099
[]\T1/zi4/m/it/10 coerce,denseMatrix,sparseMatrix-method 
[3652]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8099--8101
[]\T1/zi4/m/it/10 coerce,denseMatrix,symmetricMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8101--8103
[]\T1/zi4/m/it/10 coerce,denseMatrix,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8139--8141
[]\T1/zi4/m/it/10 coerce,dgeMatrix,triangularMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8159--8161
[]\T1/zi4/m/it/10 coerce,dgTMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8161--8163
[]\T1/zi4/m/it/10 coerce,dgTMatrix,triangularMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8163--8165
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,denseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 8165--8167
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,generalMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 8171--8173
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,nsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8173--8175
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method 
[3653]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8221--8223
[]\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method 
[3654]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8373--8375
[]\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8375--8377
[]\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8407--8409
[]\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method 
[3655]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8421--8423
[]\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8423--8425
[]\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8449--8451
[]\T1/zi4/m/it/10 coerce,lsparseMatrix,dsparseMatrix-method 
[3656] [3657]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8635--8637
[]\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8643--8645
[]\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8645--8647
[]\T1/zi4/m/it/10 coerce,matrix.csc,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8651--8653
[]\T1/zi4/m/it/10 coerce,matrix.csc,TsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8653--8655
[]\T1/zi4/m/it/10 coerce,matrix.csr,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8661--8663
[]\T1/zi4/m/it/10 coerce,matrix.csr,RsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8663--8665
[]\T1/zi4/m/it/10 coerce,matrix.csr,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8665--8667
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8667--8669
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8671--8673
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,nsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8673--8675
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8675--8677
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8715--8717
[]\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method 
[3658]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8739--8741
[]\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8741--8743
[]\T1/zi4/m/it/10 coerce,ngTMatrix,triangularMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8773--8775
[]\T1/zi4/m/it/10 coerce,nsparseMatrix,dsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8775--8777
[]\T1/zi4/m/it/10 coerce,nsparseVector,dsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8777--8779
[]\T1/zi4/m/it/10 coerce,nsparseVector,isparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8779--8781
[]\T1/zi4/m/it/10 coerce,nsparseVector,lsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8781--8783
[]\T1/zi4/m/it/10 coerce,nsparseVector,zsparseVector-method 
[3659]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8899--8901
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8901--8903
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8907--8909
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,dsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8909--8911
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,generalMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8913--8915
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,lsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8919--8921
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,nsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8921--8923
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8927--8929
[]\T1/zi4/m/it/10 coerce,sparseMatrix,generalMatrix-method 
[3660]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8937--8939
[]\T1/zi4/m/it/10 coerce,sparseMatrix,RsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8939--8941
[]\T1/zi4/m/it/10 coerce,sparseMatrix,sparseVector-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 8941--8943
[]\T1/zi4/m/it/10 coerce,sparseMatrix,symmetricMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 8943--8945
[]\T1/zi4/m/it/10 coerce,sparseMatrix,triangularMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8945--8947
[]\T1/zi4/m/it/10 coerce,sparseVector,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8955--8957
[]\T1/zi4/m/it/10 coerce,sparseVector,sparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8957--8959
[]\T1/zi4/m/it/10 coerce,sparseVector,TsparseMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 8963--8965
[]\T1/zi4/m/it/10 coerce,triangularMatrix,symmetricMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8965--8967
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,CsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8971--8973
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,lsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8977--8979
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,nsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8979--8981
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,sparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8981--8983
[]\T1/zi4/m/it/10 coerce,xsparseVector,dsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8983--8985
[]\T1/zi4/m/it/10 coerce,xsparseVector,isparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8985--8987
[]\T1/zi4/m/it/10 coerce,xsparseVector,lsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8987--8989
[]\T1/zi4/m/it/10 coerce,xsparseVector,nsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8989--8991
[]\T1/zi4/m/it/10 coerce,xsparseVector,zsparseVector-method 
[3661]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9127--9129
[]\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9145--9147
[]\T1/zi4/m/it/10 Compare,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 9161--9163
[]\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method 
[3662] [3663] [3664]
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9689--9691
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9691--9693
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,ddenseMatrix-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 9693--9695
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9697--9699
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9699--9701
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,numLike-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9701--9703
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,CsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9703--9705
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,ddenseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9705--9707
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,dgCMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9707--9709
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,dsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9709--9711
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,ldenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9715--9717
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,ndenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 9721--9723
[]\T1/zi4/m/it/10 crossprod,dgeMatrix,dsparseMatrix-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 9729--9731
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 9731--9733
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,dgeMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 9733--9735
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 9735--9737
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,lgeMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9737--9739
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9739--9741
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9741--9743
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9743--9745
[]\T1/zi4/m/it/10 crossprod,dsparseMatrix,ddenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 9745--9747
[]\T1/zi4/m/it/10 crossprod,dsparseMatrix,dgeMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9747--9749
[]\T1/zi4/m/it/10 crossprod,dtpMatrix,ddenseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9751--9753
[]\T1/zi4/m/it/10 crossprod,dtrMatrix,ddenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9767--9769
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,ddenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9769--9771
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,ldenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9771--9773
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,lsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9777--9779
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,ndenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9783--9785
[]\T1/zi4/m/it/10 crossprod,lsparseMatrix,ldenseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9785--9787
[]\T1/zi4/m/it/10 crossprod,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9787--9789
[]\T1/zi4/m/it/10 crossprod,lsparseMatrix,missing-method 
[3665]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9797--9799
[]\T1/zi4/m/it/10 crossprod,matrix,diagonalMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9815--9817
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,ddenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9817--9819
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,ldenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9823--9825
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,ndenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9825--9827
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9831--9833
[]\T1/zi4/m/it/10 crossprod,nsparseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9833--9835
[]\T1/zi4/m/it/10 crossprod,nsparseMatrix,ndenseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9835--9837
[]\T1/zi4/m/it/10 crossprod,nsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9839--9841
[]\T1/zi4/m/it/10 crossprod,numLike,CsparseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9855--9857
[]\T1/zi4/m/it/10 crossprod,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9863--9865
[]\T1/zi4/m/it/10 crossprod,sparseVector,sparseVector-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9867--9869
[]\T1/zi4/m/it/10 crossprod,symmetricMatrix,Matrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 9869--9871
[]\T1/zi4/m/it/10 crossprod,symmetricMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9875--9877
[]\T1/zi4/m/it/10 crossprod,TsparseMatrix,missing-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9877--9879
[]\T1/zi4/m/it/10 crossprod,TsparseMatrix,TsparseMatrix-method 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9911--9913
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3666]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9972--9974
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9977--9979
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9985--9987
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3667]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10326--10328
[]\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10328--10330
[]\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 10336--10338
[]\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 10350--10352
[]\T1/zi4/m/it/10 determinant,dsparseMatrix,logical-method 
[3668]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10370--10372
[]\T1/zi4/m/it/10 determinant,sparseMatrix,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10372--10374
[]\T1/zi4/m/it/10 determinant,sparseMatrix,missing-method 
[3669] [3670] [3671]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 11102--11104
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3672] [3673]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 11620--11622
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3674] [3675]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11964--11966
[]\T1/zi4/m/it/10 forceSymmetric,corMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11966--11968
[]\T1/zi4/m/it/10 forceSymmetric,corMatrix,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11968--11970
[]\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,ANY-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 11970--11972
[]\T1/zi4/m/it/10 forceSymmetric,denseMatrix,character-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11972--11974
[]\T1/zi4/m/it/10 forceSymmetric,denseMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11974--11976
[]\T1/zi4/m/it/10 forceSymmetric,dpoMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11976--11978
[]\T1/zi4/m/it/10 forceSymmetric,dpoMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11978--11980
[]\T1/zi4/m/it/10 forceSymmetric,dppMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11980--11982
[]\T1/zi4/m/it/10 forceSymmetric,dppMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11982--11984
[]\T1/zi4/m/it/10 forceSymmetric,dsCMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11984--11986
[]\T1/zi4/m/it/10 forceSymmetric,dsCMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11986--11988
[]\T1/zi4/m/it/10 forceSymmetric,dspMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11988--11990
[]\T1/zi4/m/it/10 forceSymmetric,dspMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11990--11992
[]\T1/zi4/m/it/10 forceSymmetric,dsRMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11992--11994
[]\T1/zi4/m/it/10 forceSymmetric,dsRMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11994--11996
[]\T1/zi4/m/it/10 forceSymmetric,dsTMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11996--11998
[]\T1/zi4/m/it/10 forceSymmetric,dsTMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11998--12000
[]\T1/zi4/m/it/10 forceSymmetric,dsyMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12000--12002
[]\T1/zi4/m/it/10 forceSymmetric,dsyMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12002--12004
[]\T1/zi4/m/it/10 forceSymmetric,lsCMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12004--12006
[]\T1/zi4/m/it/10 forceSymmetric,lsCMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12006--12008
[]\T1/zi4/m/it/10 forceSymmetric,lspMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12008--12010
[]\T1/zi4/m/it/10 forceSymmetric,lspMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12010--12012
[]\T1/zi4/m/it/10 forceSymmetric,lsRMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12012--12014
[]\T1/zi4/m/it/10 forceSymmetric,lsRMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12014--12016
[]\T1/zi4/m/it/10 forceSymmetric,lsTMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12016--12018
[]\T1/zi4/m/it/10 forceSymmetric,lsTMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12018--12020
[]\T1/zi4/m/it/10 forceSymmetric,lsyMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12020--12022
[]\T1/zi4/m/it/10 forceSymmetric,lsyMatrix,missing-method 
[3676]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12026--12028
[]\T1/zi4/m/it/10 forceSymmetric,nsCMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12028--12030
[]\T1/zi4/m/it/10 forceSymmetric,nsCMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12030--12032
[]\T1/zi4/m/it/10 forceSymmetric,nspMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12032--12034
[]\T1/zi4/m/it/10 forceSymmetric,nspMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12034--12036
[]\T1/zi4/m/it/10 forceSymmetric,nsRMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12036--12038
[]\T1/zi4/m/it/10 forceSymmetric,nsRMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12038--12040
[]\T1/zi4/m/it/10 forceSymmetric,nsTMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12040--12042
[]\T1/zi4/m/it/10 forceSymmetric,nsTMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12042--12044
[]\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12044--12046
[]\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 12046--12048
[]\T1/zi4/m/it/10 forceSymmetric,sparseMatrix,ANY-method 
[3677] [3678] [3679]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 12981--12983
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3680] [3681] [3682] [3683] [3684] [3685] [3686] [3687]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 14517--14519
[]\T1/zi4/m/it/10 kronecker,diagonalMatrix,Matrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 14519--14521
[]\T1/zi4/m/it/10 kronecker,dsparseMatrix,dsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 14529--14531
[]\T1/zi4/m/it/10 kronecker,Matrix,diagonalMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 14533--14535
[]\T1/zi4/m/it/10 kronecker,sparseMatrix,TsparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 14535--14537
[]\T1/zi4/m/it/10 kronecker,TsparseMatrix,sparseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 14537--14539
[]\T1/zi4/m/it/10 kronecker,TsparseMatrix,TsparseMatrix-method 
[3688] [3689] [3690]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15350--15352
[]\T1/zi4/m/it/10 Logic,CsparseMatrix,CsparseMatrix-method 
[3691]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 15358--15360
[]\T1/zi4/m/it/10 Logic,ldenseMatrix,lsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 15382--15384
[]\T1/zi4/m/it/10 Logic,lsparseMatrix,ldenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15384--15386
[]\T1/zi4/m/it/10 Logic,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15386--15388
[]\T1/zi4/m/it/10 Logic,lsparseVector,lsparseVector-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15408--15410
[]\T1/zi4/m/it/10 Logic,nsparseVector,nsparseVector-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 15422--15424
[]\T1/zi4/m/it/10 Logic,sparseVector,sparseVector-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 15424--15426
[]\T1/zi4/m/it/10 Logic,triangularMatrix,diagonalMatrix-method 
[3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 17360--17362
[]\T1/zi4/m/it/10 Ops,diagonalMatrix,diagonalMatrix-method 
[3700]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17362--17364
[]\T1/zi4/m/it/10 Ops,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 17364--17366
[]\T1/zi4/m/it/10 Ops,diagonalMatrix,triangularMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17384--17386
[]\T1/zi4/m/it/10 Ops,dsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17422--17424
[]\T1/zi4/m/it/10 Ops,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17424--17426
[]\T1/zi4/m/it/10 Ops,lsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17456--17458
[]\T1/zi4/m/it/10 Ops,nsparseMatrix,dsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17458--17460
[]\T1/zi4/m/it/10 Ops,nsparseMatrix,lsparseMatrix-method 
[3701]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17482--17484
[]\T1/zi4/m/it/10 Ops,sparseMatrix,diagonalMatrix-method 
[3702]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 17703--17705
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (33.3567pt too wide) in paragraph at lines 17729--17731
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 
[3703] [3704] [3705] [3706] [3707]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19035--19037
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19042--19044
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19044--19046
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19046--19048
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (20.01662pt too wide) in paragraph at lines 19048--19050
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1
0 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19052--19054
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.re.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (20.01662pt too wide) in paragraph at lines 19058--19060
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1
0 )\T1/ptm/m/n/10 , 
[3708] [3709] [3710] [3711] [3712]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 19970--19972
[]\T1/zi4/m/it/10 qr.fitted,sparseQR,ddenseMatrix-method 
[3713]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 20141--20143
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 
[3714]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 20371--20373
[]\T1/zi4/m/it/10 rbind2,denseMatrix,sparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 20373--20375
[]\T1/zi4/m/it/10 rbind2,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 20405--20407
[]\T1/zi4/m/it/10 rbind2,sparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 20407--20409
[]\T1/zi4/m/it/10 rbind2,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 20413--20415
[]\T1/zi4/m/it/10 rbind2,sparseMatrix,sparseMatrix-method 
[3715] [3716] [3717] [3718] [3719] [3720] [3721] [3722] [3723]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22143--22145
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22145--22147
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22148--22150
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22163--22165
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22169--22171
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22177--22179
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3724] [3725]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 22397--22399
[]\T1/zi4/m/it/10 solve,MatrixFactorization,missing-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 22399--22401
[]\T1/zi4/m/it/10 solve,MatrixFactorization,numeric-method 
Overfull \hbox (20.01662pt too wide) in paragraph at lines 22559--22561
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1
0 )\T1/ptm/m/n/10 , 
[3726] [3727]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23002--23004
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23004--23006
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23006--23008
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[3728] [3729] [3730] [3731] [3732]
Overfull \hbox (35.8567pt too wide) in paragraph at lines 23898--23900
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 23900--23902
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,ddenseMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 23902--23904
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23904--23906
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,matrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23906--23908
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23908--23910
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,numLike-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 23910--23912
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,CsparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23912--23914
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,ddenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23914--23916
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,dsCMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23916--23918
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,dtrMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23918--23920
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,ldenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23920--23922
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,lsCMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23924--23926
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23926--23928
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,ndenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23928--23930
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,nsCMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 23932--23934
[]\T1/zi4/m/it/10 tcrossprod,dgeMatrix,diagonalMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 23940--23942
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (45.8567pt too wide) in paragraph at lines 23942--23944
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23944--23946
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,matrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23946--23948
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,missing-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 23948--23950
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23956--23958
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,ddenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23958--23960
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,ldenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23962--23964
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23964--23966
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,ndenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 23968--23970
[]\T1/zi4/m/it/10 tcrossprod,lgeMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23972--23974
[]\T1/zi4/m/it/10 tcrossprod,lsparseMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23976--23978
[]\T1/zi4/m/it/10 tcrossprod,matrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23980--23982
[]\T1/zi4/m/it/10 tcrossprod,matrix,diagonalMatrix-method 
[3733]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 24008--24010
[]\T1/zi4/m/it/10 tcrossprod,Matrix,symmetricMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24010--24012
[]\T1/zi4/m/it/10 tcrossprod,Matrix,TsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24012--24014
[]\T1/zi4/m/it/10 tcrossprod,mMatrix,sparseVector-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24014--24016
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,ddenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24016--24018
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,ldenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24020--24022
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24022--24024
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,ndenseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 24028--24030
[]\T1/zi4/m/it/10 tcrossprod,nsparseMatrix,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 24030--24032
[]\T1/zi4/m/it/10 tcrossprod,numLike,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24036--24038
[]\T1/zi4/m/it/10 tcrossprod,numLike,sparseVector-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 24042--24044
[]\T1/zi4/m/it/10 tcrossprod,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24044--24046
[]\T1/zi4/m/it/10 tcrossprod,sparseMatrix,sparseVector-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24046--24048
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24048--24050
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,mMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24050--24052
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,numLike-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24052--24054
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24054--24056
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,sparseVector-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24058--24060
[]\T1/zi4/m/it/10 tcrossprod,TsparseMatrix,Matrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 24060--24062
[]\T1/zi4/m/it/10 tcrossprod,TsparseMatrix,missing-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 24062--24064
[]\T1/zi4/m/it/10 tcrossprod,TsparseMatrix,TsparseMatrix-method 
[3734] [3735] [3736] [3737] [3738] [3739]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 25411--25413
[]\T1/zi4/m/it/10 updown,character,mMatrix,CHMfactor-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 25413--25415
[]\T1/zi4/m/it/10 updown,logical,mMatrix,CHMfactor-method 
[3740] [3741] [3742] [3743] [3744]) (./fullrefman.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
Package rerunfilecheck Warning: File `fullrefman.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.
 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.tree} has been referenced but does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Sobj.Rul.SpatialGrid} has been referenced but d
oes not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Rgshhs} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dnearneigh} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.as.Rul.dsTMatrix.Rul.listw} has been referenced
 but does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.similar.listw} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.nb2listw} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.read.gal} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.matrix.csr} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.SparseM.ontology} has been referenced but does 
not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.modelMatrix} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.model.Matrix} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.nearcor} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.posdefify} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.summary\\unhbox\040\\voidb@x\040\\kern\040\\z@\
040\\char\040`\\protect\040\\protect\040\\leavevmode@ifvmode\040\\kern\040+.166
67em\\relax\040sparseMatrix.Rdash.method} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.get.adjacency} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.graph.adjacency} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.graph} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.sqrtm} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.logm} has been referenced but does not exist, r
eplaced by a fixed one
pdfTeX warning (dest): name{Rfn.showClass} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.loglm1} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one
pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one
{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/share/tex
live/texmf-dist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist
/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/
lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/cm-super/cm-super-
ts1.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{
/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/sha
re/texlive/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4b.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4r.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/lm/lmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/lm/lmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi5.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/lm/lmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/lm/lmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy
5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy7.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/cm-super/sftt0900.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/cm-super/sftt1000.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts
/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/time
s/utmbi8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (3795 pages, 10523676 bytes).
Transcript written on fullrefman.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-05-07>
(/usr/share/texlive/texmf-dist/tex/latex/base/book.cls
Document Class: book 2020/04/10 v1.4m Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo))
(../../share/texmf/tex/latex/Rd.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)
(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe)
(/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex
(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex)))))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)
(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
(/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
(/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref)                setting the option has no effect on input line 377.
Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref)                setting the option has no effect on input line 377.
) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)))
(/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)
Writing index file fullrefman.idx
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)
(./fullrefman.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
(./fullrefman.out) (./fullrefman.out)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texliv
e/texmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont ca
n be used only with embedded Type1 fonts
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplri' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rpxpplro' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxphvro' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicat
es ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmri' already exists, duplica
tes ignored
pdfTeX warning: /usr/bin/pdflatex (file /usr/share/texlive/texmf-var/fonts/map/
pdftex/updmap/pdftex.map): fontmap entry for `rtxptmro' already exists, duplica
tes ignored
}] (./fullrefman.toc
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
[20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34]
[35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49])
[50] [1] [2] (./base-pkg.tex
Chapter 1.
[3] [4]
Underfull \hbox (badness 6995) in paragraph at lines 143--151
[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt
m/m/n/10 if \T1/zi4/m/n/10 double.base
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/zi4/m/n/10 (double.base
Underfull \hbox (badness 10000) in paragraph at lines 143--151
\T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m
/n/10 1.110223e-16\T1/ptm/m/n/10 . As
Underfull \hbox (badness 4995) in paragraph at lines 143--151
\T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi
4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 ,
[5]
Underfull \hbox (badness 10000) in paragraph at lines 212--217
[]\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/
ptm/m/n/10 is true, there are 10 such
Underfull \hbox (badness 1675) in paragraph at lines 212--217
\T1/zi4/m/n/10 "longdouble.<kind>" \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T
1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor-
[6] [7]
Underfull \hbox (badness 1178) in paragraph at lines 322--325
[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[8] [9] [10]
Underfull \hbox (badness 2556) in paragraph at lines 561--567
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[11] [12] [13] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[14] [15] [16] [17] [18] [19] [20] [21] [22]
(/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25]
Underfull \hbox (badness 10000) in paragraph at lines 1567--1573
[26] [27] [28] [29] [30] [31]
Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[32] [33] [34] [35] [36] [37] [38]
Underfull \hbox (badness 10000) in paragraph at lines 2492--2494
[]\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci
ently) by
Underfull \hbox (badness 10000) in paragraph at lines 2495--2500
[][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le
ngth re-sults, so at-tempt-ing to split via
Underfull \hbox (badness 1102) in paragraph at lines 2495--2500
\T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim
-ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51]
Underfull \vbox (badness 10000) has occurred while \output is active [52]
[53] [54] [55] [56] [57] [58]
Underfull \hbox (badness 10000) in paragraph at lines 3890--3892
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
[59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73]
[74] [75] [76]
Underfull \hbox (badness 2521) in paragraph at lines 5180--5182
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91]
[92] [93]
Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371
 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex
_)), is.na(Im(NA_complex_)))[] 
[94] [95] [96] [97] [98] [99]
Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult","internal","wininet","libcurl")\T1/ptm/m/n/10 :
[100] [101] [102]
Underfull \hbox (badness 10000) in paragraph at lines 7020--7023
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[103] [104]
Underfull \hbox (badness 6063) in paragraph at lines 7202--7208
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
Underfull \hbox (badness 2343) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files
 and web-pages gen-er-
Underfull \hbox (badness 1708) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i
s not rec-om-mended) when
Underfull \hbox (badness 1831) in paragraph at lines 7202--7208
\T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n
/10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or
[105]
Underfull \hbox (badness 1303) in paragraph at lines 7264--7271
[]\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio
n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. 
This reads the
Underfull \hbox (badness 2111) in paragraph at lines 7275--7280
[]\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to
 one of the X11 se-lec-tions may be able to do so via
[106] [107]
Underfull \vbox (badness 10000) has occurred while \output is active [108]
[109] [110]
Underfull \hbox (badness 1077) in paragraph at lines 7593--7599
[]\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T
1/ptm/m/n/10 . Con-di-tions of length greater
Underfull \hbox (badness 1231) in paragraph at lines 7593--7599
\T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the 
first el-e-
[111] [112] [113] [114] [115]
Underfull \hbox (badness 2096) in paragraph at lines 7948--7952
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[116] [117]
Underfull \hbox (badness 2351) in paragraph at lines 8062--8065
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
[118] [119] [120] [121] [122]
Underfull \hbox (badness 4479) in paragraph at lines 8388--8399
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),
[123] [124] [125] [126] [127]
Underfull \hbox (badness 1629) in paragraph at lines 8839--8851
[]\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a
re ig-nored, and real times
Underfull \hbox (badness 1609) in paragraph at lines 8839--8851
\T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/
10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which
Underfull \hbox (badness 2426) in paragraph at lines 8839--8851
\T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that 
value is on those OSes also used as an er-ror code.
[128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138]
Underfull \hbox (badness 1178) in paragraph at lines 9596--9600
[]\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato
mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][
]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de-
[139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150]
[151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
Underfull \hbox (badness 6396) in paragraph at lines 11228--11236
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
Underfull \hbox (badness 1946) in paragraph at lines 11228--11236
\T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al-
ized'' short-cut for
[162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173]
[174] [175] [176]
Underfull \hbox (badness 4569) in paragraph at lines 12377--12381
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment
Underfull \hbox (badness 2401) in paragraph at lines 12377--12381
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188]
[189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200]
Underfull \hbox (badness 2253) in paragraph at lines 14062--14064
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[201]
Underfull \hbox (badness 1565) in paragraph at lines 14138--14142
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[202]
Underfull \hbox (badness 4927) in paragraph at lines 14182--14184
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4
/m/n/10 fsep =
[203]
Underfull \hbox (badness 3148) in paragraph at lines 14284--14289
[][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4
/m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m
/n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider
[204]
Underfull \hbox (badness 1466) in paragraph at lines 14331--14334
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[205] [206]
Underfull \hbox (badness 10000) in paragraph at lines 14458--14462
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14469--14472
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[207] [208] [209] [210]
Underfull \hbox (badness 3965) in paragraph at lines 14766--14770
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222]
Underfull \hbox (badness 4429) in paragraph at lines 15546--15549
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[223]
Underfull \hbox (badness 10000) in paragraph at lines 15652--15654
[]\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic
h calls
Underfull \hbox (badness 1215) in paragraph at lines 15652--15654
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times
 in this case, see
Underfull \hbox (badness 10000) in paragraph at lines 15674--15679
[]\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T
1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls
Underfull \hbox (badness 1558) in paragraph at lines 15674--15679
\T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m
/it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m
/n/10 is not
Underfull \hbox (badness 10000) in paragraph at lines 15686--15690
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
Underfull \hbox (badness 2426) in paragraph at lines 15686--15690
\T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi
ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want
[224]
Underfull \hbox (badness 2035) in paragraph at lines 15725--15729
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use within
[225]
Underfull \vbox (badness 10000) has occurred while \output is active [226]
[227] [228] [229] [230] [231] [232] [233]
Underfull \hbox (badness 2452) in paragraph at lines 16338--16342
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-
Underfull \hbox (badness 1147) in paragraph at lines 16338--16342
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[234] [235] [236]
Underfull \hbox (badness 1092) in paragraph at lines 16511--16516
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[237] [238] [239]
Underfull \hbox (badness 6741) in paragraph at lines 16764--16768
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[240] [241] [242] [243] [244] [245] [246] [247] [248]
Underfull \vbox (badness 10000) has occurred while \output is active [249]
[250] [251] [252] [253] [254] [255] [256] [257] [258]
Underfull \hbox (badness 1478) in paragraph at lines 18113--18116
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[259] [260] [261]
Underfull \hbox (badness 10000) in paragraph at lines 18381--18383
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww
w . unicode . org / reports / tr35 /
[262] [263] [264] [265] [266] [267] [268] [269] [270]
Underfull \hbox (badness 1442) in paragraph at lines 18980--18982
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[271] [272] [273] [274] [275]
Underfull \hbox (badness 10000) in paragraph at lines 19311--19317
[276] [277] [278]
Underfull \hbox (badness 1248) in paragraph at lines 19556--19559
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[279] [280] [281] [282]
Underfull \hbox (badness 4739) in paragraph at lines 19819--19821
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[283] [284] [285] [286]
Underfull \hbox (badness 1603) in paragraph at lines 20046--20049
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[287] [288] [289]
Underfull \hbox (badness 1596) in paragraph at lines 20273--20278
\T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an
 ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm
/m/n/10 .
[290] [291] [292] [293] [294] [295] [296] [297] [298] [299]
Underfull \hbox (badness 2469) in paragraph at lines 20878--20883
[]\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l
a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/
n/10 and
[300]
Underfull \hbox (badness 10000) in paragraph at lines 20972--20976
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory
[301] [302]
Underfull \hbox (badness 1014) in paragraph at lines 21142--21147
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[303] [304] [305] [306] [307] [308] [309] [310] [311] [312] [313] [314]
Underfull \hbox (badness 1264) in paragraph at lines 21991--21996
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[315]
Underfull \hbox (badness 4441) in paragraph at lines 22020--22023
[]\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/
m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z
i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 ,
[316] [317] [318] [319] [320] [321] [322] [323] [324] [325]
Underfull \hbox (badness 6047) in paragraph at lines 22794--22796
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) ==
[326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337]
[338] [339] [340] [341] [342]
Underfull \hbox (badness 10000) in paragraph at lines 23874--23880
[][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m
/n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$
\T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 23874--23880
[][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm
/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/
10 and [][]$\T1/zi4/m/n/10 https :
[343] [344] [345] [346] [347] [348] [349] [350]
Underfull \hbox (badness 2790) in paragraph at lines 24375--24378
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by
Underfull \hbox (badness 1571) in paragraph at lines 24375--24378
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[351] [352] [353]
Underfull \hbox (badness 1194) in paragraph at lines 24664--24667
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[354] [355] [356]
Underfull \hbox (badness 2368) in paragraph at lines 24871--24877
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing list, i.e.,
Underfull \hbox (badness 4981) in paragraph at lines 24871--24877
\T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al
so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names =
[357] [358] [359] [360] [361] [362]
Underfull \hbox (badness 10000) in paragraph at lines 25256--25259
[]\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even-
tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by
[363] [364] [365] [366] [367] [368] [369] [370] [371]
Underfull \hbox (badness 10000) in paragraph at lines 25876--25878
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in%
[372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382] [383]
Underfull \hbox (badness 1038) in paragraph at lines 26737--26745
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially
Underfull \hbox (badness 1735) in paragraph at lines 26737--26745
\T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_
DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un-
Underfull \hbox (badness 1292) in paragraph at lines 26737--26745
\T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics
","stats","methods")\T1/ptm/m/n/10 . (Set
Underfull \hbox (badness 1881) in paragraph at lines 26746--26749
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are
Underfull \hbox (badness 6220) in paragraph at lines 26770--26772
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see
[384] [385]
Underfull \hbox (badness 2142) in paragraph at lines 26911--26915
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able
Underfull \hbox (badness 1968) in paragraph at lines 26968--26973
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able
[386] [387] [388]
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/
ptm/m/n/10 ' or the Eu-ro-pean mir-ror
Underfull \hbox (badness 10000) in paragraph at lines 27262--27268
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\
T1/ptm/m/n/10 '. Can be set by
Underfull \hbox (badness 10000) in paragraph at lines 27275--27278
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[389]
Underfull \hbox (badness 2689) in paragraph at lines 27301--27303
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
Underfull \hbox (badness 10000) in paragraph at lines 27336--27341
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly
Underfull \hbox (badness 2529) in paragraph at lines 27342--27353
\T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n
/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si-
Underfull \hbox (badness 2512) in paragraph at lines 27342--27353
\T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m
/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and
Underfull \hbox (badness 7203) in paragraph at lines 27354--27357
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and
[390] [391] [392] [393] [394] [395] [396] [397]
Underfull \hbox (badness 10000) in paragraph at lines 27901--27904
[]\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s
) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of
[398]
Underfull \hbox (badness 7925) in paragraph at lines 27982--27986
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to
r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n
/10 cor-re-sponds to
Underfull \hbox (badness 1622) in paragraph at lines 27982--27986
[][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic
h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\
T1/zi4/m/n/10 class[][][]
Underfull \hbox (badness 6125) in paragraph at lines 27987--27996
[]\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string
 \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor
-re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text =
[399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410]
[411] [412]
Underfull \hbox (badness 2726) in paragraph at lines 28935--28938
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423]
Underfull \hbox (badness 1603) in paragraph at lines 29685--29688
[]\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w
ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https :
 / / www .
[424] [425] [426] [427] [428] [429]
Underfull \vbox (badness 10000) has occurred while \output is active [430]
[431] [432] [433] [434] [435] [436] [437]
Underfull \hbox (badness 1533) in paragraph at lines 30713--30716
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[438] [439]
Underfull \hbox (badness 1163) in paragraph at lines 30876--30887
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450]
Underfull \vbox (badness 10000) has occurred while \output is active [451]
[452] [453] [454] [455] [456] [457] [458] [459] [460] [461] [462] [463]
Underfull \hbox (badness 10000) in paragraph at lines 32539--32543
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,
Underfull \hbox (badness 1221) in paragraph at lines 32539--32543
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.
[464]
Underfull \hbox (badness 3557) in paragraph at lines 32560--32562
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /
Underfull \hbox (badness 1122) in paragraph at lines 32563--32567
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/
10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht
tps : / / www . pcre . org /
[465] [466] [467] [468] [469] [470] [471] [472]
Underfull \hbox (badness 1655) in paragraph at lines 33157--33159
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484]
[485] [486] [487] [488] [489] [490]
Underfull \hbox (badness 2261) in paragraph at lines 34349--34354
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
Underfull \hbox (badness 10000) in paragraph at lines 34376--34382
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
Underfull \hbox (badness 1484) in paragraph at lines 34376--34382
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal 
and hex-adec-i-mal rep-re-sen-ta-tions like
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526]
[527]
Underfull \hbox (badness 10000) in paragraph at lines 36987--36989
[][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919
799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for
[528] [529] [530] [531] [532] [533] [534] [535]
Underfull \hbox (badness 1072) in paragraph at lines 37584--37588
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by
Underfull \hbox (badness 10000) in paragraph at lines 37589--37593
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
Underfull \hbox (badness 10000) in paragraph at lines 37619--37625
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '
Underfull \hbox (badness 10000) in paragraph at lines 37619--37625
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,
Underfull \hbox (badness 1320) in paragraph at lines 37619--37625
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in
Underfull \hbox (badness 3009) in paragraph at lines 37634--37641
[]\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is 
also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt
m/m/n/10 ' which is read
Underfull \hbox (badness 1038) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron-
ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the
Underfull \hbox (badness 2573) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment
Underfull \hbox (badness 1917) in paragraph at lines 37634--37641
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[536] [537] [538] [539]
Underfull \hbox (badness 2644) in paragraph at lines 37866--37870
[]\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an
[540] [541]
Underfull \hbox (badness 1142) in paragraph at lines 38018--38024
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d
[542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553]
[554] [555] [556] [557] [558] [559]
Underfull \hbox (badness 1565) in paragraph at lines 39297--39299
[]\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t
ype) \T1/ptm/m/n/10 for the de-fault
[560] [561] [562] [563] [564] [565] [566] [567] [568]
Underfull \hbox (badness 1137) in paragraph at lines 39887--39893
[]\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild
-cards in file paths. For pre-cise de-tails
Underfull \hbox (badness 4967) in paragraph at lines 39906--39911
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[569] [570]
Underfull \hbox (badness 1616) in paragraph at lines 40026--40031
\T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes
, pro-vided only the POSIX op-tions
[571] [572] [573] [574] [575] [576] [577] [578]
Underfull \hbox (badness 1472) in paragraph at lines 40568--40571
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[579] [580] [581] [582] [583] [584] [585] [586] [587] [588] [589] [590]
[591]
Underfull \hbox (badness 10000) in paragraph at lines 41487--41491
[]\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav
e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10
 length(bin) >
[592] [593] [594] [595]
Underfull \hbox (badness 10000) in paragraph at lines 41738--41741
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$https : / / developer . r-[]project . org /
[596] [597] [598]
Underfull \hbox (badness 10000) in paragraph at lines 41922--41926
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer .
[599] [600] [601] [602] [603] [604] [605] [606]
Underfull \hbox (badness 10000) in paragraph at lines 42547--42550
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[
]zones /
[607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618]
[619]
Underfull \hbox (badness 1990) in paragraph at lines 43469--43477
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If
Underfull \hbox (badness 4846) in paragraph at lines 43469--43477
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[620] [621] [622] [623] [624] [625] [626] [627]
Underfull \hbox (badness 1917) in paragraph at lines 43975--43982
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[628] [629] [630] [631] [632] [633]
Underfull \hbox (badness 2452) in paragraph at lines 44428--44434
[][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 ,
[634] [635] [636] [637] [638] [639]
Underfull \hbox (badness 3668) in paragraph at lines 44802--44804
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[640]
Underfull \hbox (badness 2401) in paragraph at lines 44932--44936
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[641] [642] [643]
Underfull \hbox (badness 2111) in paragraph at lines 45139--45144
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.
[644]
Underfull \hbox (badness 10000) in paragraph at lines 45160--45165
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[645] [646] [647]
Underfull \hbox (badness 4001) in paragraph at lines 45385--45387
[]\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard 
eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer .
[648] [649] [650] [651] [652]
Underfull \hbox (badness 5417) in paragraph at lines 45750--45754
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[653]
Underfull \hbox (badness 10000) in paragraph at lines 45811--45815
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[654]) (./compiler-pkg.tex
Chapter 2.
[655] [656] [657] [658]) (./datasets-pkg.tex
Chapter 3.
[659] [660] [661] [662] [663] [664]
Underfull \vbox (badness 1472) has occurred while \output is active [665]
[666] [667] [668] [669] [670] [671] [672] [673] [674]
Underfull \hbox (badness 1097) in paragraph at lines 1037--1041
[]\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th
e iden-ti-fi-ca-tion of crim-i-nals.
[675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686]
[687] [688] [689] [690] [691] [692] [693] [694] [695]
Overfull \vbox (4.26088pt too high) has occurred while \output is active
[696] [697] [698] [699] [700] [701]
Overfull \vbox (13.87083pt too high) has occurred while \output is active
[702]
Underfull \vbox (badness 2376) has occurred while \output is active [703]
[704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715]
[716] [717] [718]
Overfull \vbox (10.49593pt too high) has occurred while \output is active
[719]
Overfull \vbox (15.49593pt too high) has occurred while \output is active
[720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731]
[732] [733] [734]) (./grDevices-pkg.tex
Chapter 4.
[735] [736] [737] [738]
Underfull \hbox (badness 3158) in paragraph at lines 282--286
[]\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm
/m/n/10 , with iden-ti-cal mean-ing to
Underfull \hbox (badness 10000) in paragraph at lines 298--303
[]\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/
m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1
0 in
Underfull \hbox (badness 1852) in paragraph at lines 298--303
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 <Rsrc>/src/main/plot.c\T1/ptm/m/n/10 ' which is 
also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t
ion
[739] [740] [741] [742] [743] [744] [745] [746] [747]
Underfull \hbox (badness 1424) in paragraph at lines 898--900
[][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and 
\T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i
-fied as
[748] [749] [750] [751] [752]
Underfull \hbox (badness 5175) in paragraph at lines 1192--1194
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[753] [754]
Underfull \hbox (badness 2512) in paragraph at lines 1311--1313
[]\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc
hive . org / web / 20190613001950 / http : / / efg2 . com /
[755]
Underfull \hbox (badness 1852) in paragraph at lines 1405--1408
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[756] [757] [758]
Underfull \hbox (badness 1490) in paragraph at lines 1611--1616
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[759] [760] [761] [762] [763] [764]
Underfull \hbox (badness 1325) in paragraph at lines 2017--2027
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[765]
Underfull \hbox (badness 10000) in paragraph at lines 2129--2131
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[766] [767] [768]
Underfull \hbox (badness 6758) in paragraph at lines 2308--2311
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[769] [770] [771] [772] [773] [774] [775] [776] [777]
Underfull \hbox (badness 10000) in paragraph at lines 2919--2920
Underfull \vbox (badness 10000) has occurred while \output is active [778]
[779] [780] [781] [782] [783] [784] [785]
Underfull \hbox (badness 10000) in paragraph at lines 3493--3498
[]\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas
ed on the inter-quartile range
[786] [787] [788] [789] [790] [791] [792]
Underfull \vbox (badness 10000) has occurred while \output is active [793]
Underfull \hbox (badness 10000) in paragraph at lines 3992--3995
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as
[794] [795] [796] [797] [798] [799] [800] [801] [802] [803]
Underfull \hbox (badness 10000) in paragraph at lines 4732--4737
[][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en
 / devnet / actionscript / articles / PLRM . pdf$[][]
Underfull \hbox (badness 10000) in paragraph at lines 4732--4737
\T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte
nt / dam / acom / en / devnet / acrobat / pdfs / pdf _
Underfull \hbox (badness 1881) in paragraph at lines 4732--4737
\T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc
-tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac .
[804]
Underfull \vbox (badness 10000) has occurred while \output is active [805]
[806]
Underfull \hbox (badness 1584) in paragraph at lines 4888--4890
[]\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/
n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See
Underfull \hbox (badness 1067) in paragraph at lines 4892--4899
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[807] [808] [809] [810]
Underfull \hbox (badness 1377) in paragraph at lines 5198--5203
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[811]
Underfull \hbox (badness 1418) in paragraph at lines 5274--5281
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,
Underfull \hbox (badness 1755) in paragraph at lines 5292--5294
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[812]
Underfull \hbox (badness 1377) in paragraph at lines 5403--5408
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and
[813]
Underfull \hbox (badness 7344) in paragraph at lines 5472--5474
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[814] [815]
Underfull \hbox (badness 2035) in paragraph at lines 5610--5619
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-
Underfull \hbox (badness 10000) in paragraph at lines 5610--5619
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,
Underfull \hbox (badness 10000) in paragraph at lines 5610--5619
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[816] [817]
Underfull \hbox (badness 10000) in paragraph at lines 5678--5680
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu /
[818] [819]
Underfull \hbox (badness 1546) in paragraph at lines 5820--5828
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[820] [821] [822] [823] [824] [825] [826] [827]
Underfull \hbox (badness 10000) in paragraph at lines 6358--6361
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] [839]
Underfull \hbox (badness 1189) in paragraph at lines 7184--7186
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[840]
Underfull \hbox (badness 10000) in paragraph at lines 7289--7291
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[841] [842] [843] [844] [845]
Underfull \hbox (badness 3780) in paragraph at lines 7603--7609
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[846] [847]
Underfull \hbox (badness 2680) in paragraph at lines 7805--7807
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[848] [849] [850]) (./graphics-pkg.tex
Chapter 5.
[851] [852] [853] [854] [855] [856] [857] [858] [859] [860] [861] [862]
[863] [864] [865]
Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981
 []        \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = "
# {passengers}", legend.text = TRUE)[] 
Underfull \vbox (badness 10000) has occurred while \output is active [866]
[867] [868] [869] [870] [871]
Underfull \hbox (badness 4634) in paragraph at lines 1355--1358
[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
[872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883]
[884] [885] [886]
Underfull \hbox (badness 1728) in paragraph at lines 2333--2335
[]\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n
" \T1/ptm/m/n/10 to sup-press and see also
[887]
Underfull \hbox (badness 1009) in paragraph at lines 2426--2433
\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
[888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899]
[900] [901] [902] [903] [904] [905] [906] [907] [908]
Underfull \vbox (badness 10000) has occurred while \output is active [909]
[910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920]
Underfull \hbox (badness 3229) in paragraph at lines 4602--4607
[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used, see
[921] [922] [923] [924]
Underfull \hbox (badness 10000) in paragraph at lines 5032--5038
[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units.
Underfull \hbox (badness 5908) in paragraph at lines 5032--5038
\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[925] [926]
Underfull \hbox (badness 10000) in paragraph at lines 5163--5166
[927 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//mai.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 5224--5226
[928 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//oma.pdf>]
[929]
Underfull \hbox (badness 10000) in paragraph at lines 5414--5416
[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[930] [931] [932] [933] [934] [935] [936] [937]pdfTeX warning (ext4): destinati
on with the same identifier (name{Rfn.plot}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.5896 \aliasA{plot}{plot.default}{plot}
                                         [938] [939] [940] [941] [942] [943]
[944] [945] [946] [947] [948] [949] [950]
Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802
[][] 
[951 </builddir/build/BUILD/R-4.1.2/library/graphics/help/figures//pch.pdf>]
[952]
Underfull \vbox (badness 10000) has occurred while \output is active [953]
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963]
Underfull \hbox (badness 2012) in paragraph at lines 7623--7626
[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi
nt
[964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975]
[976] [977] [978] [979] [980] [981] [982]
Underfull \hbox (badness 10000) in paragraph at lines 8889--8891
[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color
Underfull \hbox (badness 10000) in paragraph at lines 8891--8893
[]\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color
[983]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit
s}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8971 \HeaderA{units}{Graphical Units}{units}
                                               [984] [985] [986] [987])
(./grid-pkg.tex [988]
Chapter 6.
[989] [990] [991] [992] [993] [994] [995] [996]
Underfull \hbox (badness 2680) in paragraph at lines 486--489
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005]
Underfull \hbox (badness 4279) in paragraph at lines 1112--1121
[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[1006]
Underfull \vbox (badness 10000) has occurred while \output is active [1007]
[1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018]
[1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029]
[1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040]
[1041] [1042] [1043] [1044] [1045] [1046]
Underfull \vbox (badness 10000) has occurred while \output is active [1047]
[1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058]
[1059]
Underfull \hbox (badness 1067) in paragraph at lines 4537--4540
[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1060] [1061] [1062] [1063]
Underfull \hbox (badness 7256) in paragraph at lines 4782--4784
[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074]
[1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085]
[1086] [1087] [1088] [1089] [1090] [1091] [1092] [1093] [1094]
Underfull \hbox (badness 1824) in paragraph at lines 6753--6756
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like \T1/zi4/m/n/10 depth
[1095] [1096] [1097] [1098]) (./methods-pkg.tex
Chapter 7.
[1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106]
Underfull \vbox (badness 10000) has occurred while \output is active [1107]
Underfull \vbox (badness 10000) has occurred while \output is active [1108]
[1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116]
Underfull \hbox (badness 2237) in paragraph at lines 1385--1387
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124]
Underfull \hbox (badness 2181) in paragraph at lines 1932--1939
[]\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob-
jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests
Underfull \hbox (badness 10000) in paragraph at lines 1981--1986
[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class
Underfull \hbox (badness 1038) in paragraph at lines 1981--1986
\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1125] [1126] [1127]
Underfull \hbox (badness 2213) in paragraph at lines 2214--2219
[]\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age
, use \T1/zi4/m/n/10 where =
[1128] [1129] [1130] [1131] [1132]
Underfull \hbox (badness 10000) in paragraph at lines 2574--2577
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1133] [1134]
Underfull \hbox (badness 1132) in paragraph at lines 2714--2718
[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
Underfull \hbox (badness 1033) in paragraph at lines 2746--2751
\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1135] [1136] [1137] [1138] [1139] [1140] [1141]
Underfull \hbox (badness 1102) in paragraph at lines 3303--3305
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1142] [1143] [1144] [1145] [1146]
Underfull \hbox (badness 10000) in paragraph at lines 3634--3639
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments
Underfull \hbox (badness 10000) in paragraph at lines 3642--3651
[]\T1/ptm/m/n/10 The
[1147] [1148]
Underfull \hbox (badness 10000) in paragraph at lines 3762--3763
[] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude
 = "numeric",altitude
[1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157]
Underfull \hbox (badness 1769) in paragraph at lines 4472--4478
[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar
Underfull \hbox (badness 1939) in paragraph at lines 4472--4478
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166]
Underfull \vbox (badness 10000) has occurred while \output is active [1167]
Underfull \vbox (badness 10000) has occurred while \output is active [1168]
[1169] [1170]
Underfull \hbox (badness 4036) in paragraph at lines 5437--5440
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1171]
Underfull \hbox (badness 3803) in paragraph at lines 5512--5514
[]\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p
assed to
[1172] [1173] [1174]
Underfull \hbox (badness 1087) in paragraph at lines 5744--5749
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182]
Underfull \hbox (badness 1675) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1183] [1184] [1185] [1186]
Underfull \vbox (badness 10000) has occurred while \output is active [1187]
[1188] [1189]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.S4}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6973 \aliasA{S4}{S3Part}{S4}
                               [1190] [1191] [1192]pdfTeX warning (ext4): desti
nation with the same identifier (name{Rfn.Complex}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.7229 \aliasA{Complex}{S4groupGeneric}{Complex}
                                                pdfTeX warning (ext4): destinat
ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate
 ignored
<to be read again> 
                   \relax 
l.7231 \aliasA{Logic}{S4groupGeneric}{Logic}
                                            pdfTeX warning (ext4): destination 
with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
red
<to be read again> 
                   \relax 
l.7232 \aliasA{Math}{S4groupGeneric}{Math}
                                          pdfTeX warning (ext4): destination wi
th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7234 \aliasA{Ops}{S4groupGeneric}{Ops}
                                        pdfTeX warning (ext4): destination with
 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.7235 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1193]
Underfull \hbox (badness 2050) in paragraph at lines 7296--7300
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1194] [1195]
Underfull \hbox (badness 1286) in paragraph at lines 7484--7486
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206]
[1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217]
[1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228]
Underfull \hbox (badness 1137) in paragraph at lines 10011--10019
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne
w("signature",functionDef,...)\T1/ptm/m/n/10 . The
[1229] [1230] [1231] [1232] [1233] [1234] [1235]
Underfull \hbox (badness 1852) in paragraph at lines 10564--10568
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1236] [1237] [1238]) (./parallel-pkg.tex
Chapter 8.
Underfull \hbox (badness 5490) in paragraph at lines 14--16
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1239] [1240] [1241] [1242]
Underfull \hbox (badness 1320) in paragraph at lines 300--303
[]\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, 
So-laris and Win-dows.
[1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253]
[1254] [1255] [1256] [1257] [1258]
Underfull \hbox (badness 3386) in paragraph at lines 1401--1404
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1259] [1260] [1261]) (./splines-pkg.tex [1262]
Chapter 9.
Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273]
[1274] [1275] [1276]) (./stats-pkg.tex
Chapter 10.
[1277] [1278] [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287]
[1288] [1289]
Underfull \hbox (badness 1412) in paragraph at lines 882--884
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1290] [1291] [1292] [1293] [1294] [1295] [1296]
Underfull \hbox (badness 2503) in paragraph at lines 1364--1367
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1297] [1298] [1299]
Underfull \hbox (badness 10000) in paragraph at lines 1544--1548
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1
0 or for mul-ti-ple re-sponses of class
[1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310]
[1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
[1322] [1323] [1324] [1325] [1326] [1327]
Underfull \hbox (badness 2503) in paragraph at lines 3514--3517
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338]
[1339] [1340] [1341]
Underfull \hbox (badness 1127) in paragraph at lines 4430--4433
[]\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) 
/ sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the
[1342] [1343] [1344] [1345] [1346]
Underfull \hbox (badness 3989) in paragraph at lines 4770--4777
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355]
Underfull \hbox (badness 2556) in paragraph at lines 5406--5409
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For
Underfull \hbox (badness 2932) in paragraph at lines 5423--5425
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1356] [1357] [1358] [1359] [1360] [1361]
Underfull \hbox (badness 2503) in paragraph at lines 5820--5824
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372]
[1373] [1374]
Underfull \hbox (badness 7081) in paragraph at lines 6614--6617
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method
Underfull \hbox (badness 10000) in paragraph at lines 6618--6620
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385]
[1386]
Underfull \hbox (badness 10000) in paragraph at lines 7465--7468
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397]
[1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407]
Underfull \vbox (badness 10000) has occurred while \output is active [1408]
[1409] [1410] [1411]
Underfull \hbox (badness 2626) in paragraph at lines 9144--9147
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1412] [1413]
Underfull \hbox (badness 2503) in paragraph at lines 9251--9255
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424]
[1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432]
Underfull \hbox (badness 4518) in paragraph at lines 10587--10592
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1433] [1434] [1435] [1436] [1437]
Underfull \hbox (badness 2142) in paragraph at lines 10948--10951
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
Underfull \hbox (badness 1253) in paragraph at lines 10967--10970
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1438]
Underfull \hbox (badness 1708) in paragraph at lines 11029--11033
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1439] [1440] [1441] [1442] [1443]
Underfull \hbox (badness 1694) in paragraph at lines 11425--11428
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11909 \aliasA{hat}{influence.measures}{hat}
                                              [1452] [1453]
Underfull \hbox (badness 1484) in paragraph at lines 12051--12053
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462]
Underfull \hbox (badness 10000) in paragraph at lines 12650--12652
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit =
[1463] [1464] [1465] [1466] [1467]
Underfull \hbox (badness 2894) in paragraph at lines 12986--12990
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478]
[1479]
Underfull \hbox (badness 4518) in paragraph at lines 13737--13742
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488]
Underfull \hbox (badness 4518) in paragraph at lines 14390--14395
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1489] [1490]
Underfull \hbox (badness 8151) in paragraph at lines 14528--14532
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp
olate",statistics =
Underfull \hbox (badness 1199) in paragraph at lines 14535--14537
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501]
[1502] [1503] [1504] [1505] [1506] [1507]
Underfull \hbox (badness 2503) in paragraph at lines 15611--15615
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515]
Underfull \hbox (badness 10000) in paragraph at lines 16124--16130
[]\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo
del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to
Underfull \hbox (badness 1867) in paragraph at lines 16124--16130
\T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response
(m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s
ums any terms
[1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526]
[1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537]
[1538] [1539]
Underfull \hbox (badness 1158) in paragraph at lines 17767--17770
[]\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm
/m/n/10 as the data ar-gu-ment. The ac-
[1540] [1541]
Underfull \vbox (badness 10000) has occurred while \output is active [1542]
Underfull \vbox (badness 10000) has occurred while \output is active [1543]
[1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554]
Underfull \hbox (badness 1377) in paragraph at lines 18790--18795
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on
[1555]
Underfull \hbox (badness 1735) in paragraph at lines 18795--18798
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on
Underfull \hbox (badness 2343) in paragraph at lines 18808--18812
[]\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i
t is un-able to re-duce
Underfull \hbox (badness 3471) in paragraph at lines 18808--18812
\T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re
ltol) \T1/ptm/m/n/10 at a step. De-faults to
Underfull \hbox (badness 2662) in paragraph at lines 18816--18820
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1556] [1557] [1558]
Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041
 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b
ut NM may be ok and "unavoidable",[] 
Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044
 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list(
warn.1d.NelderMead = FALSE)))[] 
[1559] [1560] [1561] [1562] [1563] [1564] [1565]
Underfull \hbox (badness 1337) in paragraph at lines 19503--19506
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573]
Underfull \hbox (badness 3049) in paragraph at lines 20001--20005
[]\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou
rs of stan-dard-ized resid-u-als
[1574] [1575] [1576] [1577]
Underfull \hbox (badness 1194) in paragraph at lines 20264--20267
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1578] [1579] [1580] [1581] [1582] [1583] [1584]
Underfull \hbox (badness 2503) in paragraph at lines 20643--20646
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3919) in paragraph at lines 20670--20672
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson
[1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
[1596] [1597] [1598] [1599] [1600]
Underfull \hbox (badness 10000) in paragraph at lines 21748--21754
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611]
[1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621]
Underfull \hbox (badness 1337) in paragraph at lines 23105--23111
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1622] [1623] [1624] [1625] [1626] [1627] [1628]
Underfull \hbox (badness 3780) in paragraph at lines 23530--23533
[]\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th
e pre-ci-sion to use when for-mat-
Underfull \hbox (badness 1152) in paragraph at lines 23530--23533
\T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s
ions up to 4.0.x, this had been set to
[1629] [1630]
Underfull \hbox (badness 10000) in paragraph at lines 23671--23672
[]\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or
g / wiki / Quantile # Estimating _ quantiles _ from _ a _
[1631] [1632] [1633] [1634]
Underfull \hbox (badness 10000) in paragraph at lines 23955--23958
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
Underfull \hbox (badness 4205) in paragraph at lines 23955--23958
\T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for 
ef-fi-ciency if al-ready
[1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644]
Underfull \hbox (badness 1824) in paragraph at lines 24632--24638
[]\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first
 re-placed by al-ter-
Underfull \hbox (badness 1033) in paragraph at lines 24632--24638
\T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 
where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/
m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where
Underfull \hbox (badness 10000) in paragraph at lines 24653--24656
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] =
[1645]
Underfull \hbox (badness 3690) in paragraph at lines 24722--24726
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653]
Underfull \hbox (badness 2165) in paragraph at lines 25234--25239
[]\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm
/m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1
0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 ,
[1654] [1655] [1656] [1657]
Underfull \hbox (badness 1867) in paragraph at lines 25439--25441
[]\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. 
Passed to
Underfull \hbox (badness 10000) in paragraph at lines 25454--25458
[]\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback =
 use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP
[1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667]
Underfull \vbox (badness 10000) has occurred while \output is active [1668]
[1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678]
Underfull \vbox (badness 10000) has occurred while \output is active [1679]
[1680]
Underfull \hbox (badness 3514) in paragraph at lines 27017--27022
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1681] [1682] [1683]
Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251
 []       \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5]
 == frac(log(2), e^{phi[2]})}),[] 
[1684]
Underfull \hbox (badness 3514) in paragraph at lines 27287--27293
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1685]
Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344
 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d
atN, control = list(scaleOffset=1))[] 
Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346
 []           \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1
e-11, nDcentral=TRUE), trace=TRUE)[] 
[1686] [1687] [1688]
Underfull \hbox (badness 3514) in paragraph at lines 27520--27525
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 27607--27612
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690]
Underfull \hbox (badness 3514) in paragraph at lines 27672--27677
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1691] [1692]
Underfull \hbox (badness 3514) in paragraph at lines 27766--27771
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1693]
Underfull \hbox (badness 6691) in paragraph at lines 27858--27863
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701]
Underfull \hbox (badness 4024) in paragraph at lines 28349--28352
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion
, which
[1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710]
Underfull \hbox (badness 5431) in paragraph at lines 28955--28957
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1711] [1712] [1713] [1714]
Underfull \hbox (badness 5431) in paragraph at lines 29165--29168
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1715] [1716] [1717] [1718] [1719]
Underfull \hbox (badness 1337) in paragraph at lines 29480--29484
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1720] [1721] [1722] [1723]
Underfull \hbox (badness 1616) in paragraph at lines 29792--29795
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734]
[1735] [1736] [1737] [1738] [1739] [1740] [1741]
Underfull \hbox (badness 3557) in paragraph at lines 30927--30931
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4
/m/n/10 interval =
[1742] [1743]
Underfull \vbox (badness 10000) has occurred while \output is active [1744]
[1745] [1746]
Underfull \hbox (badness 1337) in paragraph at lines 31291--31295
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754]
Underfull \hbox (badness 1337) in paragraph at lines 31820--31824
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
Underfull \hbox (badness 10000) in paragraph at lines 31834--31836
[]\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i
-tive nu-meric tol-er-ance, used in
[1755] [1756] [1757]
Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027
 []\T1/zi4/m/n/9 wilcox.test( 4:2,      3:1,     paired=TRUE) # Warning:  canno
t compute exact p-value with ties[] 
[1758] [1759]
Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188
 []      \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps
 = getOption("ts.eps"), ...)[] 
[1760] [1761] [1762] [1763] [1764]) (./stats4-pkg.tex
Chapter 11.
[1765] [1766] [1767]
Underfull \vbox (badness 10000) has occurred while \output is active [1768]
[1769] [1770] [1771] [1772]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.503 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1773] [1774] [1775])
(./tcltk-pkg.tex [1776]
Chapter 12.
[1777] [1778] [1779] [1780] [1781] [1782] [1783]
Underfull \vbox (badness 10000) has occurred while \output is active [1784]
Underfull \hbox (badness 1546) in paragraph at lines 666--673
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795]
[1796]) (./tools-pkg.tex
Chapter 13.
[1797]
LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.
[1798]
Underfull \hbox (badness 3039) in paragraph at lines 167--170
[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1799] [1800]
Underfull \hbox (badness 1308) in paragraph at lines 288--301
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types
Underfull \hbox (badness 4967) in paragraph at lines 288--301
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-
Underfull \hbox (badness 10000) in paragraph at lines 288--301
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 288--301
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1801]
Underfull \hbox (badness 3039) in paragraph at lines 392--394
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
[1802] [1803]
Underfull \hbox (badness 1142) in paragraph at lines 463--467
\T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s
ub-di-rec-tory
[1804] [1805] [1806] [1807] [1808]
Overfull \vbox (7.18602pt too high) has occurred while \output is active
[1809] [1810] [1811] [1812] [1813] [1814]
Underfull \hbox (badness 1014) in paragraph at lines 1174--1176
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies
Underfull \hbox (badness 7238) in paragraph at lines 1180--1182
[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous
Underfull \hbox (badness 10000) in paragraph at lines 1217--1220
[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing
Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1815] [1816] [1817] [1818] [1819]
Underfull \hbox (badness 2293) in paragraph at lines 1569--1571
[]\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with 
its func-tion-al-ity in-te-grated into that of
[1820] [1821]
Underfull \hbox (badness 7981) in paragraph at lines 1707--1715
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1822]
Underfull \hbox (badness 1082) in paragraph at lines 1717--1719
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1823] [1824] [1825]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.GSC}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC}
                                       pdfTeX warning (ext4): destination with 
the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1826] [1827] [1828]
[1829]
Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222
 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl
ogo.svg}{options: width=100}",[] 
[1830] [1831] [1832]
Underfull \hbox (badness 7981) in paragraph at lines 2391--2399
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1833] [1834] [1835] [1836] [1837] [1838] [1839]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2885.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2886.
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 2886.
[1840] [1841] [1842] [1843]
Underfull \hbox (badness 1424) in paragraph at lines 3177--3179
[]\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854]
Underfull \hbox (badness 10000) in paragraph at lines 3878--3880
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1855] [1856]
Underfull \hbox (badness 10000) in paragraph at lines 4017--4020
[]\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 
and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion
[1857]
Underfull \hbox (badness 1137) in paragraph at lines 4119--4121
[]\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal
 sys-tem, as from
[1858] [1859] [1860] [1861] [1862]
Underfull \hbox (badness 1796) in paragraph at lines 4427--4432
[]\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T
1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type ==
[1863]
Underfull \hbox (badness 1838) in paragraph at lines 4501--4507
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The
Underfull \hbox (badness 10000) in paragraph at lines 4501--4507
\T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1864] [1865] [1866] [1867]
Underfull \hbox (badness 2197) in paragraph at lines 4776--4786
[]\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4
/m/it/10 available.packages[][][]\T1/ptm/m/n/10 :
[1868]
Underfull \hbox (badness 1571) in paragraph at lines 4842--4846
[]\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down-
load speed and time spent by
[1869] [1870] [1871]) (./utils-pkg.tex [1872]
Chapter 14.
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ',
[1873] [1874] [1875] [1876] [1877]
Underfull \hbox (badness 10000) in paragraph at lines 378--383
\T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p
tm/m/n/10 with
[1878] [1879] [1880] [1881] [1882]
Underfull \hbox (badness 10000) in paragraph at lines 720--726
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 ,
Underfull \hbox (badness 3343) in paragraph at lines 720--726
\T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1883] [1884]
Underfull \hbox (badness 5847) in paragraph at lines 857--863
[]\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-
Underfull \hbox (badness 4229) in paragraph at lines 857--863
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1885]
Underfull \hbox (badness 3861) in paragraph at lines 925--930
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1886] [1887] [1888]
Underfull \hbox (badness 3323) in paragraph at lines 1108--1116
[]\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1
0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1
/ptm/m/n/10 , in-di-cat-
Underfull \hbox (badness 2961) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f
or-mat-
Underfull \hbox (badness 3919) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t
han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is
Underfull \hbox (badness 3735) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma
x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally.
Underfull \hbox (badness 1817) in paragraph at lines 1108--1116
\T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f
ault by
Underfull \hbox (badness 10000) in paragraph at lines 1120--1122
[]\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing
[1889] [1890] [1891] [1892] [1893] [1894] [1895]
Underfull \hbox (badness 1371) in paragraph at lines 1625--1627
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to
[1896]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 1695.
[1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905]
Underfull \hbox (badness 2057) in paragraph at lines 2346--2348
[]\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1906] [1907] [1908] [1909] [1910]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.2697 ... the Clipboard in MS Windows}{clipboard}
                                                   [1911] [1912] [1913]
Underfull \hbox (badness 1748) in paragraph at lines 2864--2867
[]\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1914] [1915] [1916] [1917] [1918] [1919]
Underfull \hbox (badness 5388) in paragraph at lines 3274--3278
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/
m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read 
us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header =
Underfull \hbox (badness 2285) in paragraph at lines 3279--3282
[]\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi
4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[]
[][](...,header = TRUE,sep =
[1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930]
Underfull \hbox (badness 1430) in paragraph at lines 4063--4071
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[1931]
Underfull \hbox (badness 1231) in paragraph at lines 4140--4152
[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1932] [1933]
Underfull \hbox (badness 10000) in paragraph at lines 4297--4299
[]\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow
nload.file[][][] \T1/ptm/m/n/10 and
[1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] [1943]pdfTeX war
ning (ext4): destination with the same identifier (name{Rfn.format}) has been a
lready used, duplicate ignored
<to be read again> 
                   \relax 
l.4995 ...mat Unordered and Ordered Lists}{format}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.4995 ...mat Unordered and Ordered Lists}{format}
                                                   [1944] [1945] [1946]
[1947] [1948] [1949] [1950] [1951]
Underfull \hbox (badness 1622) in paragraph at lines 5514--5518
[]\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing
 to ex-ter-nal GUIs or to the
[1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961]
LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
(Font)              using `T1/zi4/m/it' instead on input line 6232.
[1962]
Underfull \hbox (badness 1371) in paragraph at lines 6236--6238
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to
[1963]
Underfull \hbox (badness 1502) in paragraph at lines 6325--6330
[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-
Underfull \hbox (badness 2103) in paragraph at lines 6325--6330
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1964] [1965]
Underfull \hbox (badness 10000) in paragraph at lines 6498--6507
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1966]
Underfull \hbox (badness 2150) in paragraph at lines 6562--6565
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[1967] [1968]
Underfull \hbox (badness 3118) in paragraph at lines 6701--6703
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1969] [1970]
Underfull \hbox (badness 1325) in paragraph at lines 6880--6884
[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
Underfull \hbox (badness 4726) in paragraph at lines 6892--6898
\T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be
 a char-ac-ter vec-tor, a sub-set of
[1971]
Underfull \hbox (badness 10000) in paragraph at lines 6964--6967
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be
Underfull \hbox (badness 10000) in paragraph at lines 6964--6967
\T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou
rce pack-age in-stall. E.g.,
Underfull \hbox (badness 1424) in paragraph at lines 6972--6975
[]\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p
tm/m/it/10 not \T1/ptm/m/n/10 passed to
[1972]
Underfull \hbox (badness 3219) in paragraph at lines 7043--7050
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-
Underfull \hbox (badness 5175) in paragraph at lines 7043--7050
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages
Underfull \hbox (badness 1342) in paragraph at lines 7043--7050
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
Underfull \hbox (badness 1596) in paragraph at lines 7043--7050
[][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/
ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently
Underfull \hbox (badness 2932) in paragraph at lines 7051--7054
[]\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m
/n/10 al-ways works pro-vided the pack-age con-tains no
[1973] [1974]
Underfull \hbox (badness 1546) in paragraph at lines 7177--7180
[]\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa
ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m
/n/10 will
Underfull \hbox (badness 10000) in paragraph at lines 7210--7215
[][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985]
[1986]
Underfull \hbox (badness 10000) in paragraph at lines 7997--7999
[]\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/
n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class
[1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994]
Underfull \vbox (badness 10000) has occurred while \output is active [1995]
[1996] [1997] [1998]
Underfull \hbox (badness 10000) in paragraph at lines 8735--8737
[]\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi
4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from
Underfull \hbox (badness 2310) in paragraph at lines 8757--8762
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1999] [2000] [2001] [2002] [2003] [2004] [2005]
Underfull \hbox (badness 1248) in paragraph at lines 9283--9287
[]\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/
n/10 source tar-balls. The name(s) of the pack-ages are taken from the
[2006]
Underfull \hbox (badness 1789) in paragraph at lines 9363--9365
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[2007] [2008] [2009] [2010] [2011] [2012] [2013] [2014] [2015]
Underfull \vbox (badness 5533) has occurred while \output is active [2016]
[2017] [2018]
Underfull \hbox (badness 1097) in paragraph at lines 10200--10203
[]\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2019] [2020]
Underfull \hbox (badness 3000) in paragraph at lines 10336--10341
[][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2021] [2022] [2023] [2024] [2025] [2026] [2027] [2028]
Underfull \hbox (badness 2134) in paragraph at lines 10925--10930
[][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write.
table[][][]\T1/ptm/m/n/10 ;
[2029]
Underfull \hbox (badness 10000) in paragraph at lines 10981--10986
[]\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for
Underfull \hbox (badness 10000) in paragraph at lines 10981--10986
\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES
_ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 ,
[2030] [2031] [2032] [2033] [2034] [2035] [2036]
Underfull \hbox (badness 2469) in paragraph at lines 11475--11479
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.
Underfull \hbox (badness 3428) in paragraph at lines 11475--11479
[][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
[2037] [2038] [2039] [2040] [2041] [2042]
Underfull \hbox (badness 4060) in paragraph at lines 11891--11894
[]\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not 
used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var
i-able
[2043]
Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914
 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr
aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] 
[2044] [2045] [2046]
Underfull \hbox (badness 2150) in paragraph at lines 12162--12164
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac
s / manual /
[2047] [2048] [2049] [2050]
Underfull \hbox (badness 10000) in paragraph at lines 12381--12385
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
Underfull \hbox (badness 10000) in paragraph at lines 12412--12418
[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2051] [2052]
Underfull \hbox (badness 1009) in paragraph at lines 12606--12618
[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2053]
Underfull \hbox (badness 4779) in paragraph at lines 12646--12648
[]\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure
s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a
nd
Underfull \hbox (badness 1077) in paragraph at lines 12676--12683
\T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p
er-sonal' di-rec-tory, oth-er-wise to
[2054] [2055] [2056] [2057] [2058] [2059]
Underfull \hbox (badness 3780) in paragraph at lines 13084--13088
[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via
Underfull \hbox (badness 2635) in paragraph at lines 13100--13103
[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
[2060] [2061] [2062]
Underfull \hbox (badness 2302) in paragraph at lines 13305--13307
[]\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t
o the Win-dows API call
[2063] [2064] [2065] [2066] [2067]
Underfull \hbox (badness 10000) in paragraph at lines 13603--13608
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), []
[]\T1/zi4/m/it/10 deparse[][][](control = <S>) \T1/ptm/m/n/10 will not have
Underfull \hbox (badness 5970) in paragraph at lines 13612--13615
[]\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t
ive
[2068] [2069] [2070] [2071] [2072] [2073]
Underfull \hbox (badness 2932) in paragraph at lines 14050--14057
[]\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault)
 then the avail-able syn-tax ob-jects are con-sulted in turn,
Underfull \hbox (badness 1688) in paragraph at lines 14050--14057
\T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 
com-po-nent matches (as a reg-exp) the file name. Ob-
[2074] [2075] [2076] [2077]
Underfull \hbox (badness 6510) in paragraph at lines 14358--14362
[]\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t
he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a
ble
Underfull \hbox (badness 10000) in paragraph at lines 14365--14368
[][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup 
. org /
Underfull \hbox (badness 2245) in paragraph at lines 14365--14368
\T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
[2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087]
Underfull \hbox (badness 10000) in paragraph at lines 15032--15037
[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \
T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to
Underfull \hbox (badness 3861) in paragraph at lines 15032--15037
[][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i
gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n
/10 and
Underfull \hbox (badness 1052) in paragraph at lines 15038--15040
[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
 in-stall. See
[2088]
Underfull \hbox (badness 10000) in paragraph at lines 15097--15100
[][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package
s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n
/10 ,
[2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099]
[2100]
Underfull \hbox (badness 10000) in paragraph at lines 15875--15877
[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
tion e.g. \T1/zi4/m/it/10 file =
[2101] [2102] [2103]) [2104] [2105] [2106] (./KernSmooth-pkg.tex
Chapter 15.
[2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116])
(./MASS-pkg.tex
Chapter 16.
[2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127]
[2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138]
[2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149]
[2150] [2151] [2152] [2153]
Underfull \hbox (badness 7944) in paragraph at lines 2703--2706
[]\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an
d graph-i-cal pa-ram-e-ters. Note that
[2154] [2155] [2156]
Underfull \hbox (badness 10000) in paragraph at lines 2873--2878
\T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm
/m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic
"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative
[2157] [2158]
Underfull \hbox (badness 4686) in paragraph at lines 3041--3043
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169]
[2170] [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180]
[2181] [2182] [2183]
Underfull \hbox (badness 1117) in paragraph at lines 4802--4805
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2184]
Underfull \hbox (badness 1117) in paragraph at lines 4880--4883
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195]
[2196] [2197] [2198] [2199] [2200] [2201]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.6146 ...sical N, P, K Factorial Experiment}{npk}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.6146 ...sical N, P, K Factorial Experiment}{npk}
                                                   [2202] [2203] [2204]
[2205] [2206] [2207] [2208] [2209] [2210] [2211] [2212] [2213] [2214]
Underfull \hbox (badness 1117) in paragraph at lines 7117--7124
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[2215]
Underfull \hbox (badness 3138) in paragraph at lines 7188--7194
[]\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea
s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c
mr/m/n/10 ) =
[2216] [2217] [2218]
Underfull \hbox (badness 6775) in paragraph at lines 7367--7370
\T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n
ant com-po-nents are used (ex-cept for
[2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227]
Underfull \hbox (badness 4686) in paragraph at lines 8000--8002
[]\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i-
na-tor ex-ceeds
[2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238]
[2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249]
[2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] [2258] [2259] [2260]
[2261] [2262] [2263] [2264]) (./Matrix-pkg.tex
Chapter 17.
Underfull \hbox (badness 10000) in paragraph at lines 41--44
[]\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec
t to change, and if you
Underfull \hbox (badness 10000) in paragraph at lines 41--44
\T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack-
age main-tain-ers
[2265]
Underfull \hbox (badness 1769) in paragraph at lines 95--98
[]\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o
wn code. Please con-tact us
[2266] [2267] [2268] [2269]
Underfull \hbox (badness 5119) in paragraph at lines 509--513
[]\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in
g from class
[2270] [2271]
Underfull \hbox (badness 2035) in paragraph at lines 605--608
[]\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-her-its
 from class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1
/zi4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a
[2272] [2273]
Underfull \hbox (badness 1701) in paragraph at lines 758--762
[]\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t
ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org /
[2274] [2275]
Underfull \hbox (badness 5175) in paragraph at lines 877--882
[]\T1/ptm/m/n/10 option [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-
cat-ing if the re-sult should be sparse, i.e., for-
Underfull \hbox (badness 10000) in paragraph at lines 877--882
\T1/ptm/m/n/10 mally in-her-it-ing from \T1/zi4/m/it/10 "[][]sparseMatrix[][][]
"\T1/ptm/m/n/10 . The de-fault, [][]\T1/zi4/m/it/10 NA[][][]\T1/ptm/m/n/10 , de
-
Underfull \hbox (badness 6675) in paragraph at lines 877--882
\T1/ptm/m/n/10 cides from the ``spar-sity'' of \T1/zi4/m/it/10 x \T1/ptm/m/n/10
 and \T1/zi4/m/it/10 y\T1/ptm/m/n/10 , see e.g., the \T1/phv/m/n/10 R \T1/ptm/m
/n/10 code in
[2276] [2277]
Underfull \hbox (badness 10000) in paragraph at lines 1056--1058
[]\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n
/10 (or equiv-a-lently, \T1/zi4/m/it/10 to =
[2278] [2279]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.chol}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1168 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic
ate ignored
<to be read again> 
                   \relax 
l.1168 ...- 'Matrix' S4 Generic and Methods}{chol}
                                                  
Underfull \hbox (badness 1117) in paragraph at lines 1223--1229
\T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc
h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t
he same al-go-rithm
[2280] [2281] [2282]
Underfull \hbox (badness 2277) in paragraph at lines 1423--1426
[]\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer
-ent types of ma-tri-ces. Use
[2283] [2284]
Underfull \hbox (badness 1097) in paragraph at lines 1595--1598
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and
 \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 "
dgeMatrix"\T1/ptm/m/n/10 , by class
Underfull \hbox (badness 1783) in paragraph at lines 1601--1605
[]\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1
/ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend
[2285]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col
Sums}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1658 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.1658 ... Row and Column Sums and Means}{colSums}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.1659 \aliasA{colMeans}{colSums}{colMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i
gnored
<to be read again> 
                   \relax 
l.1680 \aliasA{rowMeans}{colSums}{rowMeans}
                                           pdfTeX warning (ext4): destination w
ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig
nored
<to be read again> 
                   \relax 
l.1691 \aliasA{rowSums}{colSums}{rowSums}
                                          [2286] [2287] [2288]
Underfull \hbox (badness 3547) in paragraph at lines 1910--1913
[]\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10
 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when
[2289] [2290] [2291] [2292] [2293]
Underfull \hbox (badness 1360) in paragraph at lines 2333--2337
[]\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n
ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via
[2294] [2295] [2296] [2297]
Underfull \hbox (badness 2717) in paragraph at lines 2649--2653
[]\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in
 more than one pos-si-ble
[2298] [2299]
Underfull \hbox (badness 6842) in paragraph at lines 2739--2742
[]\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T
1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[]
[][] \T1/ptm/m/n/10 (with ``su-per-class''
[2300]
Underfull \hbox (badness 10000) in paragraph at lines 3026--3030
[]\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro
up meth-ods re-turn a
[2301] [2302] [2303]
Underfull \hbox (badness 1173) in paragraph at lines 3236--3238
[]\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t
his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and
Underfull \hbox (badness 10000) in paragraph at lines 3283--3285
[][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre
fer-able to (and more ef-fi-cient than)
[2304] [2305]
Underfull \hbox (badness 1354) in paragraph at lines 3482--3485
[]\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex
-plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in
-her-it-ing from
[2306] [2307] [2308] [2309] [2310]
Underfull \hbox (badness 6188) in paragraph at lines 3892--3895
[]\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 ,
 or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type =
Underfull \hbox (badness 5147) in paragraph at lines 3895--3898
[]\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 ,
 or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type =
[2311] [2312]
Underfull \hbox (badness 2318) in paragraph at lines 4010--4014
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C
lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi
4/m/it/10 "dMatrix"\T1/ptm/m/n/10 ,
[2313] [2314]
Underfull \hbox (badness 5245) in paragraph at lines 4146--4150
[]\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1
0 : the [][]\T1/zi4/m/it/10 determinant[][][](x)
[2315] [2316] [2317] [2318] [2319] [2320]
Overfull \hbox (23.27168pt too wide) in paragraph at lines 4563--4563
 []\T1/zi4/m/n/9 str(jgl009 <- ## https://math.nist.gov/MatrixMarket/data/Harwe
ll-Boeing/counterx/counterx.html[] 
Overfull \hbox (8.27782pt too wide) in paragraph at lines 4570--4570
 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB
/Boeing/msc00726.tar.gz"))))[] 
[2321] [2322]
Underfull \hbox (badness 1931) in paragraph at lines 4802--4804
[]\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/
ptm/m/n/10 codes should be aligned, see
[2323] [2324] [2325] [2326] [2327]
Underfull \hbox (badness 1005) in paragraph at lines 5108--5113
[]\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA 
\T1/ptm/m/n/10 means no bor-der is drawn.
Underfull \hbox (badness 1655) in paragraph at lines 5108--5113
\T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4
/m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is
Underfull \hbox (badness 5862) in paragraph at lines 5127--5130
[]\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][
]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use
[2328]
Overfull \hbox (42.75635pt too wide) in paragraph at lines 5175--5175
 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor
der.col = adjustcolor("skyblue", 1/2))[] 
[2329]
Underfull \hbox (badness 3229) in paragraph at lines 5276--5285
[]\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o
r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within
 the
[2330]
Underfull \hbox (badness 10000) in paragraph at lines 5318--5320
[]\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot
her sig-na-tures (use
Underfull \hbox (badness 4995) in paragraph at lines 5323--5326
[]\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : 
a user con-ve-nience, to al-low
Underfull \hbox (badness 10000) in paragraph at lines 5333--5336
[]\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c
o-er-cion to a tra-di-tional
[2331] [2332] [2333] [2334] [2335]
Underfull \hbox (badness 1014) in paragraph at lines 5712--5715
[]\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10
 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10
 is a tri-an-gu-lar ma-trix. Anal-o-gously,
[2336] [2337] [2338] [2339]
Underfull \hbox (badness 10000) in paragraph at lines 6027--6030
[]\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2340]
Underfull \hbox (badness 2478) in paragraph at lines 6139--6144
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde
nseMatrix"\T1/ptm/m/n/10 . Class
[2341]
Underfull \hbox (badness 10000) in paragraph at lines 6147--6150
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2342]
Underfull \hbox (badness 10000) in paragraph at lines 6339--6342
[]\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2343]
Underfull \hbox (badness 10000) in paragraph at lines 6437--6440
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2344]
Underfull \hbox (badness 10000) in paragraph at lines 6512--6515
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2345]
Underfull \hbox (badness 2050) in paragraph at lines 6588--6591
[]\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth
-ods for dif-fer-ent types of ma-tri-ces. Use
[2346] [2347] [2348] [2349] [2350]
Underfull \hbox (badness 6268) in paragraph at lines 6901--6905
[]\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1
/ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1
0 . How-ever,
[2351]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det
}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7000 \aliasA{det}{Matrix-class}{det}
                                      
Underfull \hbox (badness 1527) in paragraph at lines 7093--7095
[]\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \
T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode
[2352]
Underfull \hbox (badness 4846) in paragraph at lines 7098--7101
[]\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1
/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing
Underfull \hbox (badness 10000) in paragraph at lines 7103--7106
[2353]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp
cent.*.Rpcent.}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.7176 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.crossprod}) has been already used, dup
licate ignored
<to be read again> 
                   \relax 
l.7284 ...A{crossprod}{matrix-products}{crossprod}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.7383 ...tcrossprod}{matrix-products}{tcrossprod}
                                                   [2354]
Underfull \hbox (badness 10000) in paragraph at lines 7556--7561
[]\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot
her sig-na-tures (use
Underfull \hbox (badness 1448) in paragraph at lines 7556--7561
\T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m
ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of
Underfull \hbox (badness 10000) in paragraph at lines 7565--7567
[]\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r
e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an
Underfull \hbox (badness 10000) in paragraph at lines 7567--7569
[]\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r
e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an
Underfull \hbox (badness 1264) in paragraph at lines 7571--7572
[]\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot
her sig-na-tures, see
[2355] [2356]
Underfull \hbox (badness 1430) in paragraph at lines 7715--7720
[]\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio
n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1
/zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][]
\T1/ptm/m/n/10 , and
[2357]
Underfull \hbox (badness 10000) in paragraph at lines 7786--7789
[]\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally
 equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2358]
Underfull \hbox (badness 10000) in paragraph at lines 7842--7844
[]\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/
ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X
[2359] [2360]
Underfull \vbox (badness 10000) has occurred while \output is active [2361]
Underfull \hbox (badness 2478) in paragraph at lines 8049--8054
[]\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly
. Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde
nseMatrix"\T1/ptm/m/n/10 . Class
Underfull \hbox (badness 10000) in paragraph at lines 8057--8060
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); 
use, e.g.,
[2362] [2363]
Underfull \hbox (badness 5924) in paragraph at lines 8251--8253
[]\T1/ptm/m/n/10 fast sim-ple meth-ods
[2364]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor
m}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8291 \HeaderA{norm}{Matrix Norms}{norm}
                                         pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor
ed
<to be read again> 
                   \relax 
l.8291 \HeaderA{norm}{Matrix Norms}{norm}
                                          [2365] [2366]
Underfull \hbox (badness 10000) in paragraph at lines 8564--8567
[]\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call
y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion
[2367]
Underfull \hbox (badness 10000) in paragraph at lines 8654--8657
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2368]
Underfull \hbox (badness 10000) in paragraph at lines 8730--8733
[]\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10
 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u
se, e.g.,
[2369]
Underfull \vbox (badness 10000) has occurred while \output is active [2370]
Underfull \hbox (badness 10000) in paragraph at lines 8856--8858
[]\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe
r sig-na-tures (use
Underfull \hbox (badness 10000) in paragraph at lines 8861--8864
[]\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a 
user con-ve-nience, to al-low
[2371] [2372] [2373] [2374]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.qr}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9093 \aliasA{qr}{qr-methods}{qr}
                                   [2375] [2376] [2377] [2378]pdfTeX warning (e
xt4): destination with the same identifier (name{Rfn.rcond}) has been already u
sed, duplicate ignored
<to be read again> 
                   \relax 
l.9419 ... the Reciprocal Condition Number}{rcond}
                                                   [2379] [2380] [2381]
[2382] [2383]
Underfull \hbox (badness 2351) in paragraph at lines 9723--9731
[]\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 (
\OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment,
 via one di-men-sional
Underfull \hbox (badness 1852) in paragraph at lines 9723--9731
\T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][](
nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 
is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 ---
Underfull \hbox (badness 2343) in paragraph at lines 9723--9731
\T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls []
[]\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z
i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 ,
[2384] [2385] [2386] [2387]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.solve}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9998 \aliasA{solve}{solve-methods}{solve}
                                            [2388]
Underfull \hbox (badness 10000) in paragraph at lines 10161--10168
[]\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse =
[2389]
Underfull \hbox (badness 4403) in paragraph at lines 10222--10225
[]\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing 
\T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and
Underfull \hbox (badness 10000) in paragraph at lines 10292--10295
[]\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu
la and data frame
[2390]
Underfull \hbox (badness 10000) in paragraph at lines 10328--10331
[]\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co
-er-ca-ble to)
Underfull \hbox (badness 10000) in paragraph at lines 10339--10343
[]\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for
[2391] [2392] [2393] [2394] [2395] [2396] [2397] [2398]
Underfull \hbox (badness 10000) in paragraph at lines 10916--10924
[]\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn
s an ob-ject of S3 class
Underfull \hbox (badness 1796) in paragraph at lines 10916--10924
\T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z
i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x)
 \T1/ptm/m/n/10 (or just
Underfull \hbox (badness 10000) in paragraph at lines 10941--10949
[]\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 
: Co-er-cion of a fac-tor to
Underfull \hbox (badness 1112) in paragraph at lines 10941--10949
\T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca
-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class
[2399]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr.
Q}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.11007 \aliasA{qr.Q}{sparseQR-class}{qr.Q}
                                            [2400] [2401]
Underfull \hbox (badness 5036) in paragraph at lines 11193--11195
[]\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case
 a
[2402] [2403]
Underfull \hbox (badness 10000) in paragraph at lines 11400--11403
[]\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/
m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list
[2404]
Underfull \vbox (badness 10000) has occurred while \output is active [2405]
[2406] [2407]
Underfull \hbox (badness 10000) in paragraph at lines 11669--11674
[]\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/
it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be
[2408]
Underfull \hbox (badness 2057) in paragraph at lines 11749--11751
[]\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe
r-ent ma-trix classes, use e.g.,
[2409] [2410]
Underfull \hbox (badness 10000) in paragraph at lines 11918--11923
[]\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z
i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[]
[][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for
Underfull \hbox (badness 1831) in paragraph at lines 11924--11930
[]\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1
/zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar
e de-fined
[2411]
Underfull \hbox (badness 1902) in paragraph at lines 11959--11963
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m
/it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] 
\T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a
nd other
[2412] [2413] [2414] [2415] [2416] [2417] [2418]
Underfull \hbox (badness 6910) in paragraph at lines 12558--12560
[]\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back
[2419]
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12605.
Package hyperref Warning: Glyph not defined in PU encoding,
(hyperref)                removing `\Rpercent' on input line 12605.
[2420] [2421]) (./boot-pkg.tex [2422]
Chapter 18.
[2423] [2424] [2425] [2426] [2427] [2428] [2429] [2430] [2431] [2432]
Underfull \hbox (badness 1297) in paragraph at lines 799--809
[]\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce
sses, the de-fault be-haviour
[2433]
Underfull \hbox (badness 1881) in paragraph at lines 826--828
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2434]
Underfull \vbox (badness 10000) has occurred while \output is active [2435]
[2436]
Underfull \hbox (badness 10000) in paragraph at lines 1068--1072
[]\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i
n-ter-
Underfull \hbox (badness 10000) in paragraph at lines 1068--1072
\T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues
Underfull \hbox (badness 1859) in paragraph at lines 1068--1072
\T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply
 \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will
[2437]
Underfull \hbox (badness 2150) in paragraph at lines 1105--1111
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa
ult value is
[2438] [2439] [2440] [2441]
Underfull \hbox (badness 1571) in paragraph at lines 1445--1447
[]\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An
al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis-
[2442] [2443] [2444] [2445] [2446] [2447]
Underfull \hbox (badness 1005) in paragraph at lines 1800--1807
[]\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 "
ordinary" \T1/ptm/m/n/10 (case re-sam-pling),
[2448] [2449]
Underfull \vbox (badness 10000) has occurred while \output is active [2450]
Underfull \hbox (badness 7379) in paragraph at lines 2084--2086
[]\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch
an-ning House.
[2451] [2452] [2453] [2454]
Underfull \hbox (badness 1565) in paragraph at lines 2338--2343
[]\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori
g-i-nal data set
[2455]
Underfull \hbox (badness 1881) in paragraph at lines 2432--2434
[]\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi
-cient boot-strap sim-u-la-tion.
[2456] [2457]
Underfull \hbox (badness 2970) in paragraph at lines 2536--2540
[]\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i
t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t
he sam-ple
Underfull \hbox (badness 2310) in paragraph at lines 2536--2540
\T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it
/10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n
/10 is used. This is mul-ti-plied by
[2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468]
[2469] [2470] [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479]
[2480]
Underfull \hbox (badness 10000) in paragraph at lines 4190--4192
[]\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault 
is
[2481] [2482] [2483] [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491]
Underfull \hbox (badness 3000) in paragraph at lines 4959--4962
[]\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put 
of a call to
[2492] [2493] [2494] [2495]
Underfull \hbox (badness 2293) in paragraph at lines 5238--5241
[]\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the 
boot-strap
Underfull \hbox (badness 1668) in paragraph at lines 5238--5241
\T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl
os-est to
[2496] [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] [2506]
Underfull \hbox (badness 4954) in paragraph at lines 6021--6024
[]\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa
ddle.distn"\T1/ptm/m/n/10 . See the help file for
[2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515]
Underfull \hbox (badness 1596) in paragraph at lines 6742--6746
[]\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m
ent ex-pected by
[2516] [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525])
(./class-pkg.tex [2526]
Chapter 19.
[2527] [2528] [2529] [2530] [2531] [2532] [2533] [2534] [2535] [2536] [2537]
[2538] [2539] [2540] [2541] [2542]) (./cluster-pkg.tex
Chapter 20.
[2543] [2544] [2545] [2546] [2547]
Underfull \vbox (badness 7777) has occurred while \output is active [2548]
[2549] [2550] [2551] [2552]
Underfull \hbox (badness 4144) in paragraph at lines 691--694
[]\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem
-ory (and hence time), but dis-ables
[2553] [2554]
Underfull \hbox (badness 1412) in paragraph at lines 783--788
[]\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/
ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K
amil Ko-zlowski
[2555]
Underfull \hbox (badness 10000) in paragraph at lines 881--883
[]\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p
le, see
[2556] [2557]
Underfull \hbox (badness 10000) in paragraph at lines 992--994
[]\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is
Underfull \hbox (badness 1342) in paragraph at lines 1006--1010
[]\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in
 2012,
[2558] [2559] [2560]
Underfull \hbox (badness 6110) in paragraph at lines 1207--1211
[]\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/
m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne
nt, e.g., for
[2561] [2562] [2563]
Underfull \hbox (badness 10000) in paragraph at lines 1476--1479
[2564] [2565]
Underfull \hbox (badness 2503) in paragraph at lines 1588--1591
[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or
 \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of
[2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573]
Underfull \hbox (badness 10000) in paragraph at lines 2182--2185
Underfull \hbox (badness 10000) in paragraph at lines 2196--2202
[][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the 
[][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell
ipsoid \T1/ptm/m/n/10 ob-jects.
[2574] [2575] [2576] [2577]
Underfull \hbox (badness 6675) in paragraph at lines 2431--2433
[]\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl
us-ter-ing, see
[2578] [2579] [2580] [2581] [2582] [2583] [2584]
Underfull \hbox (badness 2980) in paragraph at lines 2961--2965
[][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc
es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl
ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 ,
[2585] [2586] [2587] [2588] [2589] [2590]
Underfull \hbox (badness 1142) in paragraph at lines 3302--3305
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2591] [2592]
Underfull \hbox (badness 1142) in paragraph at lines 3421--3424
[]\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/
ptm/m/n/10 ) may also be sup-plied and are passed to
[2593] [2594] [2595]
Underfull \hbox (badness 2582) in paragraph at lines 3644--3649
[][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi
4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p
tm/m/n/10 ,
[2596]
Underfull \hbox (badness 3209) in paragraph at lines 3706--3711
[]\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi
4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which
Underfull \hbox (badness 8019) in paragraph at lines 3706--3711
\T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/
m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx
[2597] [2598] [2599] [2600] [2601]
Underfull \hbox (badness 10000) in paragraph at lines 3998--4000
[]\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T
1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for
[2602] [2603] [2604] [2605]
Underfull \hbox (badness 2626) in paragraph at lines 4227--4232
[]\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/
n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col =
[2606]
Underfull \hbox (badness 1383) in paragraph at lines 4305--4310
[]\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m
/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T
1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial)
[2607] [2608] [2609] [2610] [2611] [2612] [2613]
Underfull \hbox (badness 10000) in paragraph at lines 4748--4750
[]\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file 
`\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side
[2614] [2615]) (./codetools-pkg.tex [2616]
Chapter 21.
[2617] [2618] [2619] [2620] [2621]) (./foreign-pkg.tex [2622]
Chapter 22.
[2623]
Underfull \hbox (badness 10000) in paragraph at lines 78--80
[]\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : /
 / waikato . github . io / weka-[]wiki / formats _ and _
[2624] [2625] [2626] [2627] [2628] [2629] [2630]
Underfull \hbox (badness 10000) in paragraph at lines 505--514
[]\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif-
fer-
Underfull \hbox (badness 10000) in paragraph at lines 505--514
\T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de
-fault), the first orig-i-nal value
Underfull \hbox (badness 10000) in paragraph at lines 505--514
\T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named 
to
Underfull \hbox (badness 7133) in paragraph at lines 550--558
[]\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / 
en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][]
[2631]
Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624
 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to 
R factor labels) are uncomplete,[] 
[2632] [2633] [2634]
Underfull \hbox (badness 10000) in paragraph at lines 812--813
[2635] [2636] [2637]
Underfull \hbox (badness 10000) in paragraph at lines 990--992
[]\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : /
 / waikato . github . io / weka-[]wiki / formats _ and _
[2638] [2639] [2640] [2641]
Underfull \hbox (badness 10000) in paragraph at lines 1270--1276
[]\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign
:::writeForeignStata\T1/ptm/m/n/10 ,
[2642] [2643]) (./lattice-pkg.tex [2644]
Chapter 23.
[2645]
Underfull \hbox (badness 1484) in paragraph at lines 117--121
[]\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li
n-ing the use of Trel-lis graph-ics;
Underfull \hbox (badness 10000) in paragraph at lines 117--121
\T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / 
departments / sia / project / trellis /
[2646] [2647] [2648] [2649] [2650] [2651] [2652] [2653] [2654] [2655] [2656]
[2657] [2658] [2659] [2660]
Underfull \hbox (badness 1062) in paragraph at lines 1398--1402
\T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta
-tion for
[2661]
Underfull \vbox (badness 4416) has occurred while \output is active [2662]
Underfull \hbox (badness 1803) in paragraph at lines 1566--1583
[][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack-
age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 1566--1583
[][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p
anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/it/10 strip.default[][][]\T1/ptm/m/n/10 ,
[2663] [2664] [2665]
Underfull \hbox (badness 3009) in paragraph at lines 1725--1727
[]\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][
][]\T1/ptm/m/n/10 , which may pass them on to
Underfull \hbox (badness 6808) in paragraph at lines 1755--1759
[]\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p
assed to
[2666] [2667] [2668] [2669] [2670]
Underfull \hbox (badness 10000) in paragraph at lines 2141--2144
[]\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, 
the value of
[2671] [2672] [2673] [2674] [2675] [2676] [2677] [2678] [2679] [2680]
Underfull \hbox (badness 2781) in paragraph at lines 2849--2851
[]\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col.
regions \T1/ptm/m/n/10 ar-gu-ment in
[2681] [2682]
Underfull \hbox (badness 2486) in paragraph at lines 3001--3005
[]\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for 
the de-fault panel func-tion
[2683] [2684] [2685] [2686] [2687] [2688]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.parallel}) has been already used, duplicate ign
ored
<to be read again> 
                   \relax 
l.3475 \aliasA{parallel}{B\_08\_splom}{parallel}
                                                 [2689] [2690] [2691] [2692]
[2693] [2694] [2695] [2696]
Underfull \hbox (badness 5696) in paragraph at lines 3970--3974
[]\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault 
set-tings
Underfull \hbox (badness 10000) in paragraph at lines 3970--3974
\T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme =
 "col.whitebg")\T1/ptm/m/n/10 .
Underfull \hbox (badness 2435) in paragraph at lines 3970--3974
\T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa
ded) set to
[2697]
Underfull \hbox (badness 1173) in paragraph at lines 4109--4113
[]\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un-
spec-i-fied in
[2698]
Underfull \hbox (badness 3219) in paragraph at lines 4136--4138
[]\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i
s-sued when
[2699] [2700]
Underfull \hbox (badness 3492) in paragraph at lines 4336--4346
[]\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 
is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 ,
[2701]
Underfull \hbox (badness 10000) in paragraph at lines 4361--4364
[]\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo
t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 4364--4366
[]\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p
lot.polygon \T1/ptm/m/n/10 and
[2702] [2703] [2704] [2705] [2706] [2707] [2708] [2709] [2710]
Underfull \hbox (badness 6157) in paragraph at lines 5087--5090
[]\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles
 via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and
[2711] [2712] [2713] [2714] [2715] [2716] [2717]
Underfull \hbox (badness 10000) in paragraph at lines 5545--5548
[]\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i
-zon-tal.
Underfull \hbox (badness 5592) in paragraph at lines 5545--5548
\T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le
ft of pan-els us-ing
[2718] [2719] [2720] [2721] [2722]
Underfull \hbox (badness 4805) in paragraph at lines 5907--5911
[]\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should 
be high-
Underfull \hbox (badness 10000) in paragraph at lines 5918--5925
[]\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t
ra pa-ram-e-ters are passed on to
Underfull \hbox (badness 1226) in paragraph at lines 5918--5925
\T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi
fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as
Underfull \hbox (badness 2418) in paragraph at lines 5918--5925
\T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z
i4/m/it/10 trellis.focus
Underfull \hbox (badness 10000) in paragraph at lines 5918--5925
\T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar
e used (in com-bi-na-tion with
Underfull \hbox (badness 1259) in paragraph at lines 5918--5925
[][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th
e cho-sen view-port if so re-quested.
[2723] [2724] [2725] [2726]
Underfull \hbox (badness 4242) in paragraph at lines 6218--6223
[]\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li
s pa-ram-e-
Underfull \hbox (badness 2529) in paragraph at lines 6218--6223
\T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there
 is no group-ing vari-able, oth-er-wise
[2727] [2728]
Underfull \hbox (badness 2310) in paragraph at lines 6334--6339
[]\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/
10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round
 if
[2729] [2730] [2731] [2732] [2733] [2734] [2735] [2736] [2737] [2738] [2739]
Underfull \hbox (badness 3168) in paragraph at lines 7116--7120
\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U
se
[2740] [2741] [2742] [2743]
Underfull \hbox (badness 2012) in paragraph at lines 7387--7390
[]\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu
-ally passed on to
[2744] [2745]
Underfull \hbox (badness 3333) in paragraph at lines 7559--7561
[]\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol
 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing
[2746] [2747] [2748]
Underfull \vbox (badness 10000) has occurred while \output is active [2749]
[2750] [2751]
Underfull \hbox (badness 1436) in paragraph at lines 7973--7979
[]\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c
al pa-ram-e-ters for
[2752] [2753] [2754] [2755] [2756] [2757] [2758] [2759]
Underfull \hbox (badness 10000) in paragraph at lines 8531--8534
[]\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp
ose \T1/ptm/m/n/10 from
[2760]
Underfull \hbox (badness 1092) in paragraph at lines 8577--8579
[]\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 <Deepayan.Sarkar@R-project.org
> \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally
 con-
[2761] [2762]
Underfull \hbox (badness 3895) in paragraph at lines 8738--8741
[]\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T
1/ptm/m/n/10 has a dif-fer-ent mean-ing in
[2763]
Underfull \hbox (badness 1515) in paragraph at lines 8814--8818
[]\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti
es. If used with
[2764] [2765]
Underfull \hbox (badness 6316) in paragraph at lines 8920--8925
[]\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr
ibed in
Underfull \hbox (badness 5908) in paragraph at lines 8937--8940
[]\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c
omponents.default \T1/ptm/m/n/10 and
[2766] [2767] [2768] [2769]
Overfull \hbox (5.28876pt too wide) in paragraph at lines 9228--9232
[]\T1/ptm/m/n/10 Returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4
/m/it/10 left,right,left.name,right.name,condition
[2770] [2771] [2772] [2773] [2774] [2775] [2776]
Underfull \hbox (badness 2310) in paragraph at lines 9692--9696
[]\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 ,
 \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m
/n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p
tm/m/n/10 ,
Underfull \hbox (badness 3701) in paragraph at lines 9697--9700
[]\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m
/n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa
rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 ,
[2777] [2778] [2779]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.melanoma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9923 \aliasA{melanoma}{H\_melanoma}{melanoma}
                                                [2780] [2781] [2782]
Underfull \hbox (badness 4144) in paragraph at lines 10147--10150
[]\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R
u-ral and Ur-ban Mor-tal-
Underfull \hbox (badness 1509) in paragraph at lines 10147--10150
\T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it
/10 https : / / ruralhealth . und . edu / projects /
[2783] [2784]) (./mgcv-pkg.tex
Chapter 24.
[2785] [2786] [2787]
Underfull \hbox (badness 1142) in paragraph at lines 184--188
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 209--214
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2788] [2789] [2790] [2791]
Underfull \hbox (badness 10000) in paragraph at lines 378--385
[][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m
gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/
n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 smooth.terms[][][]\T1/ptm/m/n/10 ,
Underfull \hbox (badness 7168) in paragraph at lines 378--385
[][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m
/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][]
[]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z
i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][]
\T1/ptm/m/n/10 ,
[2792] [2793] [2794] [2795] [2796]
Underfull \hbox (badness 1406) in paragraph at lines 703--704
[]\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t
ing en-vi-ron-ment vari-able
[2797] [2798] [2799]
Underfull \hbox (badness 1158) in paragraph at lines 813--815
[]\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe
n us-ing pe-nal-ized re-gres-sion
Underfull \hbox (badness 1259) in paragraph at lines 876--877
[]\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro
-duc-tion with R (2nd edi-tion).
[2800] [2801] [2802] [2803] [2804]
Underfull \hbox (badness 1281) in paragraph at lines 1160--1161
[]\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n
/10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt
m/m/n/10 resid-u-als can be ex-tracted. See Klein amd
[2805] [2806]
Underfull \vbox (badness 10000) has occurred while \output is active [2807]
Underfull \vbox (badness 10000) has occurred while \output is active [2808]
[2809]
Underfull \vbox (badness 10000) has occurred while \output is active [2810]
[2811] [2812] [2813] [2814] [2815] [2816] [2817] [2818] [2819] [2820] [2821]
[2822] [2823] [2824] [2825]
Underfull \hbox (badness 1142) in paragraph at lines 2361--2365
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
Underfull \hbox (badness 1043) in paragraph at lines 2387--2392
\T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known 
scale.
[2826] [2827] [2828] [2829] [2830] [2831]
Underfull \vbox (badness 10000) has occurred while \output is active [2832]
Underfull \vbox (badness 10000) has occurred while \output is active [2833]
[2834] [2835] [2836] [2837] [2838] [2839] [2840] [2841] [2842] [2843] [2844]
[2845] [2846] [2847] [2848] [2849]
Underfull \hbox (badness 10000) in paragraph at lines 3822--3826
[]\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/
n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see
[2850] [2851]
Underfull \vbox (badness 10000) has occurred while \output is active [2852]
[2853] [2854]
Underfull \hbox (badness 1184) in paragraph at lines 4108--4112
[]\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix
ed penalty, if
[2855] [2856] [2857] [2858] [2859] [2860] [2861] [2862] [2863] [2864] [2865]
[2866]
Underfull \hbox (badness 1142) in paragraph at lines 4829--4833
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2867]
Underfull \hbox (badness 1231) in paragraph at lines 4933--4935
[]\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since
 it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with
[2868] [2869] [2870]
Underfull \vbox (badness 10000) has occurred while \output is active [2871]
[2872] [2873] [2874]
Underfull \hbox (badness 2181) in paragraph at lines 5377--5378
[]\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic-
tion, used by
[2875] [2876] [2877] [2878] [2879] [2880] [2881]
Underfull \hbox (badness 10000) in paragraph at lines 5766--5767
[]\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(...
,fit=FALSE) \T1/ptm/m/n/10 or
[2882] [2883] [2884] [2885] [2886] [2887] [2888] [2889] [2890] [2891] [2892]
Underfull \hbox (badness 1142) in paragraph at lines 6351--6355
\T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t
aken from
[2893] [2894] [2895]
Underfull \vbox (badness 10000) has occurred while \output is active [2896]
[2897] [2898] [2899]
Underfull \hbox (badness 1087) in paragraph at lines 6723--6724
[]\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet
a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas
e, and if
[2900] [2901]
Underfull \vbox (badness 10000) has occurred while \output is active [2902]
Underfull \vbox (badness 10000) has occurred while \output is active [2903]
[2904] [2905] [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914]
[2915]
Underfull \hbox (badness 1242) in paragraph at lines 7672--7673
[]\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra
nts EP/K005251/1 and
[2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926]
Underfull \hbox (badness 6001) in paragraph at lines 8312--8314
[]\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 <simon.wood@r-project.org> \T1/p
tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's
[2927] [2928] [2929] [2930] [2931] [2932] [2933] [2934] [2935] [2936]
Underfull \vbox (badness 10000) has occurred while \output is active [2937]
[2938]
Underfull \hbox (badness 1038) in paragraph at lines 9061--9064
[]\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim.
pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 9061--9064
\T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId
not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/
it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 ,
[2939]
Underfull \hbox (badness 10000) in paragraph at lines 9117--9120
[]\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z
i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 ,
[2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950]
Underfull \hbox (badness 1852) in paragraph at lines 9790--9793
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and
[2951] [2952] [2953]
Underfull \hbox (badness 1852) in paragraph at lines 9959--9962
[]\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[]
[][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at-
tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and
[2954] [2955]
Underfull \vbox (badness 10000) has occurred while \output is active [2956]
[2957]
Underfull \hbox (badness 1205) in paragraph at lines 10191--10193
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10191--10193
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
Underfull \hbox (badness 1975) in paragraph at lines 10197--10202
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2958]
Underfull \hbox (badness 1205) in paragraph at lines 10281--10283
[]\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a
tes at which
Underfull \hbox (badness 2689) in paragraph at lines 10281--10283
\T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are 
as for
[2959] [2960] [2961]
Underfull \hbox (badness 1253) in paragraph at lines 10480--10482
[]\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion 
cri-te-rion re-ported is one of GCV,
[2962] [2963] [2964] [2965] [2966] [2967]
Underfull \hbox (badness 4792) in paragraph at lines 10741--10744
[]\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/
10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m
/n/10 can be used:
Underfull \hbox (badness 10000) in paragraph at lines 10741--10744
\T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo
th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g.
[2968]
Underfull \hbox (badness 10000) in paragraph at lines 10848--10851
[]\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1
0 "deviance"\T1/ptm/m/n/10 ,
[2969] [2970] [2971] [2972] [2973] [2974] [2975] [2976] [2977] [2978] [2979]
[2980] [2981]
Underfull \vbox (badness 10000) has occurred while \output is active [2982]
Underfull \hbox (badness 3861) in paragraph at lines 11637--11640
[]\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to
 model ma-trix X, or, if
[2983] [2984]
Underfull \hbox (badness 1320) in paragraph at lines 11752--11757
\T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T
1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If
 ma-
[2985]
Underfull \hbox (badness 1975) in paragraph at lines 11858--11863
[]\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f
i-ca-tion ob-jects of class
[2986] [2987]
Underfull \hbox (badness 1762) in paragraph at lines 11947--11959
\T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T
1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr
es-sion splines with
[2988] [2989] [2990]
Underfull \hbox (badness 7667) in paragraph at lines 12159--12165
[][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one
 or two vari-ables, spec-i-fied via terms like
[2991]
Underfull \hbox (badness 10000) in paragraph at lines 12200--12201
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2992] [2993] [2994] [2995]
Underfull \vbox (badness 10000) has occurred while \output is active [2996]
Underfull \hbox (badness 10000) in paragraph at lines 12477--12479
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2997] [2998]
Underfull \hbox (badness 10000) in paragraph at lines 12607--12608
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[2999] [3000] [3001]
Underfull \hbox (badness 1436) in paragraph at lines 12745--12752
\T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i
) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one
[3002] [3003]
Underfull \hbox (badness 10000) in paragraph at lines 12840--12841
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3004] [3005] [3006] [3007] [3008] [3009] [3010] [3011] [3012] [3013]
Underfull \hbox (badness 10000) in paragraph at lines 13441--13447
[]\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a
Underfull \hbox (badness 1292) in paragraph at lines 13441--13447
\T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T
1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note
[3014] [3015] [3016]
Underfull \vbox (badness 10000) has occurred while \output is active [3017]
Underfull \vbox (badness 10000) has occurred while \output is active [3018]
[3019]
Underfull \hbox (badness 10000) in paragraph at lines 13784--13785
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3020] [3021] [3022] [3023]
Underfull \hbox (badness 3895) in paragraph at lines 14044--14047
[][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any
 num-ber of vari-ables, spec-i-fied via terms like
[3024]
Underfull \hbox (badness 10000) in paragraph at lines 14089--14091
[]\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a 
term
[3025] [3026] [3027] [3028] [3029]
Underfull \hbox (badness 1371) in paragraph at lines 14363--14369
[]\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive
 smooths are avail-able (see
Underfull \hbox (badness 10000) in paragraph at lines 14403--14407
[][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p
tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/
zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre
ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n
/10 ,
Underfull \hbox (badness 10000) in paragraph at lines 14403--14407
[][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de
fined.smooth[][][]\T1/ptm/m/n/10 ,
Overfull \hbox (46.8009pt too wide) in paragraph at lines 14403--14407
[][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4
/m/it/10 factor.smooth.interaction[][][] 
[3030] [3031] [3032] [3033]
Underfull \hbox (badness 2326) in paragraph at lines 14608--14615
[]\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied
 us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and
[3034]
Underfull \hbox (badness 2158) in paragraph at lines 14693--14693
[]\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma-
trix from
[3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045]
[3046] [3047] [3048] [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056]
[3057] [3058] [3059] [3060] [3061] [3062]
Underfull \hbox (badness 1796) in paragraph at lines 16345--16348
[]\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/
it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar
[3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071]) (./nlme-pkg.tex
[3072]
Chapter 25.
[3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083]
[3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] [3092] [3093] [3094]
[3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102]
Underfull \hbox (badness 2875) in paragraph at lines 1996--2002
[]\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat-
ing a co-vari-ate
Underfull \hbox (badness 1466) in paragraph at lines 1996--2002
\T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1
0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 ,
[3103] [3104] [3105] [3106]
Underfull \hbox (badness 10000) in paragraph at lines 2258--2264
[][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi
alize.corStruct[][][]\T1/ptm/m/n/10 ,
[3107] [3108] [3109] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117]
[3118] [3119] [3120] [3121pdfTeX warning (ext4): destination with the same iden
tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor
ed
<argument> ...shipout:D \box_use:N \l_shipout_box 
                                                  
l.3194 
       ] [3122] [3123] [3124] [3125] [3126] [3127] [3128] [3129] [3130]
[3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139]
Underfull \hbox (badness 1067) in paragraph at lines 4419--4424
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[3140] [3141] [3142] [3143] [3144] [3145] [3146] [3147] [3148] [3149] [3150]
[3151]
Underfull \hbox (badness 10000) in paragraph at lines 5165--5169
[][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/
m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo
variate.varFunc[][][]\T1/ptm/m/n/10 ,
[3152] [3153] [3154] [3155] [3156] [3157] [3158]
Underfull \hbox (badness 10000) in paragraph at lines 5597--5600
[][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 
,
[3159] [3160] [3161] [3162] [3163] [3164] [3165]
Underfull \hbox (badness 10000) in paragraph at lines 5978--5983
[][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou
psFormula.lme[][][]\T1/ptm/m/n/10 ,
[3166] [3167] [3168] [3169]
Underfull \hbox (badness 1490) in paragraph at lines 6248--6259
[][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC
ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.
gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 ,
[3170]
Underfull \hbox (badness 10000) in paragraph at lines 6312--6314
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3171] [3172] [3173] [3174] [3175] [3176]
Underfull \hbox (badness 10000) in paragraph at lines 6726--6728
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3177] [3178] [3179] [3180]
Underfull \hbox (badness 10000) in paragraph at lines 6999--7006
[][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n
/10 ,
[3181] [3182] [3183] [3184]
Underfull \hbox (badness 10000) in paragraph at lines 7259--7264
[][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/
it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize
.glsStruct[][][]\T1/ptm/m/n/10 ,
[3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195]
[3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203]
Underfull \hbox (badness 10000) in paragraph at lines 8527--8529
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3204]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig
ma}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8578 \aliasA{sigma}{lmeObject}{sigma}
                                        [3205] [3206] [3207] [3208]
Underfull \hbox (badness 10000) in paragraph at lines 8808--8815
[][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[]
[][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi
st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/
10 ,
[3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216]
Underfull \hbox (badness 10000) in paragraph at lines 9330--9337
[][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1
/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T
1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik
.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm
/m/n/10 ,
[3217] [3218] [3219] [3220] [3221]pdfTeX warning (ext4): destination with the s
ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix}
                                                   [3222] [3223] [3224]
[3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233]
Underfull \hbox (badness 1596) in paragraph at lines 10465--10491
[]\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o
f the form
[3234] [3235]
Underfull \hbox (badness 1490) in paragraph at lines 10603--10609
[][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm
e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n
/10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm
eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10
 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 ,
[3236] [3237] [3238] [3239]
Underfull \hbox (badness 10000) in paragraph at lines 10844--10846
[]\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D
e-fault is
[3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250]
[3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261]
[3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] [3270] [3271] [3272]
[3273] [3274] [3275] [3276] [3277] [3278] [3279] [3280] [3281]
Underfull \hbox (badness 1286) in paragraph at lines 13742--13749
[]\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it
/10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or
[3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289]
Underfull \hbox (badness 1215) in paragraph at lines 14288--14290
[]\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis.
 De-faults to
[3290] [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300]
[3301] [3302]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.random.effects}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.15185 ...Extract Random Effects}{random.effects}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.random.effects.1}) has been already us
ed, duplicate ignored
<to be read again> 
                   \relax 
l.15185 ...Extract Random Effects}{random.effects}
                                                   [3303] [3304] [3305]
[3306] [3307] [3308] [3309] [3310] [3311] [3312]
Underfull \hbox (badness 3884) in paragraph at lines 15825--15829
[]\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199
7). Phar-ma-coki-
Underfull \hbox (badness 4846) in paragraph at lines 15825--15829
\T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap
-pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol-
Underfull \hbox (badness 1953) in paragraph at lines 15825--15829
\T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/
it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 /
 35925 /
[3313] [3314]
Underfull \hbox (badness 1067) in paragraph at lines 15937--15942
\T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues
), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to
[3315] [3316] [3317] [3318]
Underfull \hbox (badness 1448) in paragraph at lines 16180--16189
\T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for 
the "raw" resid-u-als (ob-served - fit-ted),
[3319] [3320] [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328]
Underfull \hbox (badness 1728) in paragraph at lines 16885--16888
[]\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou
t-put in the
[3329] [3330] [3331] [3332] [3333]
Underfull \hbox (badness 8056) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/
m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of
Underfull \hbox (badness 10000) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/
m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural
Underfull \hbox (badness 5756) in paragraph at lines 17220--17229
\T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T
1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for
[3334] [3335] [3336] [3337] [3338]
Underfull \hbox (badness 10000) in paragraph at lines 17542--17550
[][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons
tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/
10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi
xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , []
[]\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 ,
[3339] [3340] [3341] [3342] [3343] [3344] [3345] [3346] [3347] [3348]
Underfull \hbox (badness 10000) in paragraph at lines 18252--18262
[][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1
0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[
][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1
0 ,
Underfull \hbox (badness 10000) in paragraph at lines 18252--18262
[][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it
/10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa
ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10
 ,
[3349] [3350] [3351] [3352] [3353]
Underfull \hbox (badness 5036) in paragraph at lines 18576--18585
[][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari
ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/
m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4
/m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 ,
[3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364]
[3365] [3366]) (./nnet-pkg.tex
Chapter 26.
pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom}
) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.multinom.1}) has been already used, du
plicate ignored
<to be read again> 
                   \relax 
l.47 ...t Multinomial Log-linear Models}{multinom}
                                                   [3367]
Underfull \hbox (badness 1117) in paragraph at lines 79--88
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo
rm \T1/zi4/m/it/10 response ~
[3368] [3369] [3370] [3371] [3372] [3373] [3374]) (./rpart-pkg.tex
Chapter 27.
[3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385]
[3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] [3394] [3395] [3396]
[3397] [3398] [3399] [3400] [3401] [3402] [3403]) (./spatial-pkg.tex [3404]
Chapter 28.
[3405] [3406] [3407] [3408] [3409] [3410]
Underfull \hbox (badness 10000) in paragraph at lines 423--427
[3411] [3412] [3413] [3414] [3415] [3416] [3417] [3418] [3419] [3420] [3421]
[3422] [3423]) (./survival-pkg.tex [3424]
Chapter 29.
[3425] [3426] [3427] [3428]
Underfull \hbox (badness 6412) in paragraph at lines 282--284
[]\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as 
long as
[3429] [3430]pdfTeX warning (ext4): destination with the same identifier (name{
Rfn.aml}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.382 ... Myelogenous Leukemia survival data}{aml}
                                                  pdfTeX warning (ext4): destin
ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica
te ignored
<to be read again> 
                   \relax 
l.382 ... Myelogenous Leukemia survival data}{aml}
                                                   [3431] [3432] [3433]
[3434]
Overfull \vbox (3.85637pt too high) has occurred while \output is active
[3435] [3436] [3437] [3438] [3439] [3440] [3441]
Underfull \hbox (badness 1097) in paragraph at lines 1106--1108
[]\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi
al and negative-binomial data.
[3442] [3443] [3444]pdfTeX warning (ext4): destination with the same identifier
 (name{Rfn.colon}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1308 ...erapy for Stage B/C colon cancer}{colon}
                                                   [3445]
Underfull \hbox (badness 10000) in paragraph at lines 1356--1360
[]\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea
led by
[3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453]
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
[]\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f
ol-low the ad-vice
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
\T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T
1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the
Underfull \hbox (badness 10000) in paragraph at lines 1940--1955
\T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S
urv(time,status) ~ age +
Underfull \hbox (badness 2119) in paragraph at lines 1940--1955
\T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i
s un-nec-es-sary: ar-gu-ments within the
[3454] [3455] [3456] [3457] [3458] [3459] [3460] [3461] [3462] [3463] [3464]
[3465] [3466] [3467] [3468] [3469]
Overfull \vbox (31.18587pt too high) has occurred while \output is active
[3470] [3471] [3472]
Underfull \hbox (badness 1389) in paragraph at lines 3300--3302
[]\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan
-Meier plot gen-er-ated with
[3473] [3474] [3475] [3476]
Overfull \hbox (467.89665pt too wide) in alignment at lines 3586--3586
 [] [] 
Underfull \vbox (badness 10000) has occurred while \output is active [3477]
Overfull \vbox (8.56093pt too high) has occurred while \output is active
[3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] [3488]
[3489] [3490] [3491]
Overfull \vbox (11.01616pt too high) has occurred while \output is active
[3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502]
Underfull \hbox (badness 5274) in paragraph at lines 5316--5318
[]\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m
/n/10 , which is the re-sult of the
[3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513]
[3514] [3515] [3516] [3517] [3518] [3519]
Underfull \hbox (badness 1281) in paragraph at lines 6540--6543
[]\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response
"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d
fbeta"\T1/ptm/m/n/10 ,
[3520] [3521] [3522] [3523] [3524] [3525] [3526] [3527]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.solder}) has been already used, d
uplicate ignored
<to be read again> 
                   \relax 
l.7092 ...ata from a soldering experiment}{solder}
                                                   [3528] [3529] [3530]
[3531] [3532] [3533] [3534] [3535] [3536] [3537] [3538] [3539] [3540] [3541]
[3542] [3543] [3544] [3545] [3546]
Underfull \hbox (badness 10000) in paragraph at lines 8422--8431
[]\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the
 form
[3547] [3548]
Underfull \hbox (badness 1038) in paragraph at lines 8578--8584
\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d
icted sur-vival
[3549] [3550] [3551] [3552] [3553]
Underfull \hbox (badness 10000) in paragraph at lines 8941--8946
[][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10
 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T
1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 ,
[3554] [3555] [3556] [3557] [3558] [3559] [3560] [3561] [3562] [3563] [3564]
[3565]
Underfull \hbox (badness 1354) in paragraph at lines 9860--9864
[]\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th
e time range
[3566] [3567] [3568] [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576]
[3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587]
[3588] [3589]) [3590] (./fullrefman.ind [3591] [3592] [3593] [3594] [3595]
[3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606]
[3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615]
Overfull \hbox (8.3567pt too wide) in paragraph at lines 2607--2609
[]| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
[3616] [3617] [3618] [3619] [3620] [3621]
Overfull \hbox (8.3567pt too wide) in paragraph at lines 3242--3244
[]| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , 
[3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4503--4505
[]\T1/zi4/m/it/10 [,CsparseMatrix,index,index,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4505--4507
[]\T1/zi4/m/it/10 [,CsparseMatrix,index,missing,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4507--4509
[]\T1/zi4/m/it/10 [,CsparseMatrix,missing,index,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4517--4519
[]\T1/zi4/m/it/10 [,Matrix,lMatrix,missing,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4521--4523
[]\T1/zi4/m/it/10 [,Matrix,logical,missing,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4525--4527
[]\T1/zi4/m/it/10 [,Matrix,matrix,missing,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4531--4533
[]\T1/zi4/m/it/10 [,Matrix,missing,missing,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4533--4535
[]\T1/zi4/m/it/10 [,Matrix,missing,missing,missing-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4535--4537
[]\T1/zi4/m/it/10 [,TsparseMatrix,index,index,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4537--4539
[]\T1/zi4/m/it/10 [,TsparseMatrix,index,missing,logical-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4539--4541
[]\T1/zi4/m/it/10 [,TsparseMatrix,missing,index,logical-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4547--4549
[]\T1/zi4/m/it/10 [,denseMatrix,index,index,logical-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4549--4551
[]\T1/zi4/m/it/10 [,denseMatrix,index,missing,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4551--4553
[]\T1/zi4/m/it/10 [,denseMatrix,matrix,missing,ANY-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4553--4555
[]\T1/zi4/m/it/10 [,denseMatrix,matrix,missing,missing-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4555--4557
[]\T1/zi4/m/it/10 [,denseMatrix,missing,index,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4557--4559
[]\T1/zi4/m/it/10 [,diagonalMatrix,index,index,logical-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 4559--4561
[]\T1/zi4/m/it/10 [,diagonalMatrix,index,missing,logical-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 4561--4563
[]\T1/zi4/m/it/10 [,diagonalMatrix,missing,index,logical-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4563--4565
[]\T1/zi4/m/it/10 [,indMatrix,index,missing,logical-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 4565--4567
[]\T1/zi4/m/it/10 [,sparseMatrix,index,index,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4567--4569
[]\T1/zi4/m/it/10 [,sparseMatrix,index,missing,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4569--4571
[]\T1/zi4/m/it/10 [,sparseMatrix,missing,index,logical-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4573--4575
[]\T1/zi4/m/it/10 [,sparseVector,lsparseVector,ANY,ANY-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4575--4577
[]\T1/zi4/m/it/10 [,sparseVector,nsparseVector,ANY,ANY-method 
[3632]
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4651--4653
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,Matrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4653--4655
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,index,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4655--4657
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,index,sparseVector-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4657--4659
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,missing,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4659--4661
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,index,missing,sparseVector-method 
Overfull \hbox (85.8567pt too wide) in paragraph at lines 4661--4663
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,ldenseMatrix,missing,replValue-method 
Overfull \hbox (90.8567pt too wide) in paragraph at lines 4663--4665
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,lsparseMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4665--4667
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4667--4669
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,missing,index,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4669--4671
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,missing,index,sparseVector-method 
Overfull \hbox (85.8567pt too wide) in paragraph at lines 4671--4673
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,ndenseMatrix,missing,replValue-method 
Overfull \hbox (90.8567pt too wide) in paragraph at lines 4673--4675
[]\T1/zi4/m/it/10 [<-,CsparseMatrix,nsparseMatrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4685--4687
[]\T1/zi4/m/it/10 [<-,Matrix,ldenseMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4687--4689
[]\T1/zi4/m/it/10 [<-,Matrix,lsparseMatrix,missing,replValue-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4689--4691
[]\T1/zi4/m/it/10 [<-,Matrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4695--4697
[]\T1/zi4/m/it/10 [<-,Matrix,ndenseMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4697--4699
[]\T1/zi4/m/it/10 [<-,Matrix,nsparseMatrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4699--4701
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,index,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4701--4703
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,index,sparseVector-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4703--4705
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,missing,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4705--4707
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,index,missing,sparseVector-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4707--4709
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4709--4711
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,missing,index,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4711--4713
[]\T1/zi4/m/it/10 [<-,RsparseMatrix,missing,index,sparseVector-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4713--4715
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,Matrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4715--4717
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,index,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4717--4719
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,index,sparseVector-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4719--4721
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,missing,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4721--4723
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,index,missing,sparseVector-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4723--4725
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,lMatrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4725--4727
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,matrix,missing,replValue-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4727--4729
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,missing,index,replValue-method 
Overfull \hbox (65.8567pt too wide) in paragraph at lines 4729--4731
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,missing,index,sparseVector-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4731--4733
[]\T1/zi4/m/it/10 [<-,TsparseMatrix,nMatrix,missing,replValue-method 
[3633]
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4733--4735
[]\T1/zi4/m/it/10 [<-,denseMatrix,index,index,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4735--4737
[]\T1/zi4/m/it/10 [<-,denseMatrix,index,missing,replValue-method 
Overfull \hbox (45.8567pt too wide) in paragraph at lines 4737--4739
[]\T1/zi4/m/it/10 [<-,denseMatrix,matrix,missing,replValue-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 4739--4741
[]\T1/zi4/m/it/10 [<-,denseMatrix,missing,index,replValue-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 4741--4743
[]\T1/zi4/m/it/10 [<-,denseMatrix,missing,missing,ANY-method 
Overfull \hbox (45.8567pt too wide) in paragraph at lines 4743--4745
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,index,replValue-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4745--4747
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,index,sparseMatrix-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4747--4749
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,index,sparseVector-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4749--4751
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,missing,replValue-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4751--4753
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,missing,sparseMatrix-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4753--4755
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,index,missing,sparseVector-method 
Overfull \hbox (60.8567pt too wide) in paragraph at lines 4755--4757
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,matrix,missing,replValue-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4757--4759
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,index,replValue-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4759--4761
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,index,sparseMatrix-method 
Overfull \hbox (70.8567pt too wide) in paragraph at lines 4761--4763
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,index,sparseVector-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 4763--4765
[]\T1/zi4/m/it/10 [<-,diagonalMatrix,missing,missing,ANY-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4767--4769
[]\T1/zi4/m/it/10 [<-,indMatrix,missing,index,ANY-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4769--4771
[]\T1/zi4/m/it/10 [<-,indMatrix,missing,missing,ANY-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 4771--4773
[]\T1/zi4/m/it/10 [<-,sparseMatrix,ANY,ANY,sparseMatrix-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4773--4775
[]\T1/zi4/m/it/10 [<-,sparseMatrix,ANY,missing,sparseMatrix-method 
Overfull \hbox (50.8567pt too wide) in paragraph at lines 4775--4777
[]\T1/zi4/m/it/10 [<-,sparseMatrix,missing,ANY,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 4777--4779
[]\T1/zi4/m/it/10 [<-,sparseMatrix,missing,missing,ANY-method 
Overfull \hbox (55.8567pt too wide) in paragraph at lines 4779--4781
[]\T1/zi4/m/it/10 [<-,sparseVector,index,missing,replValueSp-method 
Overfull \hbox (90.8567pt too wide) in paragraph at lines 4781--4783
[]\T1/zi4/m/it/10 [<-,sparseVector,sparseVector,missing,replValueSp-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4863--4865
[]\T1/zi4/m/it/10 %*%,CsparseMatrix,CsparseMatrix-method 
[3634]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4867--4869
[]\T1/zi4/m/it/10 %*%,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4889--4891
[]\T1/zi4/m/it/10 %*%,TsparseMatrix,TsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 4927--4929
[]\T1/zi4/m/it/10 %*%,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 4933--4935
[]\T1/zi4/m/it/10 %*%,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4939--4941
[]\T1/zi4/m/it/10 %*%,diagonalMatrix,sparseMatrix-method 
[3635]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 4995--4997
[]\T1/zi4/m/it/10 %*%,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5045--5047
[]\T1/zi4/m/it/10 %*%,nsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5061--5063
[]\T1/zi4/m/it/10 %*%,sparseMatrix,diagonalMatrix-method 
[3636]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5119--5121
[]\T1/zi4/m/it/10 %&%,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5125--5127
[]\T1/zi4/m/it/10 %&%,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5127--5129
[]\T1/zi4/m/it/10 %&%,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5131--5133
[]\T1/zi4/m/it/10 %&%,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5145--5147
[]\T1/zi4/m/it/10 %&%,nCsparseMatrix,nCsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5147--5149
[]\T1/zi4/m/it/10 %&%,nCsparseMatrix,nsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 5155--5157
[]\T1/zi4/m/it/10 %&%,nsparseMatrix,nCsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5159--5161
[]\T1/zi4/m/it/10 %&%,nsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5163--5165
[]\T1/zi4/m/it/10 %&%,sparseMatrix,diagonalMatrix-method 
[3637]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 5346--5348
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3638]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5511--5513
[]\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5513--5515
[]\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5517--5519
[]\T1/zi4/m/it/10 all.equal,sparseVector,sparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 5519--5521
[]\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method 
[3639] [3640]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5780--5782
[]\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5784--5786
[]\T1/zi4/m/it/10 Arith,ddenseMatrix,ddenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5790--5792
[]\T1/zi4/m/it/10 Arith,ddenseMatrix,sparseVector-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 5826--5828
[]\T1/zi4/m/it/10 Arith,dsparseVector,dsparseVector-method 
[3641]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5904--5906
[]\T1/zi4/m/it/10 Arith,sparseVector,ddenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 5908--5910
[]\T1/zi4/m/it/10 Arith,sparseVector,sparseVector-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 5910--5912
[]\T1/zi4/m/it/10 Arith,triangularMatrix,diagonalMatrix-method 
[3642] [3643] [3644]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 6567--6569
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3645] [3646] [3647]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 7233--7235
[]\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 7235--7237
[]\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 7265--7267
[]\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 7267--7269
[]\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 7273--7275
[]\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method 
[3648] [3649] [3650] [3651]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8029--8031
[]\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8031--8033
[]\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8041--8043
[]\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8045--8047
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8049--8051
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8051--8053
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8053--8055
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8055--8057
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8059--8061
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8061--8063
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,sparseVector-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 8063--8065
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,symmetricMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8065--8067
[]\T1/zi4/m/it/10 coerce,CsparseMatrix,TsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8085--8087
[]\T1/zi4/m/it/10 coerce,ddiMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8087--8089
[]\T1/zi4/m/it/10 coerce,ddiMatrix,triangularMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8091--8093
[]\T1/zi4/m/it/10 coerce,denseMatrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8093--8095
[]\T1/zi4/m/it/10 coerce,denseMatrix,generalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8095--8097
[]\T1/zi4/m/it/10 coerce,denseMatrix,RsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8097--8099
[]\T1/zi4/m/it/10 coerce,denseMatrix,sparseMatrix-method 
[3652]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8099--8101
[]\T1/zi4/m/it/10 coerce,denseMatrix,symmetricMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8101--8103
[]\T1/zi4/m/it/10 coerce,denseMatrix,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8139--8141
[]\T1/zi4/m/it/10 coerce,dgeMatrix,triangularMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8159--8161
[]\T1/zi4/m/it/10 coerce,dgTMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8161--8163
[]\T1/zi4/m/it/10 coerce,dgTMatrix,triangularMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8163--8165
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,denseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 8165--8167
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,generalMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 8171--8173
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,nsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8173--8175
[]\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method 
[3653]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8221--8223
[]\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method 
[3654]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8373--8375
[]\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8375--8377
[]\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8407--8409
[]\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method 
[3655]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8421--8423
[]\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8423--8425
[]\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8449--8451
[]\T1/zi4/m/it/10 coerce,lsparseMatrix,dsparseMatrix-method 
[3656] [3657]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8635--8637
[]\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8643--8645
[]\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8645--8647
[]\T1/zi4/m/it/10 coerce,matrix.csc,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8651--8653
[]\T1/zi4/m/it/10 coerce,matrix.csc,TsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8653--8655
[]\T1/zi4/m/it/10 coerce,matrix.csr,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8661--8663
[]\T1/zi4/m/it/10 coerce,matrix.csr,RsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 8663--8665
[]\T1/zi4/m/it/10 coerce,matrix.csr,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8665--8667
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8667--8669
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,ldenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8671--8673
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,nsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8673--8675
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,sparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8675--8677
[]\T1/zi4/m/it/10 coerce,ndenseMatrix,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8715--8717
[]\T1/zi4/m/it/10 coerce,ngeMatrix,triangularMatrix-method 
[3658]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8739--8741
[]\T1/zi4/m/it/10 coerce,ngTMatrix,symmetricMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8741--8743
[]\T1/zi4/m/it/10 coerce,ngTMatrix,triangularMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8773--8775
[]\T1/zi4/m/it/10 coerce,nsparseMatrix,dsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8775--8777
[]\T1/zi4/m/it/10 coerce,nsparseVector,dsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8777--8779
[]\T1/zi4/m/it/10 coerce,nsparseVector,isparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8779--8781
[]\T1/zi4/m/it/10 coerce,nsparseVector,lsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8781--8783
[]\T1/zi4/m/it/10 coerce,nsparseVector,zsparseVector-method 
[3659]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8899--8901
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8901--8903
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8907--8909
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,dsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8909--8911
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,generalMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8913--8915
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,lsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8919--8921
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,nsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8921--8923
[]\T1/zi4/m/it/10 coerce,RsparseMatrix,TsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8927--8929
[]\T1/zi4/m/it/10 coerce,sparseMatrix,generalMatrix-method 
[3660]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8937--8939
[]\T1/zi4/m/it/10 coerce,sparseMatrix,RsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8939--8941
[]\T1/zi4/m/it/10 coerce,sparseMatrix,sparseVector-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 8941--8943
[]\T1/zi4/m/it/10 coerce,sparseMatrix,symmetricMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 8943--8945
[]\T1/zi4/m/it/10 coerce,sparseMatrix,triangularMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8945--8947
[]\T1/zi4/m/it/10 coerce,sparseVector,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 8955--8957
[]\T1/zi4/m/it/10 coerce,sparseVector,sparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8957--8959
[]\T1/zi4/m/it/10 coerce,sparseVector,TsparseMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 8963--8965
[]\T1/zi4/m/it/10 coerce,triangularMatrix,symmetricMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8965--8967
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,CsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8971--8973
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,lsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8977--8979
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,nsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 8979--8981
[]\T1/zi4/m/it/10 coerce,TsparseMatrix,sparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8981--8983
[]\T1/zi4/m/it/10 coerce,xsparseVector,dsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8983--8985
[]\T1/zi4/m/it/10 coerce,xsparseVector,isparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8985--8987
[]\T1/zi4/m/it/10 coerce,xsparseVector,lsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8987--8989
[]\T1/zi4/m/it/10 coerce,xsparseVector,nsparseVector-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 8989--8991
[]\T1/zi4/m/it/10 coerce,xsparseVector,zsparseVector-method 
[3661]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9127--9129
[]\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9145--9147
[]\T1/zi4/m/it/10 Compare,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 9161--9163
[]\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method 
[3662] [3663] [3664]
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9689--9691
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9691--9693
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,ddenseMatrix-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 9693--9695
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9697--9699
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9699--9701
[]\T1/zi4/m/it/10 crossprod,CsparseMatrix,numLike-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9701--9703
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,CsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9703--9705
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,ddenseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9705--9707
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,dgCMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9707--9709
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,dsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9709--9711
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,ldenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9715--9717
[]\T1/zi4/m/it/10 crossprod,ddenseMatrix,ndenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 9721--9723
[]\T1/zi4/m/it/10 crossprod,dgeMatrix,dsparseMatrix-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 9729--9731
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 9731--9733
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,dgeMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 9733--9735
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 9735--9737
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,lgeMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9737--9739
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9739--9741
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9741--9743
[]\T1/zi4/m/it/10 crossprod,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9743--9745
[]\T1/zi4/m/it/10 crossprod,dsparseMatrix,ddenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 9745--9747
[]\T1/zi4/m/it/10 crossprod,dsparseMatrix,dgeMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9747--9749
[]\T1/zi4/m/it/10 crossprod,dtpMatrix,ddenseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9751--9753
[]\T1/zi4/m/it/10 crossprod,dtrMatrix,ddenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9767--9769
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,ddenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9769--9771
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,ldenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9771--9773
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,lsparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9777--9779
[]\T1/zi4/m/it/10 crossprod,ldenseMatrix,ndenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9783--9785
[]\T1/zi4/m/it/10 crossprod,lsparseMatrix,ldenseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9785--9787
[]\T1/zi4/m/it/10 crossprod,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9787--9789
[]\T1/zi4/m/it/10 crossprod,lsparseMatrix,missing-method 
[3665]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9797--9799
[]\T1/zi4/m/it/10 crossprod,matrix,diagonalMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9815--9817
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,ddenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9817--9819
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,ldenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9823--9825
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,ndenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9825--9827
[]\T1/zi4/m/it/10 crossprod,ndenseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9831--9833
[]\T1/zi4/m/it/10 crossprod,nsparseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 9833--9835
[]\T1/zi4/m/it/10 crossprod,nsparseMatrix,ndenseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9835--9837
[]\T1/zi4/m/it/10 crossprod,nsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9839--9841
[]\T1/zi4/m/it/10 crossprod,numLike,CsparseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9855--9857
[]\T1/zi4/m/it/10 crossprod,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 9863--9865
[]\T1/zi4/m/it/10 crossprod,sparseVector,sparseVector-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 9867--9869
[]\T1/zi4/m/it/10 crossprod,symmetricMatrix,Matrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 9869--9871
[]\T1/zi4/m/it/10 crossprod,symmetricMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 9875--9877
[]\T1/zi4/m/it/10 crossprod,TsparseMatrix,missing-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 9877--9879
[]\T1/zi4/m/it/10 crossprod,TsparseMatrix,TsparseMatrix-method 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9911--9913
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3666]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9972--9974
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9977--9979
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 9985--9987
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3667]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10326--10328
[]\T1/zi4/m/it/10 determinant,ddenseMatrix,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10328--10330
[]\T1/zi4/m/it/10 determinant,ddenseMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 10336--10338
[]\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 10350--10352
[]\T1/zi4/m/it/10 determinant,dsparseMatrix,logical-method 
[3668]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10370--10372
[]\T1/zi4/m/it/10 determinant,sparseMatrix,logical-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 10372--10374
[]\T1/zi4/m/it/10 determinant,sparseMatrix,missing-method 
[3669] [3670] [3671]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 11102--11104
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3672] [3673]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 11620--11622
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3674] [3675]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11964--11966
[]\T1/zi4/m/it/10 forceSymmetric,corMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11966--11968
[]\T1/zi4/m/it/10 forceSymmetric,corMatrix,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11968--11970
[]\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,ANY-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 11970--11972
[]\T1/zi4/m/it/10 forceSymmetric,denseMatrix,character-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11972--11974
[]\T1/zi4/m/it/10 forceSymmetric,denseMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11974--11976
[]\T1/zi4/m/it/10 forceSymmetric,dpoMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11976--11978
[]\T1/zi4/m/it/10 forceSymmetric,dpoMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11978--11980
[]\T1/zi4/m/it/10 forceSymmetric,dppMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11980--11982
[]\T1/zi4/m/it/10 forceSymmetric,dppMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11982--11984
[]\T1/zi4/m/it/10 forceSymmetric,dsCMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11984--11986
[]\T1/zi4/m/it/10 forceSymmetric,dsCMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11986--11988
[]\T1/zi4/m/it/10 forceSymmetric,dspMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11988--11990
[]\T1/zi4/m/it/10 forceSymmetric,dspMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11990--11992
[]\T1/zi4/m/it/10 forceSymmetric,dsRMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11992--11994
[]\T1/zi4/m/it/10 forceSymmetric,dsRMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11994--11996
[]\T1/zi4/m/it/10 forceSymmetric,dsTMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 11996--11998
[]\T1/zi4/m/it/10 forceSymmetric,dsTMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 11998--12000
[]\T1/zi4/m/it/10 forceSymmetric,dsyMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12000--12002
[]\T1/zi4/m/it/10 forceSymmetric,dsyMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12002--12004
[]\T1/zi4/m/it/10 forceSymmetric,lsCMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12004--12006
[]\T1/zi4/m/it/10 forceSymmetric,lsCMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12006--12008
[]\T1/zi4/m/it/10 forceSymmetric,lspMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12008--12010
[]\T1/zi4/m/it/10 forceSymmetric,lspMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12010--12012
[]\T1/zi4/m/it/10 forceSymmetric,lsRMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12012--12014
[]\T1/zi4/m/it/10 forceSymmetric,lsRMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12014--12016
[]\T1/zi4/m/it/10 forceSymmetric,lsTMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12016--12018
[]\T1/zi4/m/it/10 forceSymmetric,lsTMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12018--12020
[]\T1/zi4/m/it/10 forceSymmetric,lsyMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12020--12022
[]\T1/zi4/m/it/10 forceSymmetric,lsyMatrix,missing-method 
[3676]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12026--12028
[]\T1/zi4/m/it/10 forceSymmetric,nsCMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12028--12030
[]\T1/zi4/m/it/10 forceSymmetric,nsCMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12030--12032
[]\T1/zi4/m/it/10 forceSymmetric,nspMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12032--12034
[]\T1/zi4/m/it/10 forceSymmetric,nspMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12034--12036
[]\T1/zi4/m/it/10 forceSymmetric,nsRMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12036--12038
[]\T1/zi4/m/it/10 forceSymmetric,nsRMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12038--12040
[]\T1/zi4/m/it/10 forceSymmetric,nsTMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12040--12042
[]\T1/zi4/m/it/10 forceSymmetric,nsTMatrix,missing-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 12042--12044
[]\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,character-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 12044--12046
[]\T1/zi4/m/it/10 forceSymmetric,nsyMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 12046--12048
[]\T1/zi4/m/it/10 forceSymmetric,sparseMatrix,ANY-method 
[3677] [3678] [3679]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 12981--12983
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3680] [3681] [3682] [3683] [3684] [3685] [3686] [3687]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 14517--14519
[]\T1/zi4/m/it/10 kronecker,diagonalMatrix,Matrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 14519--14521
[]\T1/zi4/m/it/10 kronecker,dsparseMatrix,dsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 14529--14531
[]\T1/zi4/m/it/10 kronecker,Matrix,diagonalMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 14533--14535
[]\T1/zi4/m/it/10 kronecker,sparseMatrix,TsparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 14535--14537
[]\T1/zi4/m/it/10 kronecker,TsparseMatrix,sparseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 14537--14539
[]\T1/zi4/m/it/10 kronecker,TsparseMatrix,TsparseMatrix-method 
[3688] [3689] [3690]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15350--15352
[]\T1/zi4/m/it/10 Logic,CsparseMatrix,CsparseMatrix-method 
[3691]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 15358--15360
[]\T1/zi4/m/it/10 Logic,ldenseMatrix,lsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 15382--15384
[]\T1/zi4/m/it/10 Logic,lsparseMatrix,ldenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15384--15386
[]\T1/zi4/m/it/10 Logic,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15386--15388
[]\T1/zi4/m/it/10 Logic,lsparseVector,lsparseVector-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 15408--15410
[]\T1/zi4/m/it/10 Logic,nsparseVector,nsparseVector-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 15422--15424
[]\T1/zi4/m/it/10 Logic,sparseVector,sparseVector-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 15424--15426
[]\T1/zi4/m/it/10 Logic,triangularMatrix,diagonalMatrix-method 
[3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 17360--17362
[]\T1/zi4/m/it/10 Ops,diagonalMatrix,diagonalMatrix-method 
[3700]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17362--17364
[]\T1/zi4/m/it/10 Ops,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 17364--17366
[]\T1/zi4/m/it/10 Ops,diagonalMatrix,triangularMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17384--17386
[]\T1/zi4/m/it/10 Ops,dsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17422--17424
[]\T1/zi4/m/it/10 Ops,lsparseMatrix,lsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17424--17426
[]\T1/zi4/m/it/10 Ops,lsparseMatrix,nsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17456--17458
[]\T1/zi4/m/it/10 Ops,nsparseMatrix,dsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17458--17460
[]\T1/zi4/m/it/10 Ops,nsparseMatrix,lsparseMatrix-method 
[3701]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 17482--17484
[]\T1/zi4/m/it/10 Ops,sparseMatrix,diagonalMatrix-method 
[3702]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 17703--17705
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (33.3567pt too wide) in paragraph at lines 17729--17731
[]\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , 
[3703] [3704] [3705] [3706] [3707]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19035--19037
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19042--19044
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19044--19046
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19046--19048
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (20.01662pt too wide) in paragraph at lines 19048--19050
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1
0 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 19052--19054
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.re.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (20.01662pt too wide) in paragraph at lines 19058--19060
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1
0 )\T1/ptm/m/n/10 , 
[3708] [3709] [3710] [3711] [3712]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 19970--19972
[]\T1/zi4/m/it/10 qr.fitted,sparseQR,ddenseMatrix-method 
[3713]
Overfull \hbox (20.8567pt too wide) in paragraph at lines 20141--20143
[]\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE 
[3714]
Overfull \hbox (0.8567pt too wide) in paragraph at lines 20371--20373
[]\T1/zi4/m/it/10 rbind2,denseMatrix,sparseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 20373--20375
[]\T1/zi4/m/it/10 rbind2,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 20405--20407
[]\T1/zi4/m/it/10 rbind2,sparseMatrix,denseMatrix-method 
Overfull \hbox (15.8567pt too wide) in paragraph at lines 20407--20409
[]\T1/zi4/m/it/10 rbind2,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 20413--20415
[]\T1/zi4/m/it/10 rbind2,sparseMatrix,sparseMatrix-method 
[3715] [3716] [3717] [3718] [3719] [3720] [3721] [3722] [3723]
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22143--22145
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22145--22147
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22148--22150
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22163--22165
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22169--22171
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.so.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
Overfull \hbox (15.01662pt too wide) in paragraph at lines 22177--22179
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10
 )\T1/ptm/m/n/10 , 
[3724] [3725]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 22397--22399
[]\T1/zi4/m/it/10 solve,MatrixFactorization,missing-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 22399--22401
[]\T1/zi4/m/it/10 solve,MatrixFactorization,numeric-method 
Overfull \hbox (20.01662pt too wide) in paragraph at lines 22559--22561
\T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1
0 )\T1/ptm/m/n/10 , 
[3726] [3727]
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23002--23004
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23004--23006
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_results 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23006--23008
[]\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings 
[3728] [3729] [3730] [3731] [3732]
Overfull \hbox (35.8567pt too wide) in paragraph at lines 23898--23900
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,CsparseMatrix-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 23900--23902
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,ddenseMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 23902--23904
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,diagonalMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23904--23906
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,matrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23906--23908
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23908--23910
[]\T1/zi4/m/it/10 tcrossprod,CsparseMatrix,numLike-method 
Overfull \hbox (30.8567pt too wide) in paragraph at lines 23910--23912
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,CsparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23912--23914
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,ddenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23914--23916
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,dsCMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23916--23918
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,dtrMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23918--23920
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,ldenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23920--23922
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,lsCMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23924--23926
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23926--23928
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,ndenseMatrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23928--23930
[]\T1/zi4/m/it/10 tcrossprod,ddenseMatrix,nsCMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 23932--23934
[]\T1/zi4/m/it/10 tcrossprod,dgeMatrix,diagonalMatrix-method 
Overfull \hbox (40.8567pt too wide) in paragraph at lines 23940--23942
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,CsparseMatrix-method 
Overfull \hbox (45.8567pt too wide) in paragraph at lines 23942--23944
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23944--23946
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,matrix-method 
Overfull \hbox (10.8567pt too wide) in paragraph at lines 23946--23948
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,missing-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 23948--23950
[]\T1/zi4/m/it/10 tcrossprod,diagonalMatrix,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23956--23958
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,ddenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23958--23960
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,ldenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23962--23964
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 23964--23966
[]\T1/zi4/m/it/10 tcrossprod,ldenseMatrix,ndenseMatrix-method 
Overfull \hbox (20.8567pt too wide) in paragraph at lines 23968--23970
[]\T1/zi4/m/it/10 tcrossprod,lgeMatrix,diagonalMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23972--23974
[]\T1/zi4/m/it/10 tcrossprod,lsparseMatrix,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 23976--23978
[]\T1/zi4/m/it/10 tcrossprod,matrix,CsparseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 23980--23982
[]\T1/zi4/m/it/10 tcrossprod,matrix,diagonalMatrix-method 
[3733]
Overfull \hbox (10.8567pt too wide) in paragraph at lines 24008--24010
[]\T1/zi4/m/it/10 tcrossprod,Matrix,symmetricMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24010--24012
[]\T1/zi4/m/it/10 tcrossprod,Matrix,TsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24012--24014
[]\T1/zi4/m/it/10 tcrossprod,mMatrix,sparseVector-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24014--24016
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,ddenseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24016--24018
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,ldenseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24020--24022
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,missing-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24022--24024
[]\T1/zi4/m/it/10 tcrossprod,ndenseMatrix,ndenseMatrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 24028--24030
[]\T1/zi4/m/it/10 tcrossprod,nsparseMatrix,missing-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 24030--24032
[]\T1/zi4/m/it/10 tcrossprod,numLike,CsparseMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24036--24038
[]\T1/zi4/m/it/10 tcrossprod,numLike,sparseVector-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 24042--24044
[]\T1/zi4/m/it/10 tcrossprod,sparseMatrix,diagonalMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24044--24046
[]\T1/zi4/m/it/10 tcrossprod,sparseMatrix,sparseVector-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24046--24048
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,missing-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24048--24050
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,mMatrix-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24050--24052
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,numLike-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24052--24054
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,sparseMatrix-method 
Overfull \hbox (25.8567pt too wide) in paragraph at lines 24054--24056
[]\T1/zi4/m/it/10 tcrossprod,sparseVector,sparseVector-method 
Overfull \hbox (0.8567pt too wide) in paragraph at lines 24058--24060
[]\T1/zi4/m/it/10 tcrossprod,TsparseMatrix,Matrix-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 24060--24062
[]\T1/zi4/m/it/10 tcrossprod,TsparseMatrix,missing-method 
Overfull \hbox (35.8567pt too wide) in paragraph at lines 24062--24064
[]\T1/zi4/m/it/10 tcrossprod,TsparseMatrix,TsparseMatrix-method 
[3734] [3735] [3736] [3737] [3738] [3739]
Overfull \hbox (15.8567pt too wide) in paragraph at lines 25411--25413
[]\T1/zi4/m/it/10 updown,character,mMatrix,CHMfactor-method 
Overfull \hbox (5.8567pt too wide) in paragraph at lines 25413--25415
[]\T1/zi4/m/it/10 updown,logical,mMatrix,CHMfactor-method 
[3740] [3741] [3742] [3743] [3744]) (./fullrefman.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
 )
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.tree} has been referenced but does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Sobj.Rul.SpatialGrid} has been referenced but d
oes not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Rgshhs} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dnearneigh} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.as.Rul.dsTMatrix.Rul.listw} has been referenced
 but does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.similar.listw} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.nb2listw} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.read.gal} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.matrix.csr} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.SparseM.ontology} has been referenced but does 
not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.modelMatrix} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.model.Matrix} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.nearcor} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.posdefify} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.summary\\unhbox\040\\voidb@x\040\\kern\040\\z@\
040\\char\040`\\protect\040\\protect\040\\leavevmode@ifvmode\040\\kern\040+.166
67em\\relax\040sparseMatrix.Rdash.method} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.get.adjacency} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.graph.adjacency} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.graph} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.sqrtm} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.logm} has been referenced but does not exist, r
eplaced by a fixed one
pdfTeX warning (dest): name{Rfn.showClass} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.loglm1} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r
eplaced by a fixed one
pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not
 exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis
t, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist
, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi
st, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no
t exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but 
does not exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n
ot exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, 
replaced by a fixed one
pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist,
 replaced by a fixed one
pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not 
exist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex
ist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e
xist, replaced by a fixed one
pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, 
replaced by a fixed one
{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/share/tex
live/texmf-dist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist
/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/
lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/cm-super/cm-super-
ts1.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{
/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}</usr/sha
re/texlive/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4b.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/inconsolata/Inconsolata-zi4r.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr5.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/lm/lmbsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/lm/lmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi5.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/lm/lmmib10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/lm/lmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy
5.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy7.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/cm-super/sftt0900.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/cm-super/sftt1000.pfb></usr/share/texlive/texm
f-dist/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texlive/texmf-dist/fonts
/type1/urw/times/utmb8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/time
s/utmbi8a.pfb></usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb><
/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on fullrefman.pdf (3795 pages, 10522391 bytes).
Transcript written on fullrefman.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi
@setfilename R-FAQ.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te
xmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again.
[1] Chapter 2 [2]
Underfull \hbox (badness 10000) in paragraph at lines 290--312
@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][][]@textrm ),
[3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 639--642
 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
. 
Underfull \hbox (badness 7379) in paragraph at lines 639--642
 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 
Underfull \hbox (badness 10000) in paragraph at lines 639--642
 [][]@texttt https://  master.  bioconductor.  org/  help/  publications/  book
s/ 
[7]
Underfull \hbox (badness 10000) in paragraph at lines 666--671
@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 10000) in paragraph at lines 1534--1537
[]@textrm See also [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_progra
mming_language#
Underfull \hbox (badness 10000) in paragraph at lines 1534--1537
@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39]
Underfull \hbox (badness 10000) in paragraph at lines 3137--3151
@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[40] [41]
Underfull \hbox (badness 10000) in paragraph at lines 3288--3296
@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
ed on the
[42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-math
sy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/l
circle1.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmex10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/lm/lmsy10.pfb>
Output written on R-FAQ.pdf (50 pages, 335137 bytes).
Transcript written on R-FAQ.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te
xmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc [-1] [-2]) [-3]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.aux) [1] Chapter 2 [2]
Underfull \hbox (badness 10000) in paragraph at lines 290--312
@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][][]@textrm ),
[3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 639--642
 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
. 
Underfull \hbox (badness 7379) in paragraph at lines 639--642
 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 
Underfull \hbox (badness 10000) in paragraph at lines 639--642
 [][]@texttt https://  master.  bioconductor.  org/  help/  publications/  book
s/ 
[7]
Underfull \hbox (badness 10000) in paragraph at lines 666--671
@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 10000) in paragraph at lines 1534--1537
[]@textrm See also [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_progra
mming_language#
Underfull \hbox (badness 10000) in paragraph at lines 1534--1537
@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39]
Underfull \hbox (badness 10000) in paragraph at lines 3137--3151
@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[40] [41]
Underfull \hbox (badness 10000) in paragraph at lines 3288--3296
@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
ed on the
[42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-math
sy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/l
circle1.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmex10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/lm/lmsy10.pfb>
Output written on R-FAQ.pdf (52 pages, 351679 bytes).
Transcript written on R-FAQ.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texlive/te
xmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc [-1] [-2]) [-3]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-FAQ.aux) [1] Chapter 2 [2]
Underfull \hbox (badness 10000) in paragraph at lines 290--312
@textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https://  buildd
.  debian.  org/  build.  php?  &  pkg=r-base[][][]@textrm ),
[3] [4] [5] [6]
Underfull \hbox (badness 10000) in paragraph at lines 639--642
 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
. 
Underfull \hbox (badness 7379) in paragraph at lines 639--642
 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 
Underfull \hbox (badness 10000) in paragraph at lines 639--642
 [][]@texttt https://  master.  bioconductor.  org/  help/  publications/  book
s/ 
[7]
Underfull \hbox (badness 10000) in paragraph at lines 666--671
@textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https://  doi.  org/ 
 10.  1080/  10618600.  1996.
[8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 10000) in paragraph at lines 1534--1537
[]@textrm See also [][]@texttt https://  en.  wikipedia.  org/  wiki/  R_progra
mming_language#
Underfull \hbox (badness 10000) in paragraph at lines 1534--1537
@texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia
l-ized ver-sions of
Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26]
Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
Writing index file R-FAQ.fn
[39]
Underfull \hbox (badness 10000) in paragraph at lines 3137--3151
@textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy
ch @textrm (@texttt https://  CRAN.  R-project.  org/
[40] [41]
Underfull \hbox (badness 10000) in paragraph at lines 3288--3296
@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
ed on the
[42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-math
sy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/l
circle1.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmex10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/lm/lmsy10.pfb>
Output written on R-FAQ.pdf (52 pages, 351678 bytes).
Transcript written on R-FAQ.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
@setfilename R-admin.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-admin.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] [-1] Chapter 1
Writing index file R-admin.cp
Writing index file R-admin.en
Underfull \hbox (badness 10000) in paragraph at lines 151--156
[]@textrm The tar-balls are avail-able from [][]@texttt https://  stat.  ethz. 
 ch/  R/  daily/  [][][]@textrm . Down-load
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16]
Underfull \hbox (badness 10000) in paragraph at lines 1505--1509
[]@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de
vel[] @textrm and @texttt make
Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23]
Overfull \hbox (16.31242pt too wide) in paragraph at lines 2112--2112
 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), 
sep=";"))[] 
[24] [25]
Overfull \hbox (56.55324pt too wide) in paragraph at lines 2325--2325
 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm
64" CXXFLAGS=-O2[] 
[26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34]
[35] Appendix A [36] [37] [38]
Overfull \hbox (27.8098pt too wide) in paragraph at lines 3296--3296
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[39] [40] [41] [42] [43] [44] [45] [46] [47] [48] Appendix B [49] [50] [51]
[52] [53] Appendix C [54] [55] [56] [57] [58] [59]
Overfull \hbox (37.99364pt too wide) in paragraph at lines 5059--5059
 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_
64.tar.gz[] 
Overfull \hbox (20.74757pt too wide) in paragraph at lines 5061--5061
 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64.
tar.gz[] 
Overfull \hbox (45.05586pt too wide) in paragraph at lines 5143--5143
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[60]
Overfull \hbox (17.16873pt too wide) in paragraph at lines 5193--5194
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][][]@smallrm .| 
[61]
Overfull \hbox (85.29668pt too wide) in paragraph at lines 5259--5259
 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf
ig:/usr/lib/pkgconfig[] 
[62] [63] [64] [65] [66]
Overfull \hbox (14.99889pt too wide) in paragraph at lines 5680--5680
 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++
abi.a[] 
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat
ic link the For-
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a
[] @textrm and
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co
m-piler have
Overfull \hbox (22.06111pt too wide) in paragraph at lines 5715--5715
 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version-
min=10.13"[] 
[67] [68] [69]
Overfull \hbox (119.7888pt too wide) in paragraph at lines 6040--6040
 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc
onfig:/usr/lib/64/pkgconfig[] 
[70] [71] (Function and variable index) [72]
No file R-admin.vrs.
(Concept index) [73]
No file R-admin.cps.
(Environment variable index) [74]
No file R-admin.ens.
[75] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/l
msy10.pfb>
Output written on R-admin.pdf (78 pages, 474390 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-admin.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc [-1] [-2])
[-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.aux)
Writing index file R-admin.cp
Writing index file R-admin.en
Underfull \hbox (badness 10000) in paragraph at lines 151--156
[]@textrm The tar-balls are avail-able from [][]@texttt https://  stat.  ethz. 
 ch/  R/  daily/  [][][]@textrm . Down-load
[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
Chapter 3 [15] [16]
Underfull \hbox (badness 10000) in paragraph at lines 1505--1509
[]@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de
vel[] @textrm and @texttt make
Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23]
Overfull \hbox (16.31242pt too wide) in paragraph at lines 2112--2112
 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), 
sep=";"))[] 
[24] [25]
Overfull \hbox (56.55324pt too wide) in paragraph at lines 2325--2325
 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm
64" CXXFLAGS=-O2[] 
[26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34]
[35] Appendix A [36] [37] [38]
Overfull \hbox (27.8098pt too wide) in paragraph at lines 3296--3296
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[39] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51]
[52] [53] Appendix C [54] [55] [56] [57] [58] [59]
Overfull \hbox (37.99364pt too wide) in paragraph at lines 5059--5059
 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_
64.tar.gz[] 
Overfull \hbox (20.74757pt too wide) in paragraph at lines 5061--5061
 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64.
tar.gz[] 
Overfull \hbox (45.05586pt too wide) in paragraph at lines 5143--5143
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[60]
Overfull \hbox (17.16873pt too wide) in paragraph at lines 5193--5194
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][][]@smallrm .| 
[61]
Overfull \hbox (85.29668pt too wide) in paragraph at lines 5259--5259
 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf
ig:/usr/lib/pkgconfig[] 
[62] [63] [64] [65]
Overfull \hbox (14.99889pt too wide) in paragraph at lines 5680--5680
 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++
abi.a[] 
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat
ic link the For-
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a
[] @textrm and
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co
m-piler have
[66]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 5715--5715
 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version-
min=10.13"[] 
[67] [68] [69]
Overfull \hbox (119.7888pt too wide) in paragraph at lines 6040--6040
 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc
onfig:/usr/lib/64/pkgconfig[] 
[70] [71] (Function and variable index) [72]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.vrs) (Concept index) [73]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.cps)
(Environment variable index) [74]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.ens) [75] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/lm/lmsy10.pfb>
Output written on R-admin.pdf (80 pages, 505029 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-admin.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc [-1] [-2])
[-3] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.aux)
Writing index file R-admin.cp
Writing index file R-admin.en
Underfull \hbox (badness 10000) in paragraph at lines 151--156
[]@textrm The tar-balls are avail-able from [][]@texttt https://  stat.  ethz. 
 ch/  R/  daily/  [][][]@textrm . Down-load
[1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
Chapter 3 [15] [16]
Underfull \hbox (badness 10000) in paragraph at lines 1505--1509
[]@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de
vel[] @textrm and @texttt make
Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23]
Overfull \hbox (16.31242pt too wide) in paragraph at lines 2112--2112
 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), 
sep=";"))[] 
[24] [25]
Overfull \hbox (56.55324pt too wide) in paragraph at lines 2325--2325
 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm
64" CXXFLAGS=-O2[] 
[26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34]
[35] Appendix A [36] [37] [38]
Overfull \hbox (27.8098pt too wide) in paragraph at lines 3296--3296
 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit --
disable-cpp[] 
[39] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51]
[52] [53] Appendix C [54] [55] [56] [57] [58] [59]
Overfull \hbox (37.99364pt too wide) in paragraph at lines 5059--5059
 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_
64.tar.gz[] 
Overfull \hbox (20.74757pt too wide) in paragraph at lines 5061--5061
 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64.
tar.gz[] 
Overfull \hbox (45.05586pt too wide) in paragraph at lines 5143--5143
 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr
/lib/pkgconfig[] 
[60]
Overfull \hbox (17.16873pt too wide) in paragraph at lines 5193--5194
[][][]@smallrm See [][]@smalltt https://  developer.  apple.  com/  documentati
on/  xcode/  notarizing_macos_software_before_distribution[][][]@smallrm .| 
[61]
Overfull \hbox (85.29668pt too wide) in paragraph at lines 5259--5259
 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf
ig:/usr/lib/pkgconfig[] 
[62] [63] [64] [65]
Overfull \hbox (14.99889pt too wide) in paragraph at lines 5680--5680
 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++
abi.a[] 
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat
ic link the For-
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a
[] @textrm and
Underfull \hbox (badness 10000) in paragraph at lines 5682--5688
 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co
m-piler have
[66]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 5715--5715
 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version-
min=10.13"[] 
[67] [68] [69]
Overfull \hbox (119.7888pt too wide) in paragraph at lines 6040--6040
 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc
onfig:/usr/lib/64/pkgconfig[] 
[70] [71] (Function and variable index) [72]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.vrs) (Concept index) [73]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.cps)
(Environment variable index) [74]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-admin.ens) [75] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/lm/lmsy10.pfb>
Output written on R-admin.pdf (80 pages, 505021 bytes).
Transcript written on R-admin.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
@setfilename R-data.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-data.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] [-1] (Acknowledgements) Chapter 1 [1]
Writing index file R-data.cp
Cross reference values unknown; you must run TeX again. [2] [3] [4]
Underfull \hbox (badness 10000) in paragraph at lines 445--449
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14]
[15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23]
[24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28]
No file R-data.vrs.
(Concept index) [29]
No file R-data.cps.
[30] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy1
0.pfb>
Output written on R-data.pdf (33 pages, 256585 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-data.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc [-1]) [-2]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc) (Acknowledgements)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.aux) Chapter 1 [1]
Writing index file R-data.cp
[2] [3] [4]
Underfull \hbox (badness 10000) in paragraph at lines 445--449
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14]
[15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23]
[24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.vrs [29]) (Concept index)
[30] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.cps) [31] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi1
2.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/lm/lmsy10.pfb>
Output written on R-data.pdf (35 pages, 287263 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-data.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc [-1]) [-2]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.toc) (Acknowledgements)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.aux) Chapter 1 [1]
Writing index file R-data.cp
[2] [3] [4]
Underfull \hbox (badness 10000) in paragraph at lines 445--449
[]@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore
ign @textrm (@texttt https://  CRAN.  R-project.  org/
Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14]
[15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23]
[24] Chapter 8 [25] Chapter 9 [26] Appendix A [27]
(Function and variable index) [28]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.vrs [29]) (Concept index)
[30] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-data.cps) [31] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi1
2.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/lm/lmsy10.pfb>
Output written on R-data.pdf (35 pages, 287273 bytes).
Transcript written on R-data.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
@setfilename R-exts.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] [-1] (Acknowledgements) Chapter 1 [1]
Writing index file R-exts.cp
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[18]
Underfull \hbox (badness 10000) in paragraph at lines 1614--1624
@texttt sourceforge.  net/  projects/  tktable/  files/  tktable/  2.  10/  Tkt
able2.  10.  tar.  gz[][][]@textrm , but
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2755--2758
[][][]@smallrm Some changes are linked from [][]@smalltt https://  isocpp.  org
/  std/  standing-documents/
[32]
Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827
 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 2850--2856
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50]
Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515
 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[51] [52] [53] [54] [55]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[56]
Underfull \hbox (badness 7558) in paragraph at lines 5009--5013
 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[57] [58] [59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 5461--5464
 @texttt gcc/  C-Extensions.  html[][][] @textrm and [][]@texttt https://  gcc.
  gnu.  org/  onlinedocs/  gcc/
[62] [63] [64]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682
 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[65]
Underfull \hbox (badness 10000) in paragraph at lines 5773--5774
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[66] [67] [68] [69] [70]
Underfull \hbox (badness 10000) in paragraph at lines 6230--6240
[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[][]) and RForge
Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82]
Underfull \hbox (badness 10000) in paragraph at lines 7278--7285
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[83] [84]
Underfull \hbox (badness 10000) in paragraph at lines 7457--7463
[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96]
Chapter 4 [97] [98] [99] [100] [101]
Underfull \hbox (badness 10000) in paragraph at lines 8752--8761
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[102] [103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 9017--9029
@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][][]@textrm ,
Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[105]
Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 
[106]
Underfull \hbox (badness 10000) in paragraph at lines 9204--9206
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[107]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[108] [109] [110] [111] [112]
Underfull \hbox (badness 10000) in paragraph at lines 9716--9718
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][][]@smallrm :
[113]
Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773
 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792
 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][] 
Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803
 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][] 
Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833
 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123]
Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[124] [125] [126] [127] [128] [129] [130]
Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[131] [132] [133] [134] [135] [136] [137] [138] [139]
Underfull \hbox (badness 10000) in paragraph at lines 12151--12153
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[153]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162]
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[][]@texttt https://  software.  intel.  com/  content/  www/  us/  en/  develo
p/  documentation/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt mixed-language-programming/  standard-tools-for-interoperability/  bind
.  html[][][]
[163] [164] [165] [166] [167] [168] [169] [170]
Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175]
[176]
Underfull \hbox (badness 10000) in paragraph at lines 15299--15305
[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[183]
Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[184] [185] [186] [187] [188] [189]
Underfull \hbox (badness 10000) in paragraph at lines 16271--16278
 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[190]
Underfull \hbox (badness 10000) in paragraph at lines 16394--16398
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
[191] (Function and variable index) [192]
No file R-exts.vrs.
(Concept index) [193]
No file R-exts.cps.
[194] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathsy.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathit.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lc
ircle1.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi7.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/lm/lmsy10.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/lm/lmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/l
m/lmsy9.pfb>
Output written on R-exts.pdf (197 pages, 911064 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc [-1] [-2] [-3])
[-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (Acknowledgements)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[18]
Underfull \hbox (badness 10000) in paragraph at lines 1614--1624
@texttt sourceforge.  net/  projects/  tktable/  files/  tktable/  2.  10/  Tkt
able2.  10.  tar.  gz[][][]@textrm , but
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2755--2758
[][][]@smallrm Some changes are linked from [][]@smalltt https://  isocpp.  org
/  std/  standing-documents/
[32]
Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827
 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 2850--2856
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50]
Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515
 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[51] [52] [53] [54] [55]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[56]
Underfull \hbox (badness 7558) in paragraph at lines 5009--5013
 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[57] [58] [59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 5461--5464
 @texttt gcc/  C-Extensions.  html[][][] @textrm and [][]@texttt https://  gcc.
  gnu.  org/  onlinedocs/  gcc/
[62] [63] [64]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682
 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[65]
Underfull \hbox (badness 10000) in paragraph at lines 5773--5774
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[66] [67] [68] [69] [70]
Underfull \hbox (badness 10000) in paragraph at lines 6230--6240
[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[][]) and RForge
Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82]
Underfull \hbox (badness 10000) in paragraph at lines 7278--7285
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[83] [84]
Underfull \hbox (badness 10000) in paragraph at lines 7457--7463
[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96]
Chapter 4 [97] [98] [99] [100] [101]
Underfull \hbox (badness 10000) in paragraph at lines 8752--8761
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[102] [103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 9017--9029
@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][][]@textrm ,
Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[105]
Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 
[106]
Underfull \hbox (badness 10000) in paragraph at lines 9204--9206
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[107]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[108] [109] [110] [111] [112]
Underfull \hbox (badness 10000) in paragraph at lines 9716--9718
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][][]@smallrm :
[113]
Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773
 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792
 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][] 
Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803
 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][] 
Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833
 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123]
Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[124] [125] [126] [127] [128] [129]
Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
Underfull \hbox (badness 10000) in paragraph at lines 12151--12153
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[153]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162]
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[][]@texttt https://  software.  intel.  com/  content/  www/  us/  en/  develo
p/  documentation/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt mixed-language-programming/  standard-tools-for-interoperability/  bind
.  html[][][]
[163] [164] [165] [166] [167] [168] [169] [170]
Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175]
[176]
Underfull \hbox (badness 10000) in paragraph at lines 15299--15305
[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[183]
Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[184] [185] [186] [187] [188] [189]
Underfull \hbox (badness 10000) in paragraph at lines 16271--16278
 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[190]
Underfull \hbox (badness 10000) in paragraph at lines 16394--16398
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
[191] (Function and variable index) [192]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.vrs [193] [194] [195])
(Concept index) [196] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.cps
[197]) [198] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lc
ircle1.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/lm/lmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/l
m/lmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy7.pfb>
Output written on R-exts.pdf (204 pages, 971351 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc [-1] [-2] [-3])
[-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (Acknowledgements)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[18]
Underfull \hbox (badness 10000) in paragraph at lines 1614--1624
@texttt sourceforge.  net/  projects/  tktable/  files/  tktable/  2.  10/  Tkt
able2.  10.  tar.  gz[][][]@textrm , but
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2755--2758
[][][]@smallrm Some changes are linked from [][]@smalltt https://  isocpp.  org
/  std/  standing-documents/
[32]
Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827
 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 2850--2856
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50]
Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515
 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[51] [52] [53] [54] [55]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[56]
Underfull \hbox (badness 7558) in paragraph at lines 5009--5013
 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[57] [58] [59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 5461--5464
 @texttt gcc/  C-Extensions.  html[][][] @textrm and [][]@texttt https://  gcc.
  gnu.  org/  onlinedocs/  gcc/
[62] [63] [64]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682
 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[65]
Underfull \hbox (badness 10000) in paragraph at lines 5773--5774
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[66] [67] [68] [69] [70]
Underfull \hbox (badness 10000) in paragraph at lines 6230--6240
[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[][]) and RForge
Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82]
Underfull \hbox (badness 10000) in paragraph at lines 7278--7285
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[83] [84]
Underfull \hbox (badness 10000) in paragraph at lines 7457--7463
[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96]
Chapter 4 [97] [98] [99] [100] [101]
Underfull \hbox (badness 10000) in paragraph at lines 8752--8761
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[102] [103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 9017--9029
@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][][]@textrm ,
Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[105]
Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 
[106]
Underfull \hbox (badness 10000) in paragraph at lines 9204--9206
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[107]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[108] [109] [110] [111] [112]
Underfull \hbox (badness 10000) in paragraph at lines 9716--9718
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][][]@smallrm :
[113]
Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773
 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792
 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][] 
Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803
 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][] 
Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833
 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123]
Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[124] [125] [126] [127] [128] [129]
Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
Underfull \hbox (badness 10000) in paragraph at lines 12151--12153
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[153]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162]
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[][]@texttt https://  software.  intel.  com/  content/  www/  us/  en/  develo
p/  documentation/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt mixed-language-programming/  standard-tools-for-interoperability/  bind
.  html[][][]
[163] [164] [165] [166] [167] [168] [169] [170]
Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175]
[176]
Underfull \hbox (badness 10000) in paragraph at lines 15299--15305
[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[183]
Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[184] [185] [186] [187] [188] [189]
Underfull \hbox (badness 10000) in paragraph at lines 16271--16278
 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[190]
Underfull \hbox (badness 10000) in paragraph at lines 16394--16398
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
[191] (Function and variable index) [192]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.vrs [193] [194] [195])
(Concept index) [196] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.cps
[197]) [198] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lc
ircle1.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/lm/lmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/l
m/lmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy7.pfb>
Output written on R-exts.pdf (204 pages, 971348 bytes).
Transcript written on R-exts.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
@setfilename R-intro.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-intro.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again.
Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-4.1.2/doc/manual/images/hist.pdf> [34] </builddir/build/BU
ILD/R-4.1.2/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-4.1.2/doc/manu
al/images/QQ.pdf> [35] [36] </builddir/build/BUILD/R-4.1.2/doc/manual/images/ic
e.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45]
[46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] </buildd
ir/build/BUILD/R-4.1.2/doc/manual/images/fig11.pdf> [71] </builddir/build/BUILD
/R-4.1.2/doc/manual/images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76]
[77] Chapter 14 [78] [79]
Underfull \hbox (badness 10000) in paragraph at lines 6648--6653
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
Underfull \hbox (badness 7064) in paragraph at lines 6648--6653
 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they 
may work in
[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93]
No file R-intro.vrs.
Appendix E [94]
No file R-intro.cps.
Appendix F [95] [96] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-math
sy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmt
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/lm/lmex10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmm
i9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy10.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/lm/lmsy7.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/lm/lmsy9.pfb>
Output written on R-intro.pdf (99 pages, 541308 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-intro.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc [-1] [-2] [-3])
[-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (Preface)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.aux) Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-4.1.2/doc/manual/images/hist.pdf> [34] </builddir/build/BU
ILD/R-4.1.2/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-4.1.2/doc/manu
al/images/QQ.pdf> [35] [36] </builddir/build/BUILD/R-4.1.2/doc/manual/images/ic
e.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45]
[46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] </buildd
ir/build/BUILD/R-4.1.2/doc/manual/images/fig11.pdf> [71] </builddir/build/BUILD
/R-4.1.2/doc/manual/images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76]
[77] Chapter 14 [78] [79]
Underfull \hbox (badness 10000) in paragraph at lines 6648--6653
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
Underfull \hbox (badness 7064) in paragraph at lines 6648--6653
 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they 
may work in
[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.vrs [94] [95]) Appendix E
[96] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.cps [97]) Appendix F
[98] [99] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-math
sy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/lm/lmex10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/lm/lmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi7.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/lm/lmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/lm/lmsy7.pfb>
Output written on R-intro.pdf (105 pages, 598099 bytes).
Transcript written on R-intro.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-intro.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc [-1] [-2] [-3])
[-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (Preface)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.aux) Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-4.1.2/doc/manual/images/hist.pdf> [34] </builddir/build/BU
ILD/R-4.1.2/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-4.1.2/doc/manu
al/images/QQ.pdf> [35] [36] </builddir/build/BUILD/R-4.1.2/doc/manual/images/ic
e.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45]
[46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] </buildd
ir/build/BUILD/R-4.1.2/doc/manual/images/fig11.pdf> [71] </builddir/build/BUILD
/R-4.1.2/doc/manual/images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76]
[77] Chapter 14 [78] [79]
Underfull \hbox (badness 10000) in paragraph at lines 6648--6653
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
Underfull \hbox (badness 7064) in paragraph at lines 6648--6653
 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they 
may work in
[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.vrs [94] [95]) Appendix E
[96] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.cps [97]) Appendix F
[98] [99] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-math
sy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/lm/lmex10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/lm/lmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi7.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/lm/lmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/lm/lmsy7.pfb>
Output written on R-intro.pdf (105 pages, 598106 bytes).
Transcript written on R-intro.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi
@setfilename R-ints.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-ints.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] [-1] Chapter 1
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 
Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 
Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470
 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 
Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3
[27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35]
[36] [37] [38] [39] [40] [41] [42] Chapter 7 [43]
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal
ly,
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link, as
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re-
solves to
[44] Chapter 8 [45]
Underfull \hbox (badness 10000) in paragraph at lines 3841--3845
 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http
s://  CRAN.  R-project.  org/
[46]
Underfull \hbox (badness 10000) in paragraph at lines 3875--3880
 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c
hoice of
[47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10
[58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index)
[62]
No file R-ints.vrs.
(Concept index) [63]
No file R-ints.cps.
[64] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/tex
mf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/lm/lmsy10.pfb>
Output written on R-ints.pdf (67 pages, 399949 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-ints.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc [-1]) [-2]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.aux)
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 
Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 
Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470
 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 
Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3
[27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35]
[36] [37] [38] [39] [40] [41] [42] Chapter 7 [43]
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal
ly,
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link, as
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re-
solves to
[44] Chapter 8 [45]
Underfull \hbox (badness 10000) in paragraph at lines 3841--3845
 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http
s://  CRAN.  R-project.  org/
[46]
Underfull \hbox (badness 10000) in paragraph at lines 3875--3880
 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c
hoice of
[47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10
[58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index)
[62] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.vrs [63])
(Concept index) [64] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.cps)
[65] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/lm/lmsy10.pfb>
Output written on R-ints.pdf (69 pages, 437139 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-ints.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc [-1]) [-2]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.aux)
Writing index file R-ints.cp
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468
 [] @texttt length(nM <- asNamespace("Matrix") )                    # 941 for M
atrix 1.2-6[] 
Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469
 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener
ics with methods[] 
Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470
 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' 
(group)generic[] 
Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471
 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix
" "ANY#ldiMatrix" "ANY#Matrix"[] 
[16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3
[27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35]
[36] [37] [38] [39] [40] [41] [42] Chapter 7 [43]
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal
ly,
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link, as
Underfull \hbox (badness 10000) in paragraph at lines 3654--3663
@textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re-
solves to
[44] Chapter 8 [45]
Underfull \hbox (badness 10000) in paragraph at lines 3841--3845
 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http
s://  CRAN.  R-project.  org/
[46]
Underfull \hbox (badness 10000) in paragraph at lines 3875--3880
 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c
hoice of
[47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10
[58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index)
[62] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.vrs [63])
(Concept index) [64] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-ints.cps)
[65] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/lm/lmsy10.pfb>
Output written on R-ints.pdf (69 pages, 437135 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
@setfilename R-lang.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] [-1] Chapter 1
Writing index file R-lang.cp
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4353--4355
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51]
No file R-lang.vrs.
(Concept Index) [52]
No file R-lang.cps.
Appendix A [53] [54] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy1
0.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy9.pfb>
Output written on R-lang.pdf (57 pages, 313725 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc [-1] [-2]) [-3]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4353--4355
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.vrs [52]) (Concept Index)
[53] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.cps) Appendix A [54]
[55] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi1
2.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/lm/lmsy10.pfb>
Output written on R-lang.pdf (60 pages, 357795 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-lang.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc [-1] [-2]) [-3]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.toc) Chapter 1
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.aux)
Writing index file R-lang.cp
Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27]
[28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7
[39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45]
Underfull \hbox (badness 10000) in paragraph at lines 4353--4355
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[46] [47] [48] [49] [50] (Function and Variable Index) [51]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.vrs [52]) (Concept Index)
[53] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-lang.cps) Appendix A [54]
[55] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi1
2.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/lm/lmsy10.pfb>
Output written on R-lang.pdf (60 pages, 357786 bytes).
Transcript written on R-lang.log.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc'
+ cp doc/manual/R-exts.texi doc/manual/R-exts.texi.spot
+ cp doc/manual/R-intro.texi doc/manual/R-intro.texi.spot
+ sed -i 's|@eqn|@math|g' doc/manual/R-exts.texi
+ sed -i 's|@eqn|@math|g' doc/manual/R-intro.texi
+ make MAKEINFO=texi2any info
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc'
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-intro.info.utf8 doc/manual/R-intro.info
+ mv doc/manual/R-intro.info.utf8 doc/manual/R-intro.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info
+ mv doc/manual/R-FAQ.info.utf8 doc/manual/R-FAQ.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/FAQ.utf8 doc/FAQ
+ mv doc/FAQ.utf8 doc/FAQ
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-admin.info.utf8 doc/manual/R-admin.info
+ mv doc/manual/R-admin.info.utf8 doc/manual/R-admin.info
+ for i in doc/manual/R-intro.info doc/manual/R-FAQ.info doc/FAQ doc/manual/R-admin.info doc/manual/R-exts.info-1
+ iconv -f iso-8859-1 -t utf-8 -o doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1
+ mv doc/manual/R-exts.info-1.utf8 doc/manual/R-exts.info-1
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.6m3BuQ
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386
++ dirname /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386
+ cd R-4.1.2
+ make DESTDIR=/builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386 install install-info
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/m4'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/m4'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tools'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tools'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc'
installing doc ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/man/man1
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/html'
installing doc/html ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R/html
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/html'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
installing doc/manual ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R/manual
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R/manual/images
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/etc'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/etc
installing etc ...
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/etc'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/share'
installing share ...
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/R
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/dictionaries
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/encodings
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/java
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/licenses
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/make
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/Rd
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/Rd/macros
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/sh
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/texmf
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/texmf/bibtex/bib
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/texmf/bibtex/bst
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/texmf/tex/latex
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/share'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/scripts'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/bin
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/scripts'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/include/R
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/include/R/R_ext
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include/R_ext'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/blas'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/blas'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/tre'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/tre'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/tzone'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/tzone'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/xdr'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/extra/intl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra/intl'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/extra'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/appl'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/appl'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/nmath'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/nmath'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/unix'
gcc -m32 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/pkgconfig
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/unix'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/exec
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/main'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/lib
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/main'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/modules
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/internet'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/lapack'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules/X11'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/modules'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/library'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library
installing packages ...
  building HTML index ...
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/library'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
make[1]: Nothing to be done for 'install'.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
mkdir -p -- /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/info"
installing R info pages ...
updating '/usr/share/info/dir' ...
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
+ mv doc/manual/R-exts.texi.spot doc/manual/R-exts.texi
+ mv doc/manual/R-intro.texi.spot doc/manual/R-intro.texi
+ make DESTDIR=/builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386 install-pdf
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
@setfilename R-exts.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-exts.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc [-1] [-2] [-3])
[-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.toc) (Acknowledgements)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.aux) Chapter 1 [1]
Writing index file R-exts.cp
[2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
Overfull \hbox (73.7993pt too wide) in paragraph at lines 1514--1514
 []                  @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec"
, "--no-test-load")[] 
Overfull \hbox (50.80455pt too wide) in paragraph at lines 1515--1515
 []        @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL
, quiet = TRUE)[] 
[18]
Underfull \hbox (badness 10000) in paragraph at lines 1614--1624
@texttt sourceforge.  net/  projects/  tktable/  files/  tktable/  2.  10/  Tkt
able2.  10.  tar.  gz[][][]@textrm , but
[19] [20] [21] [22] [23] [24] [25] [26] [27] [28]
Overfull \hbox (46.15797pt too wide) in paragraph at lines 2512--2512
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 
Overfull \hbox (31.98314pt too wide) in paragraph at lines 2514--2514
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[29] [30] [31]
Underfull \hbox (badness 10000) in paragraph at lines 2755--2758
[][][]@smallrm Some changes are linked from [][]@smalltt https://  isocpp.  org
/  std/  standing-documents/
[32]
Overfull \hbox (39.30717pt too wide) in paragraph at lines 2827--2827
 []            @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX
11PICFLAGS)")[] 
Underfull \hbox (badness 10000) in paragraph at lines 2850--2856
[][][]@smallrm See [][]@smalltt https://  isocpp.  org/  std/  standing-documen
ts/  sd-6-sg10-feature-test-recommendations[][][] @smallrm or
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50]
Overfull \hbox (59.67485pt too wide) in paragraph at lines 4496--4496
 []         @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB
ILITY)" \[] 
Overfull \hbox (37.99364pt too wide) in paragraph at lines 4515--4515
 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX
PICFLAGS`[] 
[51] [52] [53] [54] [55]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 4933--4933
 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v
ersion")[] 
Overfull \hbox (26.49626pt too wide) in paragraph at lines 4935--4935
 []  @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse 
= "."))[] 
Overfull \hbox (43.74232pt too wide) in paragraph at lines 4936--4936
 []  @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a
vailable")[] 
Overfull \hbox (55.2397pt too wide) in paragraph at lines 4951--4951
 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor 
version 52.0[] 
[56]
Underfull \hbox (badness 7558) in paragraph at lines 5009--5013
 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b
e looked for
[57] [58] [59] [60] [61]
Underfull \hbox (badness 10000) in paragraph at lines 5461--5464
 @texttt gcc/  C-Extensions.  html[][][] @textrm and [][]@texttt https://  gcc.
  gnu.  org/  onlinedocs/  gcc/
[62] [63] [64]
Overfull \hbox (32.24495pt too wide) in paragraph at lines 5682--5682
 []@texttt 'register' storage class specifier is deprecated and incompatible wi
th C++17[] 
[65]
Underfull \hbox (badness 10000) in paragraph at lines 5773--5774
[][][]@smallrm See [][]@smalltt https://  prereleases.  llvm.  org/  11.  0.  0
/  rc2/  tools/  clang/  docs/  ReleaseNotes.  html#
[66] [67] [68] [69] [70]
Underfull \hbox (badness 10000) in paragraph at lines 6230--6240
[]@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https://  R-Forge.  r-pro
ject.  org[]@textrm )[][]) and RForge
Chapter 2 [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82]
Underfull \hbox (badness 10000) in paragraph at lines 7278--7285
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[83] [84]
Underfull \hbox (badness 10000) in paragraph at lines 7457--7463
[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text[] @textrm part of
[85] [86] [87] [88] Chapter 3 [89] [90] [91] [92] [93] [94] [95] [96]
Chapter 4 [97] [98] [99] [100] [101]
Underfull \hbox (badness 10000) in paragraph at lines 8752--8761
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g.
[102] [103] [104]
Underfull \hbox (badness 10000) in paragraph at lines 9017--9029
@textrm See [][]@texttt https://  clang.  llvm.  org/  docs/  UsersManual.  htm
l#  controlling-code-generation[][][]@textrm ,
Overfull \hbox (27.28387pt too wide) in paragraph at lines 9033--9034
[][][]@smallrm see [][]@smalltt https://  llvm.  org/  devmtg/  2014-04/  PDFs/
  LightningTalks/  EuroLLVM%202014%20--%20container%20overflow.
[105]
Overfull \hbox (56.55324pt too wide) in paragraph at lines 9171--9171
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 
[106]
Underfull \hbox (badness 10000) in paragraph at lines 9204--9206
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by
[107]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 9350--9350
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[108] [109] [110] [111] [112]
Underfull \hbox (badness 10000) in paragraph at lines 9716--9718
[][][]@smallrm See [][]@smalltt https://  svn.  r-project.  org/  R-dev-web/  t
runk/  CRAN/  QA/  Simon/  R-build/  fixpathR[][][]@smallrm :
[113]
Overfull \hbox (102.54274pt too wide) in paragraph at lines 9773--9773
 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati
on [-Wlto-type-mismatch][] 
Overfull \hbox (125.53749pt too wide) in paragraph at lines 9792--9792
 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla
ration [-Wlto-type-mismatch][] 
Overfull \hbox (119.7888pt too wide) in paragraph at lines 9803--9803
 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar
ation [-Wlto-type-mismatch][] 
Overfull \hbox (22.06111pt too wide) in paragraph at lines 9833--9833
 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to 
INTEGER(4)[] 
Chapter 5 [114] [115] [116] [117] [118] [119] [120] [121] [122] [123]
Overfull \hbox (30.03963pt too wide) in paragraph at lines 10680--10680
 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de
riv, PACKAGE = "splines")[] 
[124] [125] [126] [127] [128] [129]
Overfull \hbox (16.31242pt too wide) in paragraph at lines 11257--11257
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[130] [131] [132] [133] [134] [135] [136] [137] [138] [139]
Underfull \hbox (badness 10000) in paragraph at lines 12151--12153
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151]
[152]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 13198--13198
 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[153]
Overfull \hbox (50.80455pt too wide) in paragraph at lines 13296--13296
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE
_ANY} cetype_t;[] 
[154] Chapter 6 [155] [156] [157] [158] [159] [160] [161] [162]
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[]@textrm Passing a variable-length string from C to For-tran is trick-ier, but
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
[][]@texttt https://  software.  intel.  com/  content/  www/  us/  en/  develo
p/  documentation/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt fortran-compiler-oneapi-dev-guide-and-reference/  top/  compiler-refere
nce/
Underfull \hbox (badness 10000) in paragraph at lines 14048--14053
@texttt mixed-language-programming/  standard-tools-for-interoperability/  bind
.  html[][][]
[163] [164] [165] [166] [167] [168] [169] [170]
Warning: unbalanced parentheses in @def... [171] [172] [173] [174] [175]
[176]
Underfull \hbox (badness 10000) in paragraph at lines 15299--15305
[]@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic
sEngine.h[]@textrm , @texttt R_
Chapter 7 [177] [178] [179] Chapter 8 [180] [181] [182]
Overfull \hbox (22.06111pt too wide) in paragraph at lines 15710--15710
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[183]
Overfull \hbox (33.55849pt too wide) in paragraph at lines 15768--15768
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[184] [185] [186] [187] [188] [189]
Underfull \hbox (badness 10000) in paragraph at lines 16271--16278
 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[190]
Underfull \hbox (badness 10000) in paragraph at lines 16394--16398
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
[191] (Function and variable index) [192]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.vrs [193] [194] [195])
(Concept index) [196] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-exts.cps
[197]) [198] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathsy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
bx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lc
ircle1.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi12.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/lm/lmmi7.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/lm/lmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/l
m/lmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmsy7.pfb>
Output written on R-exts.pdf (204 pages, 971348 bytes).
Transcript written on R-exts.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
@setfilename R-intro.info
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/texinfo.tex
Loading texinfo [version 2021-04-25.21]: pdf, fonts, glyphs, page headings,
tables, conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions,
(/builddir/build/BUILD/R-4.1.2/doc/manual/epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
Writing index file R-intro.vr
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-defs.texi
(/usr/share/texlive/texmf-dist/tex/texinfo/txi-en.tex))
(/builddir/build/BUILD/R-4.1.2/doc/manual/version.texi) [1{/usr/share/texlive/t
exmf-var/fonts/map/pdftex/updmap/pdftex.map
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): invalid entry for `pcrr8rn': SlantFont/ExtendFont can be used 
only with embedded Type1 fonts
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rpxpplro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxphvro' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmb' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbi' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmbo' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmr' already exists, duplicates ignored
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmri' already exists, duplicates ignore
d
pdfTeX warning: pdfetex (file /usr/share/texlive/texmf-var/fonts/map/pdftex/upd
map/pdftex.map): fontmap entry for `rtxptmro' already exists, duplicates ignore
d
}] [2] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc [-1] [-2] [-3])
[-4] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.toc) (Preface)
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.aux) Chapter 1 [1]
Writing index file R-intro.cp
[2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13]
[14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24]
Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] </bu
ilddir/build/BUILD/R-4.1.2/doc/manual/images/hist.pdf> [34] </builddir/build/BU
ILD/R-4.1.2/doc/manual/images/ecdf.pdf> </builddir/build/BUILD/R-4.1.2/doc/manu
al/images/QQ.pdf> [35] [36] </builddir/build/BUILD/R-4.1.2/doc/manual/images/ic
e.pdf> [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45]
[46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58]
[59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] </buildd
ir/build/BUILD/R-4.1.2/doc/manual/images/fig11.pdf> [71] </builddir/build/BUILD
/R-4.1.2/doc/manual/images/fig12.pdf> [72] [73] [74] [75] Chapter 13 [76]
[77] Chapter 14 [78] [79]
Underfull \hbox (badness 10000) in paragraph at lines 6648--6653
 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
Underfull \hbox (badness 7064) in paragraph at lines 6648--6653
 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they 
may work in
[80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89]
[90] Appendix C [91] [92] Appendix D [93]
(/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.vrs [94] [95]) Appendix E
[96] (/builddir/build/BUILD/R-4.1.2/doc/manual/R-intro.cps [97]) Appendix F
[98] [99] )
(see the transcript file for additional information){/usr/share/texlive/texmf-d
ist/fonts/enc/dvips/lm/lm-mathex.enc}{/usr/share/texlive/texmf-dist/fonts/enc/d
vips/lm/lm-mathit.enc}{/usr/share/texlive/texmf-dist/fonts/enc/dvips/lm/lm-math
sy.enc}</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmb10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/share
/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texliv
e/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fo
nts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type
1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmsl9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti
10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb></usr/share/texli
ve/texmf-dist/fonts/type1/public/lm/lmex10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/lm/lmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/publ
ic/lm/lmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi7.pfb
></usr/share/texlive/texmf-dist/fonts/type1/public/lm/lmmi9.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/lm/lmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/lm/lmsy7.pfb>
Output written on R-intro.pdf (105 pages, 598106 bytes).
Transcript written on R-intro.log.
installing R manuals in PDF format ...
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/doc/manual'
+ rm -f /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/info/dir
+ rm -f /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/info/dir.old
+ mkdir -p /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R
+ install -p CAPABILITIES /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R
+ cd src/nmath/standalone
+ make install DESTDIR=/builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/src/include'
make[1]: 'Rmath.h' is up to date.
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/src/include'
+ mkdir -p /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/etc/ld.so.conf.d
+ echo /usr/lib/R/lib
+ mkdir -p /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/library
+ touch -r README /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R/CAPABILITIES
+ touch -r README doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf
+ touch -r README /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/bin/R
+ sed -i 's|\..\/\..|/usr/lib/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R/html/packages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/bkde.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/bkde2D.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/bkfe.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/dpih.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/dpik.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/dpill.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/html/locpoly.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Aids2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Animals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Boston.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Cars93.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Cushings.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/DDT.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/GAGurine.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Insurance.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/MASS-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Melanoma.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Null.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/OME.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Pima.tr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Rabbit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Rubber.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/SP500.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Sitka.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Sitka89.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Skye.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/Traffic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/UScereal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/UScrime.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/VA.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/abbey.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/accdeaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/addterm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/anorexia.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/anova.negbin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/area.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/bacteria.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/bandwidth.nrd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/bcv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/beav1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/beav2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/biopsy.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/birthwt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/boxcox.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/cabbages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/caith.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/cats.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/cement.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/chem.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/con2tr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/confint.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/contr.sdif.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/coop.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/corresp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/cov.rob.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/cov.trob.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/cpus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/crabs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/deaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/denumerate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/dose.p.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/drivers.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/dropterm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/eagles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/epil.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/eqscplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/farms.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/fgl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/fitdistr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/forbes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/fractions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/galaxies.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/gamma.dispersion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/gamma.shape.glm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/gehan.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/genotype.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/geyser.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/gilgais.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/ginv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/glm.convert.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/glm.nb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/glmmPQL.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/hills.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/hist.scott.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/housing.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/huber.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/hubers.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/immer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/isoMDS.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/kde2d.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/lda.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/ldahist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/leuk.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/lm.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/lm.ridge.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/loglm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/loglm1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/logtrans.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/lqs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/mammals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/mca.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/mcycle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/menarche.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/michelson.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/minn38.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/motors.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/muscle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/mvrnorm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/negative.binomial.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/newcomb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/nlschools.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/npk.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/npr1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/oats.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/painters.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/pairs.lda.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/parcoord.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/petrol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/phones.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/plot.lda.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/plot.mca.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/plot.profile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/polr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/predict.glmmPQL.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/predict.lda.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/predict.lqs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/predict.mca.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/predict.qda.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/profile.glm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/qda.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/quine.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/rational.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/renumerate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/rlm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/rms.curv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/rnegbin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/road.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/rotifer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/sammon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/ships.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/shoes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/shrimp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/shuttle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/snails.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/stdres.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/steam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/stepAIC.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/stormer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/studres.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/summary.loglm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/summary.negbin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/summary.rlm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/survey.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/synth.tr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/theta.md.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/topo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/truehist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/ucv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/waders.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/whiteside.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/width.SJ.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/write.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/html/wtloss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/BunchKaufman-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/CAex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/CHMfactor-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Cholesky-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Cholesky.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/CsparseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Diagonal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Hilbert.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/KNex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/KhatriRao.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/LU-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Matrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/MatrixClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/MatrixFactorization-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/RsparseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Schur-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Schur.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/SparseM-conv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Subassign-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/TsparseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/USCounties.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/Xtrct-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/abIndex-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/abIseq.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/all-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/all.equal-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/atomicVector-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/band.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/bandSparse.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/bdiag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/boolean-matprod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/cBind.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/chol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/chol2inv-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/colSums.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/compMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/condest.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ddenseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ddiMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/denseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dgCMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dgRMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dgTMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dgeMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/diagU2N.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/diagonalMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dpoMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/drop0.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dsCMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dsRMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dsparseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dsyMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dtCMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dtRMatrix-class-def.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dtpMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/dtrMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/expand.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/expm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/externalFormats.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/facmul.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/forceSymmetric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/formatSparseM.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/generalMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/graph2T.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/image-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/indMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/index-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/invPerm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/is.na-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/is.null.DN.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/isSymmetric-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/isTriangular.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/kronecker-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ldenseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ldiMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/lgeMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/lsparseMatrix-classes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/lsyMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ltrMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/lu.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/mat2triplet.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/matrix-products.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/nMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ndenseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/nearPD.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ngeMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/nnzero.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/norm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/nsparseMatrix-classes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/nsyMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/ntrMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/number-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/pMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/printSpMatrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/qr-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/rankMatrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/rcond.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/rep2abI.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/replValue-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/rleDiff-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/rsparsematrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/solve-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/spMatrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/sparse.model.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/sparseLU-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/sparseMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/sparseMatrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/sparseQR-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/sparseVector-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/sparseVector.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/symmetricMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/symmpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/triangularMatrix-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/uniqTsparse.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/unpack.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/unused-classes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/updown.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/html/wrld_1deg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Arithmetic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/AsIs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Bessel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/CallExternal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Colon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Comparison.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Constants.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Cstack_info.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/DateTimeClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Dates.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Deprecated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Encoding.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/EnvVar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Extract.data.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Extract.factor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Extract.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Extremes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Foreign-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Foreign.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Hyperbolic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ISOdatetime.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/InternalMethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/La_library.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/La_version.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Last.value.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Log.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Logic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/LongVectors.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/MathFun.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Memory-limits.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Memory.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/NA.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/NULL.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/NumericConstants.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Ops.Date.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Paren.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Platform.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Primitive.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Quotes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Random-user.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Random.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/RdUtils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Recall.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Reserved.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Rhome.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Round.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/S3method.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Signals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Special.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Startup.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Syntax.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.getenv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.getpid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.glob.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.info.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.localeconv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.readlink.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.setFileTime.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.setenv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.sleep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.time.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Sys.which.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Trig.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/UTF8filepaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/UseMethod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Vectorize.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/Version.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/abbreviate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/agrep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/all.equal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/all.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/allnames.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/any.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/aperm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/append.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/apply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/args.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/array.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/as.Date.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/as.POSIXlt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/as.data.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/as.environment.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/as.function.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/asplit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/assign.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/assignOps.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/attach.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/attr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/attributes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/autoload.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/backsolve.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/base-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/base-deprecated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/base-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/base-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/basename.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/bincode.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/bindenv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/bitwise.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/body.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/bquote.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/browser.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/browserText.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/builtins.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/by.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/c.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/call.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/callCC.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/capabilities.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/cat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/cbind.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/char.expand.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/character.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/charmatch.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/chartr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/chkDots.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/chol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/chol2inv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/col.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/colSums.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/colnames.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/commandArgs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/comment.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/complex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/conditions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/conflicts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/connections.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/contributors.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/copyright.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/crossprod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/cumsum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/curlGetHeaders.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/cut.POSIXt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/cut.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/data.class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/data.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/data.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dataframeHelpers.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/date.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dcf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/debug.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/delayedAssign.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/deparse.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/deparseOpts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/det.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/detach.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dev.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/diag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/diff.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/difftime.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dimnames.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/do.call.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dontCheck.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dots.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/double.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dput.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/drop.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/droplevels.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dump.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/duplicated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/dynload.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/eapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/eigen.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/encodeString.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/environment.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/eval.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/exists.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/expand.grid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/expression.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/extSoftVersion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/factor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/file.access.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/file.choose.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/file.info.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/file.path.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/file.show.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/files.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/files2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/find.package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/findInterval.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/force.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/forceAndCall.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/formals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/format.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/format.info.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/format.pval.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/formatDL.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/formatc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/function.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/funprog.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/gc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/gc.time.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/gctorture.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/get.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/getCallingDLL.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/getDLLRegisteredRoutines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/getLoadedDLLs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/getNativeSymbolInfo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/gettext.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/getwd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/gl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/grep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/grepRaw.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/groupGeneric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/grouping.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/gzcon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/hexmode.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/iconv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/icuSetCollate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/identical.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/identity.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ifelse.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/integer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/interaction.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/interactive.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/invisible.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/is.finite.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/is.function.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/is.language.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/is.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/is.recursive.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/is.single.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/is.unsorted.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/isR.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/isS4.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/isSymmetric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/jitter.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/kappa.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/kronecker.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/l10n_info.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/labels.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/lapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/lazyload.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/length.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/lengths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/levels.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/libPaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/libcurlVersion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/library.dynam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/library.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/license.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/list.files.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/list.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/list2DF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/list2env.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/load.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/locales.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/logical.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/lower.tri.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/make.names.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/make.unique.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/mapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/marginSums.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/mat.or.vec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/match.arg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/match.call.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/match.fun.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/match.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/matmult.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/maxCol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/mean.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/memCompress.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/memlimits.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/memory.profile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/merge.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/message.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/missing.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/mode.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/name.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/names.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/nargs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/nchar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/nlevels.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/noquote.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/norm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/normalizePath.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/notyet.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/nrow.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ns-dblcolon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ns-hooks.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ns-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ns-load.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ns-reflect.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/ns-topenv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/numeric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/numeric_version.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/octmode.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/on.exit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/options.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/order.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/outer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/parse.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/paste.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/path.expand.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/pcre_config.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/pipeOp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/plot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/pmatch.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/polyroot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/pos.to.env.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/pretty.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/print.dataframe.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/print.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/print.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/prmatrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/proc.time.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/prod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/proportions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/pushBack.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/qr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/qraux.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/quit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/range.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rank.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/raw.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rawConnection.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rawConversion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/readBin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/readChar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/readLines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/readRDS.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/readRenviron.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/readline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/reg.finalizer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/regex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/regmatches.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/replace.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rev.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/round.POSIXt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/row.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/row.names.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/rowsum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sQuote.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sample.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/save.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/scale.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/scan.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/search.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/seek.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/seq.Date.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/seq.POSIXt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/seq.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sequence.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/serialize.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/setTimeLimit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sets.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/shQuote.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/showConnections.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sign.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sink.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/slice.index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/slotOp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/socketSelect.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/solve.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sort.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/source.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/split.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sprintf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/srcfile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/standardGeneric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/startsWith.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/stop.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/stopifnot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/strptime.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/strrep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/strsplit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/strtoi.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/strtrim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/structure.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/strwrap.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/subset.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/substitute.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/substr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/summary.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/svd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sweep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/switch.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sys.parent.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/sys.source.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/system.file.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/system.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/system.time.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/system2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/t.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/table.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/tabulate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/tapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/taskCallback.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/taskCallbackManager.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/taskCallbackNames.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/tempfile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/textconnections.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/tilde.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/timezones.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/toString.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/trace.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/traceback.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/tracemem.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/transform.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/trimws.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/try.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/typeof.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/unique.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/unlink.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/unlist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/unname.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/userhooks.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/utf8Conversion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/validUTF8.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/vector.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/warning.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/warnings.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/weekday.POSIXt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/which.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/which.min.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/with.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/withVisible.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/write.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/writeLines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/xtfrm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/zMachine.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/zScript.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/zapsmall.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/zpackages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/base/html/zutils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/EEF.profile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/Imp.Estimates.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/abc.ci.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/acme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/aids.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/aircondit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/amis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/aml.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/beaver.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/bigcity.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/boot-practicals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/boot.array.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/boot.ci.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/boot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/brambles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/breslow.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/calcium.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/cane.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/capability.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/catsM.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/cav.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/cd4.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/cd4.nested.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/censboot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/channing.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/claridge.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/cloth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/co.transfer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/coal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/corr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/cum3.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/cv.glm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/darwin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/dogs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/downs.bc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/ducks.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/empinf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/envelope.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/exp.tilt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/fir.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/freq.array.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/frets.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/glm.diag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/glm.diag.plots.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/gravity.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/hirose.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/imp.weights.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/inv.logit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/islay.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/jack.after.boot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/k3.linear.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/linear.approx.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/lines.saddle.distn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/logit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/manaus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/melanoma.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/motor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/neuro.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/nitrofen.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/nodal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/norm.ci.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/nuclear.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/paulsen.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/plot.boot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/poisons.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/polar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/print.boot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/print.bootci.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/print.saddle.distn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/print.simplex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/remission.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/saddle.distn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/saddle.distn.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/saddle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/salinity.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/simplex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/simplex.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/smooth.f.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/sunspot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/survival.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/tau.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/tilt.boot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/tsboot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/tuna.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/urine.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/var.linear.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/boot/html/wool.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/SOM.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/batchSOM.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/condense.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/knn.cv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/knn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/knn1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/lvq1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/lvq2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/lvq3.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/lvqinit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/lvqtest.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/multiedit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/olvq1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/reduce.nn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/html/somgrid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/agnes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/agnes.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/agriculture.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/animals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/bannerplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/chorSub.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/clara.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/clara.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/clusGap.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/clusplot.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/clusplot.partition.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/cluster-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/coef.hclust.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/daisy.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/diana.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/dissimilarity.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/ellipsoidhull.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/fanny.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/fanny.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/flower.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/lower.to.upper.tri.inds.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/mona.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/mona.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/pam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/pam.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/partition.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/plantTraits.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/plot.agnes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/plot.diana.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/plot.mona.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/plot.partition.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/pltree.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/pluton.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/predict.ellipsoid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/print.agnes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/print.clara.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/print.diana.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/print.dissimilarity.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/print.fanny.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/print.mona.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/print.pam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/ruspini.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/silhouette.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/sizeDiss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/summary.agnes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/summary.clara.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/summary.diana.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/summary.mona.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/summary.pam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/twins.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/volume.ellipsoid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/votes.repub.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/html/xclara.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/codetools/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/codetools/html/checkUsage.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/codetools/html/codetools.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/codetools/html/findGlobals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/codetools/html/showTree.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/compiler/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/compiler/html/compile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/AirPassengers.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/BJsales.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/BOD.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/ChickWeight.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/DNase.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/EuStockMarkets.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Formaldehyde.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/HairEyeColor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Harman23.cor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Harman74.cor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Indometh.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/InsectSprays.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/JohnsonJohnson.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/LakeHuron.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/LifeCycleSavings.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Loblolly.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Nile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Orange.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/OrchardSprays.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/PlantGrowth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Puromycin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Theoph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/Titanic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/ToothGrowth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/UCBAdmissions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/UKDriverDeaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/UKLungDeaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/UKgas.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/USAccDeaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/USArrests.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/USJudgeRatings.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/USPersonalExpenditure.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/VADeaths.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/WWWusage.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/WorldPhones.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/ability.cov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/airmiles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/airquality.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/anscombe.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/attenu.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/attitude.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/austres.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/beavers.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/cars.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/chickwts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/co2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/crimtab.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/datasets-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/discoveries.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/esoph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/euro.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/eurodist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/faithful.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/freeny.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/infert.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/iris.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/islands.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/lh.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/longley.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/lynx.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/morley.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/mtcars.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/nhtemp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/nottem.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/npk.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/occupationalStatus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/precip.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/presidents.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/pressure.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/quakes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/randu.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/rivers.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/rock.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/sleep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/stackloss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/state.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/sunspot.month.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/sunspot.year.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/sunspots.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/swiss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/treering.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/trees.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/uspop.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/volcano.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/warpbreaks.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/women.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/datasets/html/zCO2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/lookup.xport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.S.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.arff.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.dbf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.dta.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.epiinfo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.mtp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.octave.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.spss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.ssd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.systat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/read.xport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/write.arff.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/write.dbf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/write.dta.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/html/write.foreign.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/Devices.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/Hershey.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/Japanese.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/Type1Font.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/adjustcolor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/as.graphicsAnnot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/as.raster.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/axisTicks.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/boxplot.stats.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/bringToTop.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/cairo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/cairoSymbolFont.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/check.options.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/chull.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/cm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/col2rgb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/colorRamp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/colors.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/contourLines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/convertColor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/densCols.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev.capabilities.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev.capture.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev.flush.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev.interactive.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev.size.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/dev2bitmap.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/devAskNewPage.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/embedFonts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/extendrange.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/getGraphicsEvent.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/grDevices-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/grSoftVersion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/gray.colors.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/gray.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/hcl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/hsv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/make.rgb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/msgWindow.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/n2mfrow.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/nclass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/palette.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/palettes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/pdf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/pdf.options.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/pictex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/plotmath.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/png.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/postscript.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/postscriptFonts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/pretty.Date.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/ps.options.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/quartz.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/quartzFonts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/recordGraphics.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/recordplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/rgb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/rgb2hsv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/savePlot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/trans3d.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/windows.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/windows.options.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/windowsFonts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/x11.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/x11Fonts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/xfig.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/xy.coords.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/xyTable.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/html/xyz.coords.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/abline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/arrows.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/assocplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/axTicks.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/axis.POSIXct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/axis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/barplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/box.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/boxplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/boxplot.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/bxp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/cdplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/clip.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/contour.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/convertXY.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/coplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/curve.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/dotchart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/filled.contour.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/fourfoldplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/graphics-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/graphics-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/grid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/hist.POSIXt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/hist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/identify.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/image.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/layout.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/legend.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/lines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/locator.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/matplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/mosaicplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/mtext.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/pairs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/panel.smooth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/par.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/persp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/pie.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.dataframe.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.design.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.factor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.formula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.raster.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.table.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.window.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plot.xy.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/plothistogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/points.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/polygon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/polypath.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/rasterImage.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/rect.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/rug.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/screen.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/segments.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/smoothScatter.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/spineplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/stars.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/stem.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/stripchart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/strwidth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/sunflowerplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/symbols.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/text.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/title.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/units.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/xspline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/html/zAxis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/Grid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/absolute.size.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/arrow.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/calcStringMetric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/current.viewport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/dataViewport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/depth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/deviceLoc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/drawDetails.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/editDetails.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/editViewport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/explode.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/gEdit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/gPath.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/getNames.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/gpar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.DLapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.add.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.bezier.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.cap.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.circle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.clip.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.convert.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.copy.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.curve.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.delay.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.display.list.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.draw.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.edit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.force.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.function.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.get.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.grab.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.grep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.grill.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.grob.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.layout.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.lines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.locator.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.ls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.move.to.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.newpage.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.null.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.pack.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.path.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.place.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.plot.and.legend.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.points.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.polygon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.pretty.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.raster.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.record.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.rect.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.refresh.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.remove.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.reorder.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.roundrect.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.segments.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.set.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.show.layout.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.show.viewport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.text.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.xaxis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.xspline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grid.yaxis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grobCoords.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grobName.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grobWidth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/grobX.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/legendGrob.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/makeContent.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/patterns.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/plotViewport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/resolveRasterSize.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/showGrob.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/showViewport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/stringWidth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/unit.c.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/unit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/unit.length.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/unit.pmin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/unit.rep.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/unitType.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/valid.just.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/validDetails.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/viewport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/viewports.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/vpPath.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/widthDetails.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/xDetails.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/html/xsplinePoints.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/Lattice.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/Rows.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/USMortality.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/axis.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/banking.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/barchart.table.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/barley.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/cloud.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/draw.colorkey.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/draw.key.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/environmental.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/ethanol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/histogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/interaction.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/lattice.options.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/latticeParseFormula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/level.colors.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/levelplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/llines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/lset.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/make.groups.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/melanoma.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/oneway.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/packet.panel.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.axis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.barchart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.bwplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.cloud.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.densityplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.dotplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.functions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.histogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.levelplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.loess.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.number.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.pairs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.parallel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.qqmath.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.qqmathline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.smoothScatter.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.spline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.stripplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.superpose.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.violin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/panel.xyplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/prepanel.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/prepanel.functions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/print.trellis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/qq.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/qqmath.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/rfs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/shingles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/simpleKey.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/simpleTheme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/singer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/splom.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/strip.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/tmd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/trellis.device.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/trellis.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/trellis.par.get.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/update.trellis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/utilities.3d.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/xyplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/html/xyplot.ts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/BasicClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Classes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Classes_Details.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Documentation.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/EmptyMethodsList-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/EnvironmentClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/GenericFunctions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Introduction.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/LanguageClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/LinearMethodsList-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/MethodDefinition-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/MethodSupport.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/MethodWithNext-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/MethodsList-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/MethodsList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Methods_Details.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Methods_for_Nongenerics.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/Methods_for_S3.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/NextMethod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/ObjectsWithPackage-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/RClassUtils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/RMethodUtils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/S3Part.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/S4groupGeneric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/SClassExtension-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/StructureClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/TraceClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/as.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/callGeneric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/canCoerce.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/cbind2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/className.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/classRepresentation-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/classesToAM.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/dotsMethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/evalSource.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/findClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/findMethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/fixPrevious.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/genericFunction-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/getClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/getMethod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/getPackageName.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/hasArg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/implicitGeneric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/inheritedSlotNames.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/initialize-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/is.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/isSealedMethod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/languageEl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/localRefClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/method.skeleton.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/methodUtilities.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/methods-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/methods-deprecated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/methods-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/new.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/nonStructure-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/promptClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/promptMethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/refClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/removeMethod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/representation.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/selectSuperClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setAs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setClassUnion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setGeneric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setGroupGeneric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setIs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setLoadActions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setMethod.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setOldClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/setSClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/show.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/showMethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/signature-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/slot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/stdRefClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/substituteDirect.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/testInheritedMethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/validObject.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/html/zBasicFunsList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Beta.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/FFdes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Predict.matrix.cr.smooth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Predict.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Predict.matrix.soap.film.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Rrank.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Sl.initial.repara.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Sl.repara.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Sl.setup.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/Tweedie.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/XWXd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/anova.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/bam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/bam.update.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/bandchol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/blas.thread.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/bug.reports.mgcv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/cSplineDes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/chol.down.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/choose.k.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/columb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/concurvity.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/coxpht.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/dDeta.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/exclude.too.far.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/extract.lme.cov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/family.mgcv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/fix.family.link.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/fixDependence.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/formXtViX.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/formula.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/fs.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/full.score.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.check.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.convergence.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.fit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.fit3.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.fit5.post.proc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.mh.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.models.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.outer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.reparam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.scale.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.selection.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.side.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam.vcomp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gam2objective.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gamObject.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gamSim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gamlss.etamu.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gamlss.gH.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gamm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gammals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gaulss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/get.var.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gevlss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/ginla.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/gumbls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/identifiability.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/in.out.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/inSide.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/influence.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/initial.sp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/interpret.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/jagam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/k.check.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/ldTweedie.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/ldetS.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/linear.functional.terms.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/logLik.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/ls.size.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/magic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/magic.post.proc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/mgcv-FAQ.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/mgcv-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/mgcv-parallel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/mini.roots.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/missing.data.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/model.matrix.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/mono.con.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/mroot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/multinom.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/mvn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/negbin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/new.name.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/notExp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/notExp2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/null.space.dimension.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/ocat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/one.se.rule.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/pcls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/pdIdnot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/pdTens.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/pen.edf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/place.knots.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/plot.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/polys.plot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/predict.bam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/predict.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/print.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/psum.chisq.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/qq.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/rTweedie.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/random.effects.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/residuals.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/rig.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/rmvn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/s.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/scat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/sdiag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/shash.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/single.index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/slanczos.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.ad.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.bs.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.cr.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.ds.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.fs.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.gp.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.mrf.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.ps.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.re.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.so.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.sos.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.t2.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.tensor.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.construct.tp.smooth.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.info.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth.terms.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smooth2random.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/smoothCon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/sp.vcov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/spasm.construct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/step.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/summary.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/t2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/te.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/tensor.prod.model.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/totalPenaltySpace.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/trichol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/trind.generator.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/twlss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/uniquecombs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/vcov.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/vis.gam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/ziP.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/html/ziplss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/ACF.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/ACF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/ACF.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Alfalfa.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Assay.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/BodyWeight.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Cefamandole.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Coef.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Covariate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Covariate.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Dialyzer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Dim.corSpatial.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Dim.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Dim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Dim.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Earthquake.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Extract.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Fatigue.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Gasoline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Glucose.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Glucose2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Gun.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/IGF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Initialize.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Initialize.glsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Initialize.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Initialize.lmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Initialize.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Initialize.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/LDEsysMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Machines.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/MathAchSchool.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/MathAchieve.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Matrix.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Matrix.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Meat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Milk.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Muscle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Names.formula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Names.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Names.pdBlocked.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Names.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Names.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Nitrendipene.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Oats.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Orthodont.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Ovary.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Oxboys.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Oxide.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/PBG.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Phenobarb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Pixel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Quinidine.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Rail.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/RatPupWeight.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Relaxin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Remifentanil.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Soybean.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Spruce.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Tetracycline1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Tetracycline2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/VarCorr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.corExp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.corGaus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.corLin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.corRatio.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.corSpatial.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.corSpher.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.default.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Variogram.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Wafer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Wheat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/Wheat2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/allCoef.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/anova.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/anova.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/as.matrix.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/as.matrix.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/as.matrix.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/asOneFormula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/asTable.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/augPred.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/balancedGrouped.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/bdf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.gnls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.modelStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/coef.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/collapse.groupedData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/collapse.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/compareFits.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/comparePred.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corAR1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corARMA.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corCAR1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corCompSymm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corExp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corFactor.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corFactor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corGaus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corLin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corMatrix.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corMatrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corMatrix.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corMatrix.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corNatural.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corRatio.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corSpatial.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corSpher.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/corSymm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/ergoStool.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fdHess.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fitted.glsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fitted.gnlsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fitted.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fitted.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fitted.lmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fitted.nlmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fixed.effects.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/fixef.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/formula.pdBlocked.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/formula.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/formula.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getCovariate.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getCovariate.data.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getCovariate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getCovariate.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getCovariateFormula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getData.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getData.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getData.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroups.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroups.data.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroups.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroups.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroups.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroups.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroups.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getGroupsFormula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getResponse.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getResponseFormula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/getVarCov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gls-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/glsControl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/glsObject.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/glsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gnls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gnlsControl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gnlsObject.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gnlsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/groupedData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/gsummary.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/intervals.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/intervals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/intervals.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/intervals.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/isBalanced.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/isInitialized.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lmList.groupedData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lme.groupedData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lme.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lmeControl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lmeObject.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/lmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logDet.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logDet.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logDet.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logDet.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.glsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.gnls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.gnlsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.lmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/logLik.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/model.matrix.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/needUpdate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/needUpdate.modelStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/nlme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/nlme.nlsList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/nlmeControl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/nlmeObject.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/nlmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/nlsList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/nlsList.selfStart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pairs.compareFits.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pairs.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pairs.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdBlocked.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdCompSymm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdConstruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdConstruct.pdBlocked.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdDiag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdFactor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdFactor.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdIdent.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdLogChol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdMatrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdMatrix.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdNatural.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pdSymm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/phenoModel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.ACF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.Variogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.augPred.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.compareFits.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.intervals.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.nffGroupedData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.nfnGroupedData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.nmGroupedData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.ranef.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/plot.ranef.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/pooledSD.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/predict.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/predict.gnls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/predict.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/predict.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/predict.nlme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/print.summary.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/print.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/qqnorm.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/qqnorm.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/quinModel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/random.effects.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/ranef.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/ranef.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/recalc.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/recalc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/recalc.modelStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/recalc.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/recalc.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/residuals.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/residuals.glsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/residuals.gnlsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/residuals.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/residuals.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/residuals.lmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/residuals.nlmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/simulate.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/solve.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/solve.reStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/splitFormula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.corStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.lmList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.lme.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.modelStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.nlsList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.pdMat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/summary.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/update.modelStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/update.varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varComb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varConstPower.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varConstProp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varExp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varFixed.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varFunc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varIdent.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varPower.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varWeights.glsStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varWeights.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/html/varWeights.lmeStruct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/html/class.ind.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/html/multinom.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/html/nnet.Hess.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/html/nnet.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/html/predict.nnet.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/html/which.is.max.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/RngStream.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/children.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/clusterApply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/detectCores.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/makeCluster.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/mcaffinity.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/mcfork.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/mclapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/mcparallel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/parallel-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/pvec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/html/splitIndices.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/car.test.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/car90.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/cu.summary.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/kyphosis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/labels.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/meanvar.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/na.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/path.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/plot.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/plotcp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/post.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/predict.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/print.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/printcp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/prune.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/residuals.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/rpart-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/rpart.control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/rpart.exp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/rpart.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/rsq.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/snip.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/solder.balance.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/stagec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/summary.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/text.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/html/xpred.rpart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/Kaver.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/Kenvl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/Kfn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/Psim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/SSI.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/Strauss.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/anova.trls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/correlogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/expcov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/ppgetregion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/ppinit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/pplik.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/ppregion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/predict.trls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/prmat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/semat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/surf.gls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/surf.ls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/trls.influence.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/trmat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/html/variogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/asVector.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/backSpline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/bs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/interpSpline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/ns.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/periodicSpline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/polySpline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/predict.bSpline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/predict.bs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/splineDesign.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/splineKnots.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/splineOrder.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/splines-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/html/xyVector.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/AIC.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ARMAacf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ARMAtoMA.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Beta.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Binomial.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Cauchy.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Chisquare.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Distributions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Exponential.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Fdist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/GammaDist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Geometric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/HoltWinters.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Hypergeometric.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/IQR.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/KalmanLike.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Logistic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Lognormal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Multinom.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/NLSstAsymptotic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/NLSstClosestX.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/NLSstLfAsymptote.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/NLSstRtAsymptote.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/NegBinomial.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Normal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Pair.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Poisson.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSD.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSasymp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSasympOff.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSasympOrig.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSbiexp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSfol.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSfpl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSgompertz.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSlogis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSmicmen.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SSweibull.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/SignRank.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/StructTS.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/TDist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Tukey.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/TukeyHSD.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Uniform.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Weibull.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/Wilcoxon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/acf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/acf2AR.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/add1.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/addmargins.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/aggregate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/alias.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/anova.glm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/anova.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/anova.lm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/anova.mlm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ansari.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/aov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/approxfun.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ar.ols.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/arima.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/arima.sim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/arima0.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/as.hclust.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/asOneSidedFormula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ave.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/bandwidth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/bartlett.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/binom.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/biplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/biplot.princomp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/birthday.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/box.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cancor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/case.names.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/checkMFClasses.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/chisq.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cmdscale.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/coef.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/complete.cases.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/confint.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/constrOptim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/contrast.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/contrasts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/convolve.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cophenetic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cor.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cov.wt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cpgram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/cutree.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/decompose.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/delete.response.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/dendrapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/dendrogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/density.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/deriv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/deviance.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/df.residual.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/diffinv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/dist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/dummy.coef.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ecdf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/eff.aovlist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/effects.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/embed.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/expand.model.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/extractAIC.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/factanal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/factor.scope.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/family.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/fft.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/filter.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/fisher.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/fitted.values.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/fivenum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/fligner.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/formula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/formula.nls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/friedman.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ftable.formula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ftable.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/getInitial.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/glm.control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/glm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/glm.summaries.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/hclust.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/heatmap.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/identify.hclust.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/influence.measures.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/integrate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/interaction.plot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/is.empty.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/isoreg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/kernapply.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/kernel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/kmeans.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/kruskal.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ks.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ksmooth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lag.plot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/line.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/listof.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lm.influence.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lm.summaries.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lmfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/loadings.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/loess.control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/loess.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/logLik.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/loglin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lowess.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ls.diag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ls.print.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/lsfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/mad.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/mahalanobis.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/make.link.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/makepredictcall.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/manova.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/mantelhaen.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/mauchly.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/mcnemar.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/median.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/medpolish.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/model.extract.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/model.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/model.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/model.tables.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/monthplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/mood.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/na.action.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/na.contiguous.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/na.fail.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/nafns.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/naprint.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/nextn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/nlm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/nlminb.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/nls.control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/nls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/nobs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/numericDeriv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/offset.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/oneway.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/optim.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/optimize.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/order.dendrogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/p.adjust.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/pairwise.prop.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/pairwise.t.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/pairwise.table.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/pairwise.wilcox.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.HoltWinters.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.acf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.density.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.isoreg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.lm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.ppr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.profile.nls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.spec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.stepfun.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/plot.ts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/poisson.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/poly.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/power.anova.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/power.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/power.prop.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/power.t.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/pp.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ppoints.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ppr.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/prcomp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.HoltWinters.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.arima.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.glm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.lm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.loess.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.nls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/predict.smooth.spline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/preplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/princomp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/print.power.htest.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/print.ts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/printCoefmat.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/profile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/profile.nls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/proj.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/prop.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/prop.trend.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/qqnorm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/quade.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/quantile.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/r2dtable.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/rWishart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/read.ftable.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/rect.hclust.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/relevel.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/reorder.dendrogram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/reorder.factor.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/replications.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/reshape.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/residuals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/runmed.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/scatter.smooth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/screeplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/sd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/se.contrast.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/selfStart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/setNames.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/shapiro.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/sigma.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/simulate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/smooth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/smooth.spline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/smoothEnds.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/sortedXyData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/spec.ar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/spec.pgram.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/spec.taper.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/spectrum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/splinefun.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/start.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/stat.anova.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/stats-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/stats-deprecated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/stats-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/step.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/stepfun.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/stl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/stlmethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/summary.aov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/summary.glm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/summary.lm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/summary.manova.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/summary.nls.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/summary.princomp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/supsmu.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/symnum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/t.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/termplot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/terms.formula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/terms.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/terms.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/time.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/toeplitz.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ts-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ts.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ts.plot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/ts.union.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/tsSmooth.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/tsdiag.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/tsp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/uniroot.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/update.formula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/update.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/var.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/varimax.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/vcov.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/weighted.mean.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/weighted.residuals.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/weights.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/wilcox.test.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/window.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/xtabs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/html/zC.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/coef-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/confint-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/logLik-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/mle-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/mle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/plot-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/profile-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/profile.mle-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/show-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/stats4-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/summary-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/summary.mle-class.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/update-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats4/html/vcov-methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/Surv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/Surv2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/Surv2data.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/Survmethods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/aareg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/aeqSurv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/aggregate.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/agreg.fit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/aml.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/anova.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/attrassign.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/basehaz.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/bladder.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/blogit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/cch.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/cgd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/cgd0.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/cipoisson.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/clogit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/cluster.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/colon.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/concordance.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/concordancefit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/cox.zph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/coxph.control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/coxph.detail.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/coxph.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/coxph.wtest.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/coxsurv.fit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/diabetic.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/dsurvreg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/finegray.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/flchain.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/frailty.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/gbsg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/heart.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/is.ratetable.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/kidney.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/levels.Surv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/lines.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/logLik.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/logan.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/lung.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/mgus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/mgus2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/model.frame.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/model.matrix.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/myeloid.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/myeloma.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/nafld.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/neardate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/nsk.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/nwtco.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/ovarian.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/pbc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/pbcseq.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/plot.aareg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/plot.cox.zph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/plot.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/predict.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/predict.survreg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/print.aareg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/print.summary.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/print.summary.survexp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/print.summary.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/print.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/pseudo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/pspline.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/pyears.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/quantile.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/ratetable.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/ratetableDate.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/rats.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/rats2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/reliability.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/residuals.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/residuals.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/residuals.survreg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/retinopathy.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/rhDNase.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/ridge.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/rotterdam.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/royston.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/rttright.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/solder.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/stanford2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/statefig.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/strata.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/summary.aareg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/summary.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/summary.pyears.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/summary.survexp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/summary.survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survSplit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survcheck.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survdiff.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survexp.fit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survexp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survexp.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survexp.us.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survfit.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survfit.formula.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survfit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survfit.matrix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survfit.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survfit0.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survfitcoxph.fit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survival-deprecated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survival-internal.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survobrien.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survreg.control.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survreg.distributions.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survreg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survreg.object.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/survregDtest.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/tcut.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/tmerge.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/tobin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/transplant.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/udca.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/untangle.specials.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/uspop2.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/vcov.coxph.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/veteran.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/xtfrm.Surv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/yates.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/html/yates_setup.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/TclInterface.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/TkCommands.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/TkWidgetcmds.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/TkWidgets.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tclServiceMode.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tcltk-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tcltk-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tkProgressBar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tkStartGUI.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tk_choose.dir.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tk_choose.files.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tk_messageBox.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tk_select.list.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/html/tkpager.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/CRANtools.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/HTMLheader.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/HTMLlinks.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/QC.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/Rcmd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/Rd2HTML.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/Rd2txt_options.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/RdTextFilter.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/Rdiff.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/Rdindex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/Rdutils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/SweaveTeXFilter.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/add_datalist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/assertCondition.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/bibstyle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/buildVignette.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/buildVignettes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/charsets.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/checkFF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/checkMD5sums.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/checkPoFiles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/checkRd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/checkRdaFiles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/checkTnF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/checkVignettes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/check_packages_in_dir.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/codoc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/compactPDF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/delimMatch.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/dependsOnPkgs.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/encoded.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/fileutils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/find_gs_cmd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/getVignetteInfo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/loadRdMacros.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/makeLazyLoading.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/make_translations_pkg.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/makevars.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/md5sum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/package_dependencies.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/package_native_routine_registration_skeleton.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/parseLatex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/parse_Rd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/print.via.format.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/pskill.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/psnice.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/read.00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/showNonASCII.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/startDynamicHelp.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/testInstalledPackage.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/texi2dvi.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/toHTML.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/toRd.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/toTitleCase.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/tools-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/tools-deprecated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/tools-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/undoc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/updatePACKAGES.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/update_pkg_po.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/userdir.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/vignetteEngine.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/vignetteInfo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/writePACKAGES.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/html/xgettext.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/00Index.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/BATCH.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/COMPILE.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/DLL.version.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/INSTALL.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/LINK.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/PkgUtils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/Question.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/REMOVE.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/RHOME.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/RShowDoc.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/RSiteSearch.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/Rconsole.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/Rprof.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/Rprofmem.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/Rscript.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/Rtangle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/RweaveLatex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/SHLIB.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/Sweave.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/SweaveSyntConv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/SweaveUtils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/URLencode.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/View.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/adist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/alarm.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/apropos.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/aregexec.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/arrangeWindows.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/askYesNo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/aspell-utils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/aspell.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/available.packages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/bibentry.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/browseEnv.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/browseURL.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/browseVignettes.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/bug.report.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/capture.output.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/changedFiles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/charClass.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/choose.dir.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/choose.files.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/chooseBioCmirror.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/chooseCRANmirror.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/citEntry.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/citation.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/cite.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/clipboard.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/close.socket.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/combn.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/compareVersion.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/contrib.url.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/count.fields.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/create.post.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/data.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/dataentry.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/debugcall.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/debugger.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/demo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/download.file.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/download.packages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/edit.data.frame.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/edit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/example.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/file.edit.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/filetest.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/findLineNum.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/fix.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/flush.console.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/format.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/getAnywhere.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/getFromNamespace.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/getParseData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/getS3method.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/getWindowsHandle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/getWindowsHandles.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/glob2rx.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/globalVariables.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/hasName.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/head.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/help.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/help.request.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/help.search.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/help.start.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/hsearch-utils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/install.packages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/installed.packages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/isS3method.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/isS3stdGen.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/localeToCharset.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/ls_str.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/maintainer.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/make.packages.html.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/make.socket.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/memory.size.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/menu.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/methods.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/mirrorAdmin.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/modifyList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/news.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/nsl.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/object.size.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/package.skeleton.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/packageDescription.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/packageName.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/packageStatus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/page.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/person.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/process.events.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/prompt.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/promptData.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/promptPackage.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/rcompgen.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/read.DIF.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/read.fortran.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/read.fwf.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/read.socket.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/read.table.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/readRegistry.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/recover.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/relist.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/remove.packages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/removeSource.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/roman.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/rtags.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/savehistory.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/select.list.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/sessionInfo.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/setRepositories.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/setWindowTitle.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/shortPathName.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/sourceutils.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/stack.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/str.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/strcapture.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/summaryRprof.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/tar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/toLatex.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/txtProgressBar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/type.convert.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/untar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/unzip.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/update.packages.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/url.show.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/utils-defunct.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/utils-deprecated.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/utils-package.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/vignette.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/warnErrList.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/winDialog.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/winMenus.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/winProgressBar.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/winextras.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/write.table.html
+ for i in $RPM_BUILD_ROOT/usr/lib/R/library/*/html/*.html
+ sed -i 's|\..\/\..\/..\/doc|/usr/share/doc/R|g' /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/html/zip.html
+ chmod +x /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/R/sh/echo.sh
+ chmod +x /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/BATCH /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/COMPILE /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/INSTALL /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/LINK /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/R /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/REMOVE /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rcmd /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rd2pdf /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rdconv /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rdiff /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rprof /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rscript /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/SHLIB /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Stangle /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Sweave /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/build /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/check /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/config /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/exec /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/javareconf /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/libtool /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/mkinstalldirs /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/pager /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/rtags
+ chmod -x /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/CITATION /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/R/CAPABILITIES
~/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R ~/build/BUILD/R-4.1.2
+ '[' '!' -d /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/include ']'
+ pushd /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R
+ ln -s ../../include/R include
~/build/BUILD/R-4.1.2
+ popd
+ '[' '!' -d /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/texmf/tex/latex/R ']'
+ mkdir -p /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/texmf/tex/latex
~/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/texmf/tex/latex ~/build/BUILD/R-4.1.2
+ pushd /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/texmf/tex/latex
+ ln -s /usr/share/R/texmf/tex/latex R
~/build/BUILD/R-4.1.2
+ popd
+ /usr/bin/find-debuginfo -j6 --strict-build-id -m -i --build-id-seed 4.1.2-1.fc36 --unique-debug-suffix -4.1.2-1.fc36.i386 --unique-debug-src-base R-4.1.2-1.fc36.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/R-4.1.2
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/bin/Rscript
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/exec/R
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rscript
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/MASS/libs/MASS.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/lib/libR.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/KernSmooth/libs/KernSmooth.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/class/libs/class.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/Matrix/libs/Matrix.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/cluster/libs/cluster.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/foreign/libs/foreign.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/libs/cairo.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grDevices/libs/grDevices.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/graphics/libs/graphics.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/grid/libs/grid.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/lattice/libs/lattice.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/methods/libs/methods.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/mgcv/libs/mgcv.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nlme/libs/nlme.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/nnet/libs/nnet.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/parallel/libs/parallel.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/rpart/libs/rpart.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/spatial/libs/spatial.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/splines/libs/splines.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/stats/libs/stats.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/survival/libs/survival.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tcltk/libs/tcltk.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/tools/libs/tools.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/library/utils/libs/utils.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/modules/R_X11.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/modules/R_de.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/modules/internet.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/modules/lapack.so
extracting debug info from /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/libRmath.so
original debug info size: 18300kB, size after compression: 17028kB
/usr/bin/sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match.
19842 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/bin/true
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.VMwmV5
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-4.1.2
+ ulimit -s 16384
+ TZ=Europe/Paris
+ make check
make[1]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests/Examples'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running strict specific tests
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
running sloppy specific tests
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ... OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
running code in 'eval-etc-2.R' ... OK
  comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
checking Sys.timezone ...
make[4]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running code in 'timezone.R' ... OK
make[4]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running regression tests ...
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running code in 'array-subset.R' ... OK
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-1d.R' ... OK
running code in 'reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-examples1.R' ... OK
running code in 'reg-examples2.R' ... OK
running code in 'reg-packages.R' ... OK
running code in 'p-qbeta-strict-tst.R' ... OK
running code in 'd-p-q-r-tst-2.R' ... OK
running code in 'r-strict-tst.R' ... OK
running code in 'reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
running code in 'reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
running code in 'reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK
running code in 'reg-S4-examples.R' ... OK
running code in 'reg-BLAS.R' ... OK
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running code in 'reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ...882,885c882
< [1] FALSE
< Warning message:
< In Sys.setlocale("LC_CTYPE", mbyte.lc) :
<   OS reports request to set locale to "en_US.UTF-8" cannot be honored
---
> [1] TRUE
 OK
running code in 'reg-examples3.R' ... OK
  comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in 'reg-plot-latin1.R' ... FAILED
running code in 'reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[2]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running tests of Internet functions
make[3]: Entering directory '/builddir/build/BUILD/R-4.1.2/tests'
running code in 'internet.R' ... OK
  comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,247
< Warning message:
< In nsl("cran.r-project.org") :
<   nsl() was unable to resolve host 'cran.r-project.org'
---
> > 
> > # test do_download (and "record" #{packages}):
> > ap <- available.packages(contrib.url("http://cran.r-project.org"))
> > ## IGNORE_RDIFF_END
> > 
> > # test url connections on http
> > zz <- url("http://cran.r-project.org/")
> > readLines(zz)
>  [1] "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.01 Frameset//EN\" \"http://www.w3.org/TR/html4/frameset.dtd\">"
>  [2] "<html>"                                                                                                   
>  [3] "<head>"                                                                                                   
>  [4] "<title>The Comprehensive R Archive Network</title>"                                                       
>  [5] "<META HTTP-EQUIV=\"content-type\" CONTENT=\"text/html; charset=utf-8\">"                                  
>  [6] "<link rel=\"icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                           
>  [7] "<link rel=\"shortcut icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                  
>  [8] "<link rel=\"stylesheet\" type=\"text/css\" href=\"R.css\">"                                               
>  [9] "</head>"                                                                                                  
> [10] ""                                                                                                         
> [11] "<FRAMESET cols=\"1*, 4*\" style=\"border: none;\">"                                                       
> [12] "<FRAMESET rows=\"120, 1*\">"                                                                              
> [13] "<FRAME src=\"logo.html\" name=\"logo\" frameborder=0>"                                                    
> [14] "<FRAME src=\"navbar.html\" name=\"contents\" frameborder=0>"                                              
> [15] "</FRAMESET>"                                                                                              
> [16] "<FRAME src=\"banner.shtml\" name=\"banner\" frameborder=0>"                                               
> [17] "<noframes>"                                                                                               
> [18] "<h1>The Comprehensive R Archive Network</h1>"                                                             
> [19] ""                                                                                                         
> [20] "Your browser seems not to support frames,"                                                                
> [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN."                                           
> [22] "</noframes>"                                                                                              
> [23] "</FRAMESET>"                                                                                              
> > close(zz)
> > 
> > # and via read.table, test http and ftp.
> > 
> > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
>      V1  V2   V3    V4 V5
> 1     1 307  930 36.58  0
> 2     2 307  940 36.73  0
> 3     3 307  950 36.93  0
> 4     4 307 1000 37.15  0
> 5     5 307 1010 37.23  0
> 6     6 307 1020 37.24  0
> 7     7 307 1030 37.24  0
> 8     8 307 1040 36.90  0
> 9     9 307 1050 36.95  0
> 10   10 307 1100 36.89  0
> 11   11 307 1110 36.95  0
> 12   12 307 1120 37.00  0
> 13   13 307 1130 36.90  0
> 14   14 307 1140 36.99  0
> 15   15 307 1150 36.99  0
> 16   16 307 1200 37.01  0
> 17   17 307 1210 37.04  0
> 18   18 307 1220 37.04  0
> 19   19 307 1230 37.14  0
> 20   20 307 1240 37.07  0
> 21   21 307 1250 36.98  0
> 22   22 307 1300 37.01  0
> 23   23 307 1310 36.97  0
> 24   24 307 1320 36.97  0
> 25   25 307 1330 37.12  0
> 26   26 307 1340 37.13  0
> 27   27 307 1350 37.14  0
> 28   28 307 1400 37.15  0
> 29   29 307 1410 37.17  0
> 30   30 307 1420 37.12  0
> 31   31 307 1430 37.12  0
> 32   32 307 1440 37.17  0
> 33   33 307 1450 37.28  0
> 34   34 307 1500 37.28  0
> 35   35 307 1510 37.44  0
> 36   36 307 1520 37.51  0
> 37   37 307 1530 37.64  0
> 38   38 307 1540 37.51  0
> 39   39 307 1550 37.98  1
> 40   40 307 1600 38.02  1
> 41   41 307 1610 38.00  1
> 42   42 307 1620 38.24  1
> 43   43 307 1630 38.10  1
> 44   44 307 1640 38.24  1
> 45   45 307 1650 38.11  1
> 46   46 307 1700 38.02  1
> 47   47 307 1710 38.11  1
> 48   48 307 1720 38.01  1
> 49   49 307 1730 37.91  1
> 50   50 307 1740 37.96  1
> 51   51 307 1750 38.03  1
> 52   52 307 1800 38.17  1
> 53   53 307 1810 38.19  1
> 54   54 307 1820 38.18  1
> 55   55 307 1830 38.15  1
> 56   56 307 1840 38.04  1
> 57   57 307 1850 37.96  1
> 58   58 307 1900 37.84  1
> 59   59 307 1910 37.83  1
> 60   60 307 1920 37.84  1
> 61   61 307 1930 37.74  1
> 62   62 307 1940 37.76  1
> 63   63 307 1950 37.76  1
> 64   64 307 2000 37.64  1
> 65   65 307 2010 37.63  1
> 66   66 307 2020 38.06  1
> 67   67 307 2030 38.19  1
> 68   68 307 2040 38.35  1
> 69   69 307 2050 38.25  1
> 70   70 307 2100 37.86  1
> 71   71 307 2110 37.95  1
> 72   72 307 2120 37.95  1
> 73   73 307 2130 37.76  1
> 74   74 307 2140 37.60  1
> 75   75 307 2150 37.89  1
> 76   76 307 2200 37.86  1
> 77   77 307 2210 37.71  1
> 78   78 307 2220 37.78  1
> 79   79 307 2230 37.82  1
> 80   80 307 2240 37.76  1
> 81   81 307 2250 37.81  1
> 82   82 307 2300 37.84  1
> 83   83 307 2310 38.01  1
> 84   84 307 2320 38.10  1
> 85   85 307 2330 38.15  1
> 86   86 307 2340 37.92  1
> 87   87 307 2350 37.64  1
> 88   88 308    0 37.70  1
> 89   89 308   10 37.46  1
> 90   90 308   20 37.41  1
> 91   91 308   30 37.46  1
> 92   92 308   40 37.56  1
> 93   93 308   50 37.55  1
> 94   94 308  100 37.75  1
> 95   95 308  110 37.76  1
> 96   96 308  120 37.73  1
> 97   97 308  130 37.77  1
> 98   98 308  140 38.01  1
> 99   99 308  150 38.04  1
> 100 100 308  200 38.07  1
> > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
>      V1  V2   V3    V4 V5
> 1     1 307  930 36.58  0
> 2     2 307  940 36.73  0
> 3     3 307  950 36.93  0
> 4     4 307 1000 37.15  0
> 5     5 307 1010 37.23  0
> 6     6 307 1020 37.24  0
> 7     7 307 1030 37.24  0
> 8     8 307 1040 36.90  0
> 9     9 307 1050 36.95  0
> 10   10 307 1100 36.89  0
> 11   11 307 1110 36.95  0
> 12   12 307 1120 37.00  0
> 13   13 307 1130 36.90  0
> 14   14 307 1140 36.99  0
> 15   15 307 1150 36.99  0
> 16   16 307 1200 37.01  0
> 17   17 307 1210 37.04  0
> 18   18 307 1220 37.04  0
> 19   19 307 1230 37.14  0
> 20   20 307 1240 37.07  0
> 21   21 307 1250 36.98  0
> 22   22 307 1300 37.01  0
> 23   23 307 1310 36.97  0
> 24   24 307 1320 36.97  0
> 25   25 307 1330 37.12  0
> 26   26 307 1340 37.13  0
> 27   27 307 1350 37.14  0
> 28   28 307 1400 37.15  0
> 29   29 307 1410 37.17  0
> 30   30 307 1420 37.12  0
> 31   31 307 1430 37.12  0
> 32   32 307 1440 37.17  0
> 33   33 307 1450 37.28  0
> 34   34 307 1500 37.28  0
> 35   35 307 1510 37.44  0
> 36   36 307 1520 37.51  0
> 37   37 307 1530 37.64  0
> 38   38 307 1540 37.51  0
> 39   39 307 1550 37.98  1
> 40   40 307 1600 38.02  1
> 41   41 307 1610 38.00  1
> 42   42 307 1620 38.24  1
> 43   43 307 1630 38.10  1
> 44   44 307 1640 38.24  1
> 45   45 307 1650 38.11  1
> 46   46 307 1700 38.02  1
> 47   47 307 1710 38.11  1
> 48   48 307 1720 38.01  1
> 49   49 307 1730 37.91  1
> 50   50 307 1740 37.96  1
> 51   51 307 1750 38.03  1
> 52   52 307 1800 38.17  1
> 53   53 307 1810 38.19  1
> 54   54 307 1820 38.18  1
> 55   55 307 1830 38.15  1
> 56   56 307 1840 38.04  1
> 57   57 307 1850 37.96  1
> 58   58 307 1900 37.84  1
> 59   59 307 1910 37.83  1
> 60   60 307 1920 37.84  1
> 61   61 307 1930 37.74  1
> 62   62 307 1940 37.76  1
> 63   63 307 1950 37.76  1
> 64   64 307 2000 37.64  1
> 65   65 307 2010 37.63  1
> 66   66 307 2020 38.06  1
> 67   67 307 2030 38.19  1
> 68   68 307 2040 38.35  1
> 69   69 307 2050 38.25  1
> 70   70 307 2100 37.86  1
> 71   71 307 2110 37.95  1
> 72   72 307 2120 37.95  1
> 73   73 307 2130 37.76  1
> 74   74 307 2140 37.60  1
> 75   75 307 2150 37.89  1
> 76   76 307 2200 37.86  1
> 77   77 307 2210 37.71  1
> 78   78 307 2220 37.78  1
> 79   79 307 2230 37.82  1
> 80   80 307 2240 37.76  1
> 81   81 307 2250 37.81  1
> 82   82 307 2300 37.84  1
> 83   83 307 2310 38.01  1
> 84   84 307 2320 38.10  1
> 85   85 307 2330 38.15  1
> 86   86 307 2340 37.92  1
> 87   87 307 2350 37.64  1
> 88   88 308    0 37.70  1
> 89   89 308   10 37.46  1
> 90   90 308   20 37.41  1
> 91   91 308   30 37.46  1
> 92   92 308   40 37.56  1
> 93   93 308   50 37.55  1
> 94   94 308  100 37.75  1
> 95   95 308  110 37.76  1
> 96   96 308  120 37.73  1
> 97   97 308  130 37.77  1
> 98   98 308  140 38.01  1
> 99   99 308  150 38.04  1
> 100 100 308  200 38.07  1
> > 
 OK
make[3]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[2]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
make[1]: Leaving directory '/builddir/build/BUILD/R-4.1.2/tests'
Processing files: R-4.1.2-1.fc36.i686
Processing files: R-core-4.1.2-1.fc36.i686
+ RPM_EC=0
++ jobs -p
+ exit 0
warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/bin/Rscript and /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/R/bin/Rscript
warning: absolute symlink: /usr/share/texmf/tex/latex/R -> /usr/share/R/texmf/tex/latex
Provides: R(ABI) = 4.1 R(KernSmooth) = 2.23.20 R(MASS) = 7.3.54 R(Matrix) = 1.3.4 R(base) = 4.1.2 R(boot) = 1.3.28 R(class) = 7.3.19 R(cluster) = 2.1.2 R(codetools) = 0.2.18 R(compiler) = 4.1.2 R(datasets) = 4.1.2 R(foreign) = 0.8.81 R(grDevices) = 4.1.2 R(graphics) = 4.1.2 R(grid) = 4.1.2 R(lattice) = 0.20.45 R(methods) = 4.1.2 R(mgcv) = 1.8.38 R(nlme) = 3.1.153 R(nnet) = 7.3.16 R(parallel) = 4.1.2 R(rpart) = 4.1.15 R(spatial) = 7.3.14 R(splines) = 4.1.2 R(stats) = 4.1.2 R(stats4) = 4.1.2 R(survival) = 3.2.13 R(tcltk) = 4.1.2 R(tools) = 4.1.2 R(translations) = 4.1.2 R(utils) = 4.1.2 R-KernSmooth = 2.23.20 R-MASS = 7.3.54 R-Matrix = 1.3.4 R-base = 4.1.2 R-boot = 1.3.28 R-class = 7.3.19 R-cluster = 2.1.2 R-codetools = 0.2.18 R-compiler = 4.1.2 R-core = 4.1.2-1.fc36 R-core(x86-32) = 4.1.2-1.fc36 R-datasets = 4.1.2 R-foreign = 0.8.81 R-grDevices = 4.1.2 R-graphics = 4.1.2 R-grid = 4.1.2 R-lattice = 0.20.45 R-methods = 4.1.2 R-mgcv = 1.8.38 R-nlme = 3.1.153 R-nnet = 7.3.16 R-parallel = 4.1.2 R-rpart = 4.1.15 R-spatial = 7.3.14 R-splines = 4.1.2 R-stats = 4.1.2 R-stats4 = 4.1.2 R-survival = 3.2.13 R-tcltk = 4.1.2 R-tools = 4.1.2 R-translations = 4.1.2 R-utils = 4.1.2 config(R-core) = 4.1.2-1.fc36 libR.so
Requires(interp): /bin/sh /bin/sh /bin/sh
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /bin/sh
Requires(postun): /bin/sh
Requires(posttrans): /bin/sh
Requires: /bin/sh ld-linux.so.2 ld-linux.so.2(GLIBC_2.1) libR.so libX11.so.6 libXmu.so.6 libXt.so.6 libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.11) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.16) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.27) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_2.8) libcairo.so.2 libcurl.so.4 libflexiblas.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.3.1) libgobject-2.0.so.0 libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(GOMP_4.5) libgomp.so.1(OMP_1.0) libicui18n.so.69 libicuuc.so.69 libjpeg.so.62 libjpeg.so.62(LIBJPEG_6.2) liblzma.so.5 liblzma.so.5(XZ_5.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.23) libm.so.6(GLIBC_2.29) libpango-1.0.so.0 libpangocairo-1.0.so.0 libpcre2-8.so.0 libpng16.so.16 libpng16.so.16(PNG16_0) libreadline.so.8 libtcl8.6.so libtiff.so.5 libtiff.so.5(LIBTIFF_4.0) libtk8.6.so libtre.so.5 libz.so.1 rtld(GNU_HASH)
Obsoletes: R-Matrix < 0.999375-7
Recommends: cups
Processing files: R-core-devel-4.1.2-1.fc36.i686
Provides: R-Matrix-devel = 1.3.4 R-core-devel = 4.1.2-1.fc36 R-core-devel(x86-32) = 4.1.2-1.fc36 pkgconfig(libR) = 4.1.2
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Obsoletes: R-Matrix-devel < 0.999375-7
Processing files: R-devel-4.1.2-1.fc36.i686
Processing files: R-java-4.1.2-1.fc36.i686
Processing files: R-java-devel-4.1.2-1.fc36.i686
Processing files: libRmath-4.1.2-1.fc36.i686
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hYUZzq
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-4.1.2
+ DOCDIR=/builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/libRmath
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/libRmath
+ cp -pr doc/COPYING /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/share/doc/libRmath
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libRmath = 4.1.2-1.fc36 libRmath(x86-32) = 4.1.2-1.fc36 libRmath.so
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.23) libm.so.6(GLIBC_2.29) rtld(GNU_HASH)
Processing files: libRmath-devel-4.1.2-1.fc36.i686
Provides: libRmath-devel = 4.1.2-1.fc36 libRmath-devel(x86-32) = 4.1.2-1.fc36 pkgconfig(libRmath) = 4.1.2
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config
Processing files: libRmath-static-4.1.2-1.fc36.i686
Provides: libRmath-static = 4.1.2-1.fc36 libRmath-static(x86-32) = 4.1.2-1.fc36
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-debugsource-4.1.2-1.fc36.i686
Provides: R-debugsource = 4.1.2-1.fc36 R-debugsource(x86-32) = 4.1.2-1.fc36
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-debuginfo-4.1.2-1.fc36.i686
Provides: R-debuginfo = 4.1.2-1.fc36 R-debuginfo(x86-32) = 4.1.2-1.fc36
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(x86-32) = 4.1.2-1.fc36
Processing files: R-core-debuginfo-4.1.2-1.fc36.i686
warning: Duplicate build-ids /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/debug/usr/bin/Rscript-4.1.2-1.fc36.i386.debug and /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386/usr/lib/debug/usr/lib/R/bin/Rscript-4.1.2-1.fc36.i386.debug
Provides: R-core-debuginfo = 4.1.2-1.fc36 R-core-debuginfo(x86-32) = 4.1.2-1.fc36 debuginfo(build-id) = 190b7f4bca83ed72afa79c9418e73db665441fe5 debuginfo(build-id) = 222c7966e2146d5d12863cfefec90ae496458ee2 debuginfo(build-id) = 269ed534bc70b8f0c40cf7634ddefccd3f77318f debuginfo(build-id) = 3b090e4c4015dc52783a135751dfe5cb0a024ba3 debuginfo(build-id) = 405dd700c629794a9174311954bd03fda081f67d debuginfo(build-id) = 48cfd03d6f5254413dc4f2682927f0a37a25b000 debuginfo(build-id) = 49fae02f8e3b467b889e3e3afb9723ae6a08340c debuginfo(build-id) = 4a5cfe2685ad8fde78c95dac8b5c8d8f73c11a93 debuginfo(build-id) = 55b01c5418966074b566f20420343d40186a3bfa debuginfo(build-id) = 6ae7d39c912153157434c8051c4dbc18baf95481 debuginfo(build-id) = 71a5be64f04fde21ab57575e600e39a6c0ff56d3 debuginfo(build-id) = 73f5fc82281ca619f758c23a0d62290cb142da16 debuginfo(build-id) = 7991c1d92b9c9373851d818a319ed3ee030ad087 debuginfo(build-id) = 7b41e28e3b6cd7b9ca071d17fabbb2e4a356854c debuginfo(build-id) = 7b5a31ca0f344cd2355f723215b3095b78e39fb2 debuginfo(build-id) = 7dac6c38fec031b146ae2d47918fbd8d1a45617a debuginfo(build-id) = 895d54b22327c2ea2f8ce7c94814983f8e1113c8 debuginfo(build-id) = 9304312bcc849716d57a87799a4610589494bd32 debuginfo(build-id) = 932fea470d675076988184ff546357b17c092a82 debuginfo(build-id) = 9670d2f9e1db9457972c7a84033c2380ae31bed2 debuginfo(build-id) = 98df8aa5fe1dd35ce32c1c669edc032414f72b0e debuginfo(build-id) = a133c339df9804ad39001f4732f7ce10e138e52b debuginfo(build-id) = b6291e990e35fa5531c3065d5b4fd295c6ba264e debuginfo(build-id) = b79a210b403124b5cfd04599ef449dcbd323a090 debuginfo(build-id) = bf9dfc84cd7372a6198cca471a70e20ab162a5c9 debuginfo(build-id) = d50479bec4a70e0a9158f7b935512bfdc379fff5 debuginfo(build-id) = d7ba611390367c4a2bae0237b3ab902dd50fc252 debuginfo(build-id) = da61a4d7bab893af2cef00c1fe7c39a1e9791d5c debuginfo(build-id) = dfd28b35d88383e3b44bef13d3bf9786790cbdb1 debuginfo(build-id) = e9b797dc6cb97afd91a098c2af797fdc78729cbc debuginfo(build-id) = ecb3dc7c47b779f8bb1eec96022dc4f361ae961b debuginfo(build-id) = nilnil libR.so-4.1.2-1.fc36.i386.debug
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(x86-32) = 4.1.2-1.fc36
Processing files: libRmath-debuginfo-4.1.2-1.fc36.i686
Provides: debuginfo(build-id) = 58d5e8db5d300c64b60a0afb268a725ff326483a libRmath-debuginfo = 4.1.2-1.fc36 libRmath-debuginfo(x86-32) = 4.1.2-1.fc36 libRmath.so-4.1.2-1.fc36.i386.debug
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-debugsource(x86-32) = 4.1.2-1.fc36
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386
Wrote: /builddir/build/RPMS/libRmath-static-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/libRmath-debuginfo-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-core-devel-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/libRmath-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-debuginfo-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/libRmath-devel-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-devel-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-java-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-java-devel-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-debugsource-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-core-debuginfo-4.1.2-1.fc36.i686.rpm
Wrote: /builddir/build/RPMS/R-core-4.1.2-1.fc36.i686.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.CCevZc
+ umask 022
+ cd /builddir/build/BUILD
+ cd R-4.1.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-4.1.2-1.fc36.i386
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0